Array 1 237121-238978 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYNH01000003.1 Salmonella enterica strain BCW_4939 NODE_3_length_365370_cov_2.74625, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 237121 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 237182 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 237243 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 237304 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 237365 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 237426 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 237487 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 237548 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 237609 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 237670 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 237731 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 237792 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 237853 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 237914 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 237975 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 238036 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 238097 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 238158 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 238219 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 238280 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 238341 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 238402 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 238463 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 238524 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 238585 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 238646 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 238707 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 238768 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 238829 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 238890 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 238951 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 255660-257399 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYNH01000003.1 Salmonella enterica strain BCW_4939 NODE_3_length_365370_cov_2.74625, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 255660 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 255721 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 255782 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 255843 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 255904 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 255965 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 256026 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 256087 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 256148 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 256209 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 256270 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 256331 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 256392 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 256453 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 256514 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 256575 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 256636 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 256697 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 256759 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 256821 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 256882 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 256943 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 257004 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 257065 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 257126 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 257187 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 257248 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 257309 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 257370 29 100.0 0 ............................. | A [257397] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //