Array 1 14914-13558 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJWY01000007.1 Streptococcus vicugnae strain KCJ4950 NODE_7_length_17747_cov_18.013394, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 14913 36 100.0 30 .................................... GAGAACGCATTGAGAAAAATAAGCGTGAGC 14847 36 100.0 30 .................................... CTTCGAAAAAGGTACAAATTACCATCCGGG 14781 36 100.0 30 .................................... AAGACACTTTTTGAGGGTGGTGTTAGGTTA 14715 36 100.0 30 .................................... GTATTAGAAACATCTATACACCCCTTAGAA 14649 36 100.0 30 .................................... TTTAGGACTTTTAATTTCCTGTACCCAGTA 14583 36 100.0 30 .................................... ATTGTCACATACTATATGATTCTGAACGTT 14517 36 100.0 30 .................................... TCAGCAAGGTTTACAGACGTGATAGCTGTT 14451 36 100.0 30 .................................... TTGCCAAGCTCGTGTAAAAGAACTCGGTCT 14385 36 100.0 30 .................................... CGAAGCTCATAAGGCTTCTGGTGGGGCACT 14319 36 100.0 30 .................................... AAAATTAGAAAGCTGACACCTCGAGAATGT 14253 36 100.0 30 .................................... TTCGGCTATCAATGTATCGCACTAATCTCA 14187 36 100.0 30 .................................... TGAAGTTCTTGTTTTCATTCTGCCACCTTC 14121 36 100.0 30 .................................... GCACTAAAATAGCCAGCAAGTCAATCAACA 14055 36 100.0 30 .................................... CTGGTGGCTTGGCACTTGAAGCTCGTGTGT 13989 36 100.0 30 .................................... CGTCGTAGACCTTTTTGTTAAGGCCATTGA 13923 36 100.0 30 .................................... TGCCAGACTTGAAAAATATGGGAAAATCGT 13857 36 100.0 30 .................................... CATGCTTTTCTTCCTTTTGTGTTAATGTTT 13791 36 100.0 30 .................................... GAATTGAATATCTCTCATAAAGACGTAGCA 13725 36 100.0 30 .................................... AGGAGATTTATTGACACTATGCTTAGCATT 13659 36 100.0 30 .................................... CCTACGATATGTAGAAGAATATACTAAAGA 13593 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.9 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AACTTTCTTTATGATTAAACCAGATGGTGTGAAACGCGGACTTGTCGGTGAAGTATTGCACCGTATCGAACGTCGTGGTTTCAAAATTGAAAAATTGGAAATGTGTATGGCAACTCCAGAATTGTTAGAAAAACACTACGAAGACTTAGTTGACCGTCCATTTTTCCCATTAATCGTAGACTTTATGACAAGTGGTCCAGTGATTGCTGGTGTTATGTCAGGTGAAGAAGTGATTTCTTCTTGGCGTACAATGATGGGAGCAACAAACCCTAAAGAAGCTCTTCCAGGAACAATCCGCGGTGACTATGCACAAGCACCAGCAGAAGGAGCAGCAACATTTAACATCGTTCACGGTTCAGATTCACCAGAGTCAGTAGAACGTGAAATCGCTCTTTGGTTTGGGGAATAAAATAACAATAATAAGGAATCGTTCGGAGCTGAAGTCAGGCTGAGGCAAATGGCGCGATTACGAAATTTCGTGAGAAAAAATGGTCCACGAG # Right flank : AATTGAATTGCTAAATATGAATATAACAAAACCCCACCTAGTTTTTCACTGGGTGGGGTAATCTATGTGGGTCATAGGTTTGCGGTAAATTTGAAAGTTTCTACTATCTTTAATTAGATGATAGCGCTTTATTGAAGTTTTGTAAAGAAATTTGCGGTTCTTTTTGCCAGGTGATTTTTCTTGCTTTTAGGTCTTGTTACAAACTTTTTATAGCACCAGTGGTGTTTATTTGATATAATAGGAATAGTGATTAATTGTATAGGATTATAGGATAGATGGATATTCAAGAATTAAAAAAACGACAAGAAAAGATTCGCAATTTCTCTATTATTGCGCATATTGACCACGGAAAGTCAACTTTGGCTGACCGTATTTTGGAAAAGACTGAGACTGTTTCTAGTCGTGAAATGCAAGCTCAACTCTTGGATAGCATGGATTTGGAGCGTGAACGTGGTATCACAATCAAATTAAATGCTATTGAGTTGAACTACACAGCTAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 17222-15541 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJWY01000007.1 Streptococcus vicugnae strain KCJ4950 NODE_7_length_17747_cov_18.013394, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 17221 36 97.2 30 ...................................T TAATAACGTATCAGTAAAGGCATTCGTACA 17155 36 97.2 30 ...................................T CAGCAATCTGTCTGCCGTCAATTCAAATCT 17089 36 97.2 30 ...................................T TCTTTACCACCTGAAAATGAGACATAGACA 17023 36 97.2 30 ...................................T ATGCTTCAACAGAAAGTTACCTTGAAATTG 16957 36 97.2 30 ...................................T AGTAGCGTACTTATATTCAATGGTGTACAT 16891 36 97.2 30 ...................................T AGTCACGATTTCAAATTTAAGCGTGCGCAT 16825 36 100.0 30 .................................... TATTATATACTACTATCTAGTCAACGCTGA 16759 36 100.0 30 .................................... TTGTGTTTGTTGTCCTTGTTCGTCTTGCAC 16693 36 100.0 30 .................................... AGGGGCACCAACAACCAAACCTGAGCCTGG 16627 36 100.0 30 .................................... TCGTAGTTGATAACAACGGGTAGGAACTCA 16561 36 100.0 30 .................................... TTAATACAGTGCTTTCAAAATACTATGACA 16495 36 100.0 30 .................................... ATATATCATTTTTTCATTTTTTGGGTGGTT 16429 36 100.0 30 .................................... CCAAAAAAACTTACTTACATTATACCAGAA 16363 36 100.0 30 .................................... TGATGAAGCAAAATATATTGAAACCGAATA 16297 36 97.2 30 ................A................... TCTACTGGGTACAGTCATTCTGACGGGCTT 16231 36 100.0 30 .................................... GATTCTCCATTTGCTGTTAGTGTAAGTATT 16165 36 100.0 30 .................................... AGTCGACACCGTCAATAAAACCAATGTTTT 16099 36 100.0 30 .................................... AAACATACTAGTACAAGTAGATACTTTAAA 16033 36 100.0 25 .................................... TAATGCTTATCAGTCTTGAAGATAA 15972 36 100.0 30 .................................... TGCCTTGGTCTTGATAGGTATTGTTAAAGT 15906 36 100.0 30 .................................... ATTGATGAGAAATATCTCATGCAGTCAACA 15840 36 100.0 30 .................................... TGCGGTAAATCGCACGTTTAAGAATCAAAA 15774 36 100.0 30 .................................... TGCAAAATATATTAAGAAGTCGTAGCAATA 15708 36 100.0 30 .................................... AACTCGAAAAAAATCCAGCTCTTGCTAAAC 15642 36 97.2 30 ..............C..................... GCAGTCTAGATAATCCTCAAGGCAGTTCAG 15576 36 80.6 0 .......T......C...............TG.TGA | ========== ====== ====== ====== ==================================== ============================== ================== 26 36 98.4 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : GAAAAAGGTATCATGCTAGTAACAGGATTGGGTTGAATTTCCGGGTTTTGGTGGTGGAACAGAAGGAAGTGATGTCGAAGAAGCAATGAAAAATGCGCGTGAAATGTTAGAAAGTTCACTAGCTGCTTACTTAGATGAGGGACTAACGCTGCCGAAAGTTATCGATATGAATGAACTATCAGTTTCTGATGGGTTTATTTCTTTGATTCAGGCAGATCCGTCTCCTTATTTAAAAAGTTCAAAAGCTATTCAAAAAAATGTTACAGTTCCAGAATGGTTAGTCAGATTAGCTGATCGTGAACACATCAATTATTCAGAAGTTTTAACCCAAGCTTTGGAGAAAAAATTGCAATTGTAAATTATATGAATGCTTAGAAACATTGAAATATCAAGGTTTTTAAGGTATAATAGAGCTAACATGAAGGAGCTATTCGAAGCTGAAGTCTGGCTGAGACAAATGGCGCGATTACGAAAATTCGTGAGAAAAAATGGTCCACGAG # Right flank : TTTTTTTATCCATGAAAATCAACTAAAACTTTAGTGAAAATGCCTTTCAACGTTTTTCAAAAATTTTCTTTTATGGTAAAATTGAAAGTGAATTTATTTAGATAGGTTGGATTGTTTACATGGAAAAAACTTTCTTTATGATTAAACCAGATGGTGTGAAACGCGGACTTGTCGGTGAAGTATTGCACCGTATCGAACGTCGTGGTTTCAAAATTGAAAAATTGGAAATGTGTATGGCAACTCCAGAATTGTTAGAAAAACACTACGAAGACTTAGTTGACCGTCCATTTTTCCCATTAATCGTAGACTTTATGACAAGTGGTCCAGTGATTGCTGGTGTTATGTCAGGTGAAGAAGTGATTTCTTCTTGGCGTACAATGATGGGAGCAACAAACCCTAAAGAAGCTCTTCCAGGAACAATCCGCGGTGACTATGCACAAGCACCAGCAGAAGGAGCAGCAACATTTAACATCGTTCACGGTTCAGATTCACCAGAGTCA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //