Array 1 22844-21840 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGNT01000049.1 Micromonospora echinospora strain ATCC 15837 contig49, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 22843 37 100.0 37 ..................................... ACGTCGACGCCCCCATCGTCGCGGTGACCGTCTACGC 22769 37 100.0 36 ..................................... TACATGGCGGTGCCGTGGCTGCTCGACTCCTTCAAC 22696 37 100.0 35 ..................................... GCCGCCGTGGCGACCAGGTCGGCGGCGAAGTCCGG 22624 37 100.0 38 ..................................... CTCGGGCGTCGGGCCGGGCGGGGGGCCGTCGACGAGCA 22549 37 100.0 36 ..................................... TCCAGCCCGAACGTGAGTCCGCCGGCGAAGTTGGAC 22476 37 100.0 36 ..................................... CCCCTGGAGCTGGGGCCGTTCAGGTGGACGATGAAG 22403 37 100.0 38 ..................................... CACAGGCGGGCAATGGCGTTGAAGCCGGACCGGAACGG 22328 37 100.0 38 ..................................... ACGCCCATGCAGACCACGCCGCCGATCGTGGAGCGCAC 22253 37 100.0 38 ..................................... GCTGTCATTCGCTACCGGCCCGGCGATGACCCGACCGT 22178 37 100.0 40 ..................................... GGCGAGCAGTCGTACGGCGAGGGCGACGACCCAATCGCGT 22101 37 100.0 38 ..................................... AGTGCGGTGACGGTGGACCTGGTCGCGTCGCCGGAGCT 22026 37 100.0 38 ..................................... GGCTACATCACCTGACCGGGCGCGATGCCCGGCCCGAT 21951 37 100.0 38 ..................................... GTCGTACCTGGAGGTACCCATGGAGTACGGACCCACCC 21876 37 83.8 0 ......T.......................A..TGTA | ========== ====== ====== ====== ===================================== ======================================== ================== 14 37 98.8 37 GCTGCGCCCGGCCACCGCGCCGGGCGAGGATCGCAAC # Left flank : GCCGCAGGATCCGATACACCGTCGCCCGAGCCGGTGGTGGAGTCACCCCGCGACGACCCGCCTCGAACCGCAACCGCCGCGGACCCCACCGCGGATGATCCCGCCGCAGCTCACACACCAACGCCTCCGTCGCGGCGTCAACCCGGTGCGGGCAGACATGCGGACGATGCGACCGGTCCTCCAAGCCCTTGACGCCCTCGGCGGCATACCGGGCCAGCCAGTTGTGAATCGTCTGCCGCGACACCCCATACCGGGCGGCGACCTCCGTCTTCGGCGTCCCACCCAAGCACTCCATCACGGCGTGAAACCGCTGCTCCATAACGCTTAACTCCGCAAGCCTCACCCGGTGCTCCTCCCGCCTGAGTTACAGACGCAACGAGCACCAGGCCGACCAGGTGTCAAACGTCAACCGAGGCCGCCGTGTCAAGCATCAACCGGCGTAGGACACCGGGCGAGGATCGCAACTCGGTTGCCGCCGGCGTGGCGCGACACATCCACAC # Right flank : GTGCATCTTCGTCGTCGGTCGGATCCGGGTCCTGGTCGACAGCCAGTACCGCAACCACCGGGCGGTCGTCCACGACCGGCCGGCCTGCTGCTCGCGTGAAAGGAGCAGGAGTTCGTCCCGAGCCTCCCGCGCCGCCGCTTCCGACGCGTAGCCACCTCGGCGTACCCGTTCCGCCTGTCCGAGCAGATTCCGCGTGGAGCAGTGAAAGTACCAACTTCCATGGTCACGCTCCGGCAACTTCGCACAGGTCTTGCCCAGCGTTCGGCGGGTTACCGGGTCCAGGCAGCCGCACCGCTTCACGATCGCGCCGTAGCTTCTCATCGCTTTTCTCCCTTTGTCGATGGTGGTCACACCCTGACGCAGGGAGTCTGGGTAAAAATCGTTTTCCGCGCCGGTTCACGTATTCGGCCGACTACGAGTCATTCGGTGCGAATAAAAGGCTTCGGTCCGGCCCCGTGGTCCGGGATTGGACCTTGGTCCGGGACCGGGTCGGAAGGGAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCGCCCGGCCACCGCGCCGGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCTGCGCCCGGCCACCGCGCCGGGCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-17.20,-16.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 175937-174808 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGNT01000006.1 Micromonospora echinospora strain ATCC 15837 contig06, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 175936 28 100.0 33 ............................ GTAGGCGGCGGGGCCGACGTGACATATGACGAT 175875 28 100.0 33 ............................ CAGCCCCCGCGCTACGCGCACCGACGCGAGCAC 175814 28 100.0 33 ............................ CTGGTCCGGGGAGAGGATGCCCACCGATGCGTT 175753 28 100.0 34 ............................ CTACAGACCACGTTGAAGGGTTGGAGCCACGAGC 175691 28 100.0 34 ............................ GGCCGCTCACTCGCTGCTGCCGGTGATCCGTGCC 175629 28 100.0 33 ............................ GTCACCGGTCGGGCCCGCCGCCGTGTGCGGCCA 175568 28 100.0 33 ............................ CGGCCACGGCGGCATCGTCGCCGACCACCACCA 175507 28 100.0 33 ............................ CACGTCGTCATCGACCGCAACGGCGACCAGGTG 175446 28 100.0 33 ............................ CAGGCCGTGGTCGTGGCCCAGGTCGAACGCACC 175385 28 100.0 33 ............................ CCACTCCTTTTGGATCTCCTCCACGGAGGTGGT 175324 28 100.0 33 ............................ CTGGTCGGCGTACTTGGAGGCGCTGCCGCGTTC 175263 28 100.0 34 ............................ GTACTGCCGCGCCGTCAGCCGCATCATGTCGGCC 175201 28 100.0 33 ............................ CTCGTGGGTGAACGTCCAGCGGGCATGACCGCT 175140 27 96.4 33 ...........-................ CACCAGCCAGCAGCACTGCCTGCACTGCGGCTA C [175126] 175079 28 96.4 33 ................T........... GGTCACGCCCGGCAGCCTCGGGCCGTACGACCC 175018 28 100.0 33 ............................ CGTCTCGCACCCGGTCGCGCCCGGCGAGCGTCG 174957 28 100.0 33 ............................ GGACTCCGGCGCGCGCTACTCGGAGCTGACGCC 174896 28 100.0 33 ............................ GGTGTCGGCGCAGAGTCCGGAGGAAACGCCGGA 174835 28 96.4 0 ...........................A | ========== ====== ====== ====== ============================ ================================== ================== 19 28 99.4 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : AGGGAGGCACTCCCCTGCTGACGAGAGGACCTCACAGGGAGGAACTTAGAAGGCAGTGCCTGCACAGTCAACAGAGCATGCACGGTGTGTCACTCCTGGTGCGAAAATCGGGCCGCTGACGAGAGGTGGCACGACCATGCCGCAGGCACCGCTATACGAGCAGCTCATCGCCGACGTGACAGCGTCGATTCGCGAAGGCACGCTGCAACCGGGTGACAAACTGCCGTCTATCGCCGAACTGCGCGAGCAGTACCAGTCGAGCGCGTGGCCAGTCCGGTACGCCCTCCGGATCCTGGAGGAGCGCGGCTGGATCATCACCCGGCAGGGCAAGGGGTCCTACGTGGCACCAAGCCCGCCCGCCTAGATCAGGCAAGCCCTCAGACGTACGACCGATAGCCTAAAGGCTGAACAACCACCCACTACCACTCGGGAAATTGATCTTGAGAGTCAAAGTGAACGAAAACGCAGTAGTTGATCTTTAGAGCCTCAGGTCAAGAAGT # Right flank : AATGACCTGCCGCGCGAGCAGCTTGAGGGCGCGTCGCCGGACAGGTGTAGACCGACGCCCTGACCTTGAAGACCGCGTGCCTCTCGGTGCCGCGACCGATGTCGACGATGCCCGCCAGGCCGGAGTCCTGACCCGCGCCGCAGCCGGTGACCCCGCCCTCGGCCACGCTGCCCACGCCACCCTCACCCACCAGGCACAACCTGACAGATGTCGATCTCAAGACCGTCGATGCCGCACAATGACCCTGCACTTGGCGATCTCTGAGGCACCCGGCCTCAGGTCGTCGGGAGTCCGGGGAGGACGACATGCGGTTCGCTAGACGACTGACGCTTTCGGTCGCGATGGTTCTCAGCCTTCTGGTCCTGTCTGGGCAGCCGGCCCAGGCCGCCTACTACAACACGTACAGCGACATTGCCAGCACACCCGACACAGGATGCTGCACCGGGGTACAGGGCTTCGCCGCCGGAGCCACCTACCTCTACTCGGTCAAGACGCGCACC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], //