Array 1 1049888-1051319 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP076704.1 Escherichia coli O8:H28 strain BMH-17-0027 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1049888 29 100.0 32 ............................. TAATACGCATCTCATTCATTGTGCCTTGTCGA 1049949 29 100.0 32 ............................. TCCACGTAGACCCTAAAACAGGTAAACGATTA 1050010 29 100.0 32 ............................. TCGACAGTGAATTGCTTGCGCAGACGCGTGAA 1050071 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 1050132 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 1050193 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 1050254 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 1050315 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 1050376 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 1050437 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 1050498 29 93.1 32 ..A.........................T AGATCGCGCCACGAGGAAACGAATATGAACGG 1050559 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 1050620 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 1050681 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 1050742 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 1050803 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 1050864 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 1050925 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 1050986 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 1051047 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 1051108 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 1051169 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 1051230 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 1051291 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1077019-1077717 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP076704.1 Escherichia coli O8:H28 strain BMH-17-0027 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1077019 29 100.0 32 ............................. ATTTTGGGGGGCAACCAGGCAGATGAAGTAAA 1077080 29 100.0 32 ............................. GCCTGTTTCCTGACGCTGGCCGACAGTCGGCC 1077141 29 100.0 32 ............................. CCGGCGCGCTGGCGTCAGGCGTTCCAGTGGTG 1077202 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 1077263 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 1077324 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 1077385 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 1077446 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 1077507 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 1077568 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 1077628 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 1077689 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //