Array 1 2118192-2110971 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007174.1 Candidatus Nitrososphaera evergladensis SR1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================================== ================== 2118191 37 100.0 36 ..................................... CAAGAAAAAATACAAGGATATGAAGCTAGATAGCAT 2118118 37 100.0 36 ..................................... TCTGTAGACAACATCGTAGACCTTAAACCTAAAACT 2118045 37 100.0 37 ..................................... CGGTCCATTCCAAAAGTTGTGTCTTGCCCCTTGCTGG 2117971 37 100.0 34 ..................................... CGCATTATAACAAAGAAGAGCTACGACAAAAGAT 2117900 37 100.0 35 ..................................... TTAGAGCCTACGCTGTCGTTTCCGTTGCCTGCAAA 2117828 37 100.0 35 ..................................... TGAAGCCAAACATAAAGGACCTTTGTTCTATGGCC 2117756 37 100.0 36 ..................................... TAGGACGTTCTTATCGTCTTGTTGTTTGCACCATCC 2117683 37 100.0 35 ..................................... AGGACCCGATAGCTGCATTCGTAGACGAATGCCTG 2117611 37 100.0 36 ..................................... CCCTGCGCTCAAGTCTAGGGTCCTTGCTCATAAGCT 2117538 37 100.0 37 ..................................... TATTTTTCAACTCGTTGGCCATGTCTACCGCTTGCTT 2117464 37 100.0 34 ..................................... TCTCTTACGAACTCCTCAGGATTGAAATCCTCGT 2117393 37 100.0 36 ..................................... CCTTCGTCCTCCACTCGTTGTTTTTCTCCACCGGCT 2117320 37 100.0 35 ..................................... TAAAGATAACAAAGACGATTTTTCAGCTTGTTACA 2117248 37 100.0 36 ..................................... GAATCTATTTTTCCACTAAGATTCGTCCCTGCTGTA 2117175 37 100.0 35 ..................................... TTTTATGACTAGAAAGTAGCGTTATAACAGATAGC 2117103 37 100.0 35 ..................................... CCACCAAATACGGCGCAAGCAAAAAGGTTCCCGAA 2117031 37 100.0 34 ..................................... CAACAAATCGCATCGGTACAGATTGATTTGCTGC 2116960 37 100.0 38 ..................................... TTTGTTACCCAGCCCTGTTCGTTGGTGACTTGGAACTT 2116885 37 100.0 36 ..................................... CAACTTCCGGAAGCGCAAGCGCAAAGTGAATGTGCT 2116812 37 100.0 37 ..................................... CCAAAACTAGTGGTTGAAGACCCGCCACAAAAGGACG 2116738 37 100.0 35 ..................................... ATCAAGGCCCGAACACCCCGCACGGACTGGGACTC 2116666 37 100.0 35 ..................................... TAGATAGAAGGTGACTTCTCTGTGTCGCTTTTAAC 2116594 37 100.0 52 ..................................... ATTATCTTAAGAATCCATACGCGACTGGAAGCAACACAAAAGACACTGTAGA 2116505 37 100.0 35 ..................................... CACGCGCTGCAGGGGTGATGTCGACTTGCTCACCC 2116433 37 100.0 35 ..................................... ACTACAAGTAGTTAGGCATGGCAACATCGAAAAAG 2116361 37 100.0 36 ..................................... CAACTGCGCAGGCAAGCGCCAGCTCGTCCTCATTCT 2116288 37 100.0 36 ..................................... TAAAGGTAAATAGTCAGATTTCCGCCACGAGCAATA 2116215 37 100.0 35 ..................................... TCATCAGCGGCATTGGCGGTATTGCTGTTCCCTGA 2116143 37 100.0 35 ..................................... TCTCCACGTACTTTGTCATCCATTCCTGGAAGAGC 2116071 37 100.0 36 ..................................... GCCCCGGCTCGGCTGGCCTCTTCAGGTAGAAGAATT 2115998 37 100.0 34 ..................................... CTCATTTTTCCACCATTTCCTCCTCTTTTTTATG 2115927 37 100.0 34 ..................................... CACTCACCACAGGCACATCAAGCACAGACAAACA 2115856 37 100.0 34 ..................................... TTTCCAGTACGGCAAGCAGCCCAACTACACTACG 2115785 37 100.0 34 ..................................... TCGTGCCTGCGTCCAAATCTGACTGCGTAACATA 2115714 37 100.0 38 ..................................... GGGCTGCAGGGCATGATAAAGGAACGCTGGCTTGACAT 2115639 37 100.0 36 ..................................... GATATTCACCGACTGCGCCATGAGTGCCATCTGTGT 2115566 37 100.0 36 ..................................... ATAACCTCGTCGTCAAAGTATTCCCTGTCGTTGGTC 2115493 37 100.0 35 ..................................... ATGCCAACATGGACAAGCAGGGCGACGACACCATC 2115421 37 100.0 36 ..................................... TTGTCGACAGCATCATCTCGCTTCACAGGGCAGAGT 2115348 37 100.0 34 ..................................... CTTTAACAAAGAAGTGATACGAGAGGCGCTAAAG 2115277 37 100.0 38 ..................................... TGTATTGTAGTGCACGCCAATCGTAAGATCAACTGCCT 2115202 37 100.0 34 ..................................... TTTTCTCGATGGTCCTTATACCGCGGATTTTAGA 2115131 37 100.0 36 ..................................... TCTGGACGTCCACTGCAGCAGAAAGGCCAAAATCGA 2115058 37 100.0 34 ..................................... TTTGCGGCATACCTGTACCAGTAGTGGATATCCT 2114987 37 100.0 38 ..................................... TATACTCACGAACAAGAGAACGCCCTCGAACTGCAACT 2114912 37 100.0 38 ..................................... CCAAACTCCTCTCCGTAATTGGTAGCAAGACCCGTTAC 2114837 37 100.0 35 ..................................... ACCTAAAGCCCGAGCCCGAGCAAAAGGCGTCAATT 2114765 37 100.0 37 ..................................... TATTTTTCAACTCGTTGGCCATGTCTACCGCTTGCTT 2114691 37 100.0 34 ..................................... TCTCTTACGAACTCCTCAGGATTGAAATCCTCGT 2114620 37 100.0 36 ..................................... CCTTCGTCCTCCACTCGTTGTTTTTCTCCACCGGCT 2114547 37 100.0 35 ..................................... TCATGGCATGTCCGCAATGTGGAACTATCCTGTAT 2114475 37 100.0 35 ..................................... TCAGTGCCCGAAACCGAATAGTACAATGATATACG 2114403 37 100.0 36 ..................................... GTTGAACGTCGGCGCCTTCGGAAGCGAAGCATTCAA 2114330 37 100.0 35 ..................................... AATGTCATAGAAGAAGATTCGTGCCTTCAATAGAT 2114258 37 100.0 38 ..................................... CATTGCAGAAGGAGATGAATATCCTGAGGGAGCAGATT 2114183 37 100.0 35 ..................................... CACATACGGTTGCGGGCAAATTGAGCGCAAAAATA 2114111 37 100.0 35 ..................................... TGAATCAGTGAGGCGCAAGGCAGCAGCCGTCCTTT 2114039 37 100.0 34 ..................................... ACAGTCTCACGCAACCCCGACTATATCATATCGA 2113968 37 100.0 34 ..................................... AAACCGCCTACGGTAAAACAATGGAGGTTTACAA 2113897 37 100.0 35 ..................................... CTCTCCTGCAGGAGCTATCACATTGGTAAATGAAG 2113825 37 100.0 34 ..................................... TTATTACAGCTACCGGAAGCGACGGAAATAGTGC 2113754 37 100.0 36 ..................................... TGTCATCATCGGGCGCGACTTGACCCGTTCCGAAAA 2113681 37 100.0 36 ..................................... CGTTGCCAGCGGAGCAGGAAACCCGCCAACCGAGAA 2113608 37 100.0 35 ..................................... CATAGCCTTGGAGCCTTTGGTAGTTTGTGCGGGTC 2113536 37 100.0 37 ..................................... TCAGCCTGATAAATGACTTGCGGCGGGCAAACATTGT 2113462 37 100.0 35 ..................................... TCAAGACGTTTATCGACTCGGACACCTCCTTTACG 2113390 37 100.0 34 ..................................... TGTTTTCTATTGTAATATCTGCCTCCGCCTTTGG 2113319 37 100.0 34 ..................................... TCTCCGCCTCTACCTCCATACCCGCAATTTCGGA 2113248 37 100.0 36 ..................................... TGCTTTTCCCGTCGTTGTTCTTGTCTCTCGTGGTGT 2113175 37 100.0 35 ..................................... TGCTCAACGGCGATGTCGTGAGCCTCTTCTGAATC 2113103 37 100.0 35 ..................................... CTATAACAAGGGATACCTCATTCTCGATTGGTGGT 2113031 37 100.0 36 ..................................... TCTATGCCATTATTGACGGCGCGCCGACGCAACGAA 2112958 37 100.0 36 ..................................... GATCCCAAGCTTTTCCGATAGGTCCGTCTTTGTGCC 2112885 37 100.0 35 ..................................... TCGTCTACGGTGTTGTCCGTGTTGATAGTGATAAT 2112813 37 100.0 34 ..................................... CTTTACTCCTTTCTATTTCCCTCCTTTTCCTGCC 2112742 37 100.0 31 ..................................... TCGGTTTTAGGGGGGGGAGGTTCTTTAACCA 2112674 37 100.0 37 ..................................... TGTAATCGACCGGCTTTTCTTCGCGCTCAAACTTGCC 2112600 37 100.0 36 ..................................... CAAGGATCGCAATGGCCAGTATAGCAACACCGACAC 2112527 37 100.0 35 ..................................... ATCCCCATGGACGAATGGGAAACTCCTGACTTTGT 2112455 37 100.0 35 ..................................... TTGTCGCACTCTATCAGAGCGCCGCAAGAGCCGCA 2112383 37 100.0 34 ..................................... TACAAACTTGCTCGTGAGAAGGGAATAGGGGCAA 2112312 37 100.0 36 ..................................... GTCTTGGCCTCGTCAGAATTTCCCCTGATTCTCGCG 2112239 37 100.0 36 ..................................... TGCTTGACTTCGACCAGCTCTAGCGGGATTCTGGCC 2112166 37 100.0 34 ..................................... TCTACACGGTTGCTTTGAACTTTGACGATAGCAG 2112095 37 100.0 35 ..................................... TCCTGGAGCTGAGCTATTGAGATGGCAGAAGATAG 2112023 37 100.0 35 ..................................... CGAATGCCTCAACGTTCTGGCAGAACTGGCCCCAA 2111951 37 100.0 37 ..................................... CCGCGTTCTATGGCGACTTTCCGGTCAACAAGGAGAT 2111877 37 100.0 35 ..................................... TCAGCACTCTCTTTCACCGAAGTCAACAAGAAAGA 2111805 37 100.0 36 ..................................... ACAAGGGGCAGATAGGCGCCATGACGGGGTACGCGT 2111732 37 100.0 34 ..................................... CAAGATGAACGGCTCTGTCAAGGGAGAGACGCTT 2111661 37 100.0 35 ..................................... TCTGGTCTACCTGTTGATGCAGTGTAGTCGTTGAA 2111589 37 100.0 37 ..................................... TCTAGTTCGGGTGTCGGAGGCATCTTGATCTCTTTGT 2111515 37 100.0 35 ..................................... TTGTTTGAGCTACAGGCTTGCCGACATTGATTCCT 2111443 37 100.0 34 ..................................... TTCTAGGCGCTCCCGCACTAGAATGTTGACAGCA 2111372 37 100.0 36 ..................................... TGAGTTGCGGAAATATGGAAATTGAATCTGCCAAGC 2111299 37 100.0 36 ..................................... GCGTCTTCGATGGCGACCCTGATCCTTGCCGCTTCC 2111226 37 100.0 36 ..................................... CTGAACCATGACGAGCTTTTTGGGAGATTCTTGTCT 2111153 37 100.0 38 ..................................... CCAAGTGTCTTTGGCTCTCACAGTATGTTGCAAAGAAT 2111078 37 100.0 34 ..................................... CTGGCGTTTGTGCTGTTACCGTTGCGTTCCATGT 2111007 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================================== ================== 100 37 100.0 36 GTCTGAAAGACGAATCCACCACAACAAGGATTGAAAC # Left flank : TGGCACGAGGAAAGAAGCTGGTTGCAATGCAGCTTTACTCGACGCGGTTAGGTCTGTCGGGAAAAATTGATGAAGCCTACGAGAGTAGTAGAGAAATCATTCTGGTTGAAAGAAAATACACTGATTTCACTGTGATAACCGACAGCTTGAAGGCTCAGATCGGCTTGCTCTCCATTTTGCTTGAGGAGAATCGCAATAAGCCTGTTACTCGTGTTTTTGTGATCTTTCAAAAATCAAAGCGAGTAGTAAGAGAAATTAGATTAACATCAGAATTGAAAAACTTTGCTTTGCAAAAGTTAGAATCTGTTAAGCAGATAATAACAAGTGGAATCAGCCCAAATGCACAGTACGGCAGTAAATGTCTCGACTGCACATACAGAAAGGTATGTCCTACCGGATCTTTATATATGAATCAATAAAAATGAAGAACGGTGATGAAAACAGATTTTCCATATCCAAGAATTGCGGTTTTGAGCACAAAACTGGGCATTTATGGCGCT # Right flank : GAACTGGATTCAATTGTGGCTCTCTTCTTCCACCAAGCGTCGCGAGAATGTTTATTTAAATATGGAAGGTAAGAAAGGTGCTCCTCTACTGTTAGACAATGTCTCAATAAGACTTAATACTAACAGAATCGATAGGTTATTTGGAGACTAAGACATGACTACCATTGAGGATAGAGTCGCAAAGTTAACTGGCAAGGATGCCGAGATATTTCAGAAGTATGACTCTAGAGCACTAAGTGAAAAGGAAAAAGAAGCGCTCAGGAAAGCTCACCAAGTTTATAAGAAATACTGCAAGACCTAATCACAAGTCTTCCTTTAATGAAACTAGATCCCATCAAGTTCAATGTCCGTCTGTGGCAGGAGTCGGATGATTTATCACATTTGAATTGCAAGGAGCCAGATGGCTCTGACCCACTTGGTGTCCAAGAGTTTCTTGAAAAGAAGGCAGTCCAGTATCATAAAAGTAGGTTATGCTCATTATTCGTCACAACCTACGAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAAAGACGAATCCACCACAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA //