Array 1 45869-45535 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDBJ01000024.1 Nocardia farcinica NBRC 15532, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 45868 29 100.0 32 ............................. CGGGCCAACCCCGCCCGCGAGCACAGCATGAG 45807 29 100.0 32 ............................. CCGGCGCCGGACCCCACCGCGACCGCCAGCCC 45746 29 100.0 32 ............................. GGGTTGACACTGGTCCGCAACGAGACCGGTAA 45685 29 100.0 32 ............................. CGCATCGTGACCTGAGCCTTCTTCGGCTTGAC 45624 29 100.0 32 ............................. GCCGCAACTTCCTCGCTCTGGGTGTGGCCGCC 45563 29 93.1 0 ..............T.T............ | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.9 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : GCTCACCCTGGATGGGTATGGAACGGTGCTCACCGAAGTCGCCGCAACCTTGGAACCGCATCGCCTGGCCGGTCACCTCTACGATCTCGCCCGAGCCTTCACGGCCTTCTACGACACCTGCCCCGTCCTCACCGCCCCCGACCAGGTCCGCGACAATCGCCTGGCCCTCACCCAGCTCACCGCCCGAACCCTCGCCCACGGCCTGGGACTCCTGGGAATCGCCGCACCGGAACGACTCTGAACAGGGGCGTGGTAGCCCGAACTCCGCCGACGAGGTCCTGTTGTTCATGCGGGACGACAAGCCCCGAGATTCCCGGCCCGGGAATGTGGGCATTGCTGGGCGGCTCGCGACCCCGGCGAAAGGCAACTTGAATGGGAGTTCCACGGGACCGGCGACGTACGATGGCGGCGGCCTGCCCATTCTGTCCCTCAGCGAGGTACATCGATTGAAAGTGAATGAAAACCGGGATTCGGGGCCGAGAACCCGCAGGTCAAGAAGT # Right flank : TGGCTCTCGTGTCCTGCGTCGACGGCTACGAGATGCCCCCGCGAACGCGGAAATGGCTGGGGCGCCGCTTTCCGCGGTCGTGAAGGCGCTGCCATCGCCCTCCCGCGCGGAGGTCGACCCCTTTGACGGCGGCTGTTCCAATTTCGGAGCAGGAGGGTCAGCTCACCCCCACCAGCGCCGCCAACGCCATTTCGCGTAGGGCCGGTCGGACGCGCTCCGCGTCGGAGGCGGTGGCGCTGTGCGGGGTCGAGTTCATCAGGCCGAACACCGCGTGGGCCCGTACGCGGGCTTCGCCTTCGGACAGCTGTGGGTGGACCCGCTGTAGCGCGTCCACCCACAGTTCGACGTATTGCCGCTGGGTGCGGCGGACGCGGCGGCGGGCGTCGTCGGGCATCTGGTCCAGGTCGCGGTCCTGGATGCGGATGAGTTCGGGCTCGCCGAGGGCGAAGTCGAGGTGGAAGTCGACGAGTCCGGCGATGACCGATCGCGGGTCTCCGCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 53759-53061 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDBJ01000024.1 Nocardia farcinica NBRC 15532, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 53758 29 100.0 32 ............................. AGGCGGTGCTCGAAGGTCGTGAAAACATTGCT 53697 29 100.0 32 ............................. GGCGGCGCCGCGGGCACCCGCACCCCCTCGAC 53636 29 100.0 32 ............................. AGGTCGCACACGCTGTTCACGAACACCCTGCG 53575 29 100.0 32 ............................. TCGCCGCCGTCGGGGTCAGGGACCTCGTAGGT 53514 29 100.0 32 ............................. CAGCTCAGAAAGCCGTCGAGCAGCGTGCCGGT 53453 29 100.0 32 ............................. AGTCCTCGAGGCGGCCCGACCACCGTGCCCCG 53392 29 100.0 32 ............................. GGCGTCACGGGGAATGTCCTGGTCAGGTCAGC 53331 29 100.0 32 ............................. CACAAATCGCGCACGCGAGGCACATTGTCGAA 53270 29 96.6 32 ..............A.............. CCTTGAGGCCGGAGTTCCCGCTCCAGCCTCAA 53209 29 100.0 32 ............................. GGCTGCTCGATTCCCCGTTTCGGCACGCCGCA 53148 29 96.6 31 ......................C...... CGGATTGCGGCTTTGTCGTCTCCTTCGAGCA 53088 28 79.3 0 ....CT.......GG.A...-........ | ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.7 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : ACCCGAACACAACCGAGCCACATCCTTGCCCGCGCCATGCGCCCGCACCAGATGCGCGGTGATCTGGTCCAGATCCAGATGCTGGGTGTCGATCAACTCGGTCTCCGGCGCACAGTGCGCCAACACCGCCGGATCGAGATAGGTCCCCGCGTAGAGACAGACAGGACTCGCGCGCAGCAGATTCACCGCACGCACGGTCAGCAGGTCCGCCGCGCCCGGCCCGGCCCCGATGAAATGCACGGTCATGAGGGCGAGTGTAGGGATCCCCGGATGGGCGGTCCGGGCTGCGGTGGTCATGGGTCGTCGCCGGACCAGGCACGTAGGGCGTGGTCGGTCTCTCACGCGACCCTTGGGAAGATCGCCGGCAACTGAAATGGGATCCCGCAGGATCGGCGACGTACGATGGCGGCGGCCTGCCCGTCTTGTCCTTCAGCGAGGTACAGCGGTGGAAAGTGAATGAAAAACGGGGTTGGGGGCTGAGAACTCGCAGGTCAGGAAGT # Right flank : GAAGGCTCGACGCGTTGTCCCGCCAGCGGGGTGCCCCCCGCATGCAGGGAATGTAGCGGTTGACGCCGGTAACCCGGAGGCCGGTTTCCTCTTCGACCTCGTCGACTTTGCCGCTGGGCAGTTCCCAGATGCCGCCCATGAAGTCGTTGCCGGGTCGGCGCAGCAGCAGGATGCGGCCGTCGTGTTCCACGATCGCGCCGACGACGAGTTGCTGGACGCCGTCGCATTCGGCTCGGGCGGTGAGGTCTTCGAGGCGGGTCGGCATCAGGTTCATCCATTTCGCCCGGAAGGAGCAGCCGACGGTTGGCGTGCGTGTCGGACTGCGTCGGTGTACAGCTCGGTGGTCAATTCCTCTGGGGTGACGCCGAGTTCTGTGAGGATCGCGCGCAGTTCTGCGAAGGCTTGGGGCAGGTCGGGTTCTTCGGCTTGGGTTTCGAGCTCGAGGTAGGTGCCGTCGATTTCCGGGACCTGGGCGATGGTGGCGAGCATGCGCCTGCCGG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 20311-21556 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDBJ01000079.1 Nocardia farcinica NBRC 15532, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 20311 28 100.0 33 ............................ CCCGCTCCCCCTATCCGGCTGGTAACCGGATTC 20372 28 100.0 33 ............................ TCCGAGCCCGACCAACCCCAGGTCAGAGGCACA 20433 28 100.0 33 ............................ CGCATGGACCCCGGCCACATGCGCGGCTTCATA 20494 28 100.0 33 ............................ CTAGGCGGTCACCGTGTTGCTGGGTTTGAATCG 20555 28 100.0 33 ............................ CCGAATTGGGTATCGAAATGGTTTGCCACGTCA 20616 28 100.0 33 ............................ CGCGGTCAGGCTGGTGTTGATCTCGCTGATCTG 20677 28 100.0 33 ............................ CGCCTGCCTAGGGAGTCCGCCGAACATGACAAC 20738 28 100.0 30 ............................ CGCCAAACCCACCACCACCACCGCGGCGAC 20796 28 100.0 33 ............................ CGCCGACTCCTTGGACTCGACGTAGTTCTTCAG 20857 28 92.9 33 AT.......................... GCCGAGGTCGATTCCGCGGGCGTCGGCGTAGGC 20918 28 92.9 33 AT.......................... CTGCTCGACACCGCTTCGCGTGAGGCACCAGGC 20979 28 92.9 33 AT.......................... CTTCCGCTTCTGACGAGCCGAACGCCGCTCGGT 21040 28 92.9 33 AT.......................... CCCTTCGACCGGTCGGGCGTCGTCCTCGAGGAC 21101 28 92.9 33 AT.......................... CGGGTTCACGGGCTGGGCGACCGGGAAGCGGTT 21162 28 92.9 33 AT.......................... CACCGCGCCCCAGACGGACGCCCACACCCAGGA 21223 28 96.4 33 .T.......................... TCACCCGGTCACCGTCCGCCACTCGGTGACGTA 21284 28 92.9 33 .T............C............. CTCGCCAGCGTGCCCGCGAAGGTGGCCGATGCG 21345 28 96.4 33 .T.......................... CGACGTCGAGAAGGCGCAGGCCCAGGTCAACTT 21406 28 96.4 32 .T.......................... CGCGAACGGGCGCCGCCGTCGTCGGGGAAGAG 21466 28 96.4 35 .T.......................... CCCGGTACCGCCGCCGCCACCCCCCCGCCCCCGCC 21529 28 89.3 0 .T............C...........T. | ========== ====== ====== ====== ============================ =================================== ================== 21 28 96.4 33 GCGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CGGGTGACGATCGAGGTCGACGAGGCAGCGCTGGCAATGGTCGGCGCGCTGCTGGGCACCGCGGGCCGGACGGAGGAGACGGTGAACGCGGCGCTGCACGAGGTGCTCGCGCAGCGCAAGCGCATGGCCGTGCTCGAGCGGATGATGGTGCGGGCGGGGGAGCGGGTGGTGCCGGCCGATCCGTGGCGGAAAACGCCCGCTTGGCCGTAGCGGTCGACTGCGGCGAGGTGCTGAGTGCGTCCCGGGGGGTGCATGCGGTACACGTCCAGGGTCGCGAGAGCGGAAACGAGGCTACGAGCTTCAACGGGCTCGTTGTGGGGGCTGTTGGAGCTCGCGGGGCCTCCCTTCCGGTGTTGTAGGCGTAGGTTGTGGGAACCTGTGCGGAGGCTCACGCGGGACGACGGAGGTGTGATGTATCAGGAGGTGGATTGCGGCGCGTGAGTTGGGTGAAAGTGAATGAAAACTGGGGTGGTGGGCTGAGAACATGCAGGTCAGGAAGT # Right flank : CCGACGACAACAACCTATGGGTGCTGTGCGACAGGTGCTCCCGCACGGGGATAAGCCCGCGACTTGGTCGCGTTCGGGCTGGGCGAGGTCGTACCCCCGCGCACGCGGAGCCGCCTTCTTCGGTCGGGGCAGCAAGCAACCGCACCAGCCGCCCGCTGGGCTCCGGTCGAATCCGCCGGTCCCACCAGCGGCCCGCGTCCTCGACCCTCGGGTGCGCACCTGGTGTCCGAAAACGGCTGGGGTGGCCTGGATCACCTCGCCGGGGTCGTTGTGCGGTCGGTGGGGGCTCGCCGTGAAAGTTCCCGGCGAAAGAGGTATCCTGCCGGAGGACGCATTCGCGTTCGGTCAGAATTGTGTTCGAACACGTCGTGTTCGGGCATATTGGATTCGAGCACACGCTGTGTTCGAGCAATGTGAAGGTTCCCCGGAACGAAACGCGGGGACGAACGGCGCGCGCGATCGGCAGGATCGCCGCCTAGGACGAGGAGGTGGGTCGCATG # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 52940-53333 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDBJ01000015.1 Nocardia farcinica NBRC 15532, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 52940 28 100.0 33 ............................ CCCGCGAAGCCTTCGCCGAGGCCGAAGGAATCC 53001 28 100.0 33 ............................ CGGGACCGACGTGGCGCGTGCCGAGGAATTCGA 53062 28 100.0 33 ............................ CCCCATGACCCCCACCGAGGTCGACGCCGCGTG 53123 28 100.0 33 ............................ CGGCAGGGCGAAGCGGGCGATGCCCGCCGACAG 53184 28 100.0 33 ............................ CTACGAGAGCAAGGGGATCGGCCTGGTCCTCAT 53245 28 100.0 33 ............................ CGGCGGATTCGGGGTGCGCTGATGCATCCGCTG 53306 28 92.9 0 ...........C........A....... | ========== ====== ====== ====== ============================ ================================= ================== 7 28 99.0 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : GTTCAGCCCGTTGTCCAGGCGATTTGGTTGCGGACACGCCGGTGGTGTAACTTTCATCAGGCGCGAGGGAAACCGAGCGCGACCCACCAAGGGGCTATGGCGCAGCTGGTAGCGCACCACACTGGCAGTGTGGGGGTCAGGGGTTCGAGTCCCCTTAGCTCCACTTTTTCTTTCTGAAAGCGCGTCCGAATGGGCGCGCTTTTTGTTTATTTTTCGTGGGCCTTCTTCACCCCGACGACGTGCCCGTCGTCACGGCGGACGGGATGCCGGAACACCGGCGCCGCCTGGCCCTGGGCTCATCTGAATGTCACCATGCATGTCGCTCGCTAAGGTGTGGGGCACCGTTTGGGCAGGGAGCGGAGGCCCTGGTTCACCAGCTTCGATGAAGCGGGCTGATCGCGATCGGCCGACGCGACGGTGCGTTTGTTGGGGAGGTGAGGAACCGACTGAAAGTGAATGAAAAAAGCGGACGTTGGCTGAGGAACTGCAGGTCAGGAAGT # Right flank : CCGGTCGACGTGGCGTGGCCCACGGCTCCCGCAGAGGAGGTGTTCGGCTGCGTCGTCTGCGTGTGCGCCGCCCACTGACATGTGTGGGTTTCGGTAGTAACCGCCGAAAACCAACGGATATGGCGTAGAAGCTGGTCGGCGCCGGTTCGTGTCCGGGGCCGAGGAGCGCGGTGAGCTTTCAATCAAGCGTCCACGGTTCCTGGAGGGTTAGCCTTTCCTGCATGAGCACGCCCGACACCGCACTATCAGCCGCAGCGGCCGGTCGCCGCCGCTTGTCCTTGGGTATGTTCGCGCTGGCCGTGATCGTGTATCTGGCGATCATCCAGCTCGGTGGTCTGTTGATGACCGCGTTGACCGGTGAGGACGATTTCCTGTCCACGCGCGCGGTGTTCTACGGCATGATCATCCCCCTCGGTATCGCCTTGGTATTCACCTACGGGTTGATTGCCTATCTGGGATGGCTCCACCCGGTCTTGCATGATGATCGCTCGGTCCGGTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 55039-55494 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDBJ01000015.1 Nocardia farcinica NBRC 15532, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 55039 29 96.6 32 ................T............ GAGCCGCTGCTGACCGAGGAGCACCTGGCCGG 55100 29 96.6 32 ................T............ TCTTCGACCTCCCGATCAAAAGCCCTCCACCA 55161 29 100.0 32 ............................. TGATCCGGGCGATCCTCGACGCCCTCACCGGC 55222 29 100.0 32 ............................. TGAGCCGCGATACCTATCGAGCTACGTAGCCA 55283 29 96.6 32 ....................A........ GAGAGTTACTGATCGGGATGACTTGAGGGTGG 55344 29 100.0 32 ............................. CGGCCACGGCGTCGCGTGTGGACCGGCGGCTC 55405 29 89.7 32 C...................A..T..... GAGAAGCTGATCGTCGCCGACCTCTTCACGCT 55466 29 75.9 0 ..............T..T.C.TC.C.G.. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 94.4 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : GTGGAGAAGCCGCCACAAGGCCACTTCTTCGCCTGTTCTACCGGTGCGGTATCGACATCATCCGCGAACCAGTCGTCCTGCTGAAGTCGAACTTATTGAAGCCGCCCTCGACGCCTTGGCCAGCGTCGGGCTCGGCGACATGAGCGGCATCGAAAGGCGTGCCATCGAGCGCGTCTTCTGATGGAGTGGGAGGGGATTCGAAGCCTTGGCACGCTACCGGCAGGGCTGTCCGGTCGCCGGGCTGCGTCCAGAGTCCGGGCAAGAAGCGGCGCAGTTCGGCTCCATGTCTTCCATTCCTTTCTGGTCCGGTTGGGCCGCCACCGTGTGCTCGGCCACATTAGGGTAGTGGCGACGTTCGGGAGGGGGCCTTGCGCGTCGAGTCAATGGCACCGTGTGTCTGGCTGTCGACCGGTGCGATGGTGAATGTCAGGGAGGTGAGGAGCTGGCTGAAAGTGAATGAAAACTGTGGACTCGTGCTGAGGAACTGCAGGTCAGGAAGT # Right flank : CGAGCGGGCGATGCAGTTGCCGATGGTCTCGAACAGCATCGGTAATCCGCGCGACCGGCCGCGACCCGGAGCCCGGTCATCAGGTGGGGGTCTTGCCGGTGCCGCGTGGGTCGCGAGAGTTCAAGTCCTTGGCGTGGGACGAAGGCACTTGGTCAACATGGGTCTATGGGCTTCCGTGGCGGTTCGGAGAGGCCGCCGGAGGCCGCGGAGTGACATGCCGTGCGGCGCCACGGATCAGGTTGAGCCGCAAGGGCAAGTCCGCACTACCGAGATCGGCCCCTTTCCGCCGCGTCAGTGGATAGCATTGTCCACGTTGCCGATGAGTCCGAGCGAACCTGAGATATCAATGGATTTCGACGAGATCGACTTCCTGCGTCGCAGCGATCCCGCATGGCGGCTGTTGCGGGCTGACCACGCGCCCCTGGTCCTCAGTTTCTTGCGGAAGGTCTTCGTCGTGGACAACGTCCGGGCGATTTCGGCCACCGAGCTGGCCGGCCGTC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : GTGCTCCCCGCGCACGTGGGGATGAGCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 66454-67046 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDBJ01000015.1 Nocardia farcinica NBRC 15532, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================== ================== 66454 29 93.1 32 .......T....G................ AGGTGTCAACCGGGGCACCACACACCACAAGG 66515 29 96.6 32 ............G................ CGGCCCAATCGGGGCACCCAAGCTGATGTACC 66576 29 96.6 32 ............G................ GGGCGCGAGACGGTGGCGGCGGTGCGGTGGCG 66637 29 96.6 32 ............................T CTAGCGCGCGCGTTTCGGGTGTCTGCGCCCTC 66698 29 100.0 32 ............................. GGCGCGAACGCCGCGCTCGGCGCGACTCTCAT 66759 29 96.6 32 .............G............... GTGAACACGGTGACCGGCCCGTACCGGCTGTT 66820 29 100.0 32 ............................. GTCATCCCGCCGCCCGTGGTGTTGACCGCGTA 66881 29 96.6 32 .............C............... CCTGCCCGAATCCCCATCCGATCTGCTCAGCG 66942 29 93.1 46 ..........T..............A... AAGATCTGCATGTAGGAGGACCGTCGTTCGGTGCATCGAAGTCGAC C,T [66947,66970] 67019 28 75.9 0 A.......G..A..T..-C...C...... | ========== ====== ====== ====== ============================= ============================================== ================== 10 29 94.5 34 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : GAGAGCTGATGACCCCTCGGTCGCACCTGGCGTGGCGTTCCTTCGTCGCCATGAGCCTCGGTGGATTCATCGCCCGACCGGATGGTGACGTGCGGTGGCTCGAAAGTCTGCCGACGGACAGAGGCCACGTCACGACGAGCGCAGCGAACCCCGCCCTGGTATGGGAGACGTTCTTCCCCGACATCGACGCGCTGGTGATGGGGCGAAGCACGTACGAGAAGGTGCTGACGTTCGGCGACTGGCCCTTCCCCGGTCTGACAACGCTGGTGCTCAGCAATGCGCTCGACACCGACGACGACAACATCGAGCCGGGGCTGTCTCCGTGTGCTCGGCCTTATTAGGGTAGTGGTGACGTTTGGGAGGGACCTGGCCCGTCGAGTCGATGGCACCCGCGTGGCTGGCTGTTGACCGGGTGCGATGGTGAATGTCGGGGAGGTGAGGAGCTGGTTGAAAGTGAATGAAATTGTGGACTCGGGCTGAGGGACTGCAGGTCAGGAAGT # Right flank : CGGTCCGCCGATACCGTCATCGACCGATCCGGGTGCTCCCCCGCACGGGAGCAACCCCTCGGCTGACAACACGCACCGCGCCGCGTGTTGCCCGCGCCTGCGGGCGGTAGGACACACGACGACCGAGCGGCCGAGCGTTCCAAATTTTCTGGTTTAACTCCTGCAAAATCGGGTATCGCTTGCTATCCTCGCTCATGTCCCGCCGCCCAGTTCGCTCGCTCAATCAAGGTTGTCGGTGGGGTTCGTTACCGTGATCCGTGACAGGGGTGGAACGATTCGAGGGGGAATTCGGTGCTCGGTACCGCGACCTTGTCTGCGTGGGCGAAGAGTGATCGCGAGGGTGGAAGCCTCTCTCTCGTAAGACATCTCGCTGATTCCGGTGAGGTCGCGAAGTTGGTCTGGGACCGTTGGCTGCCGGCCCATACACGGCAGCGGATCTCGGTCGGCCTCCCTGGCGGCGAAGCGGATGGACGGACGCTGCTCGTCTGGCTGGCGGCTAC # Questionable array : NO Score: 5.34 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : GTGCTCCCCGCGGACGCGGGGATGAGCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 76231-77295 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDBJ01000015.1 Nocardia farcinica NBRC 15532, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 76231 28 100.0 33 ............................ CCGCGAGATGCTGGAGCGGCTGATGAAGACCCG 76292 28 100.0 33 ............................ GGCAATTTTGGTGGCGTGCTCGTAGTAGACCGG 76353 28 100.0 33 ............................ ACTGTGATTGACAGTGTGGAAATCTACGTATGC 76414 28 100.0 33 ............................ CGACACGACCCTGCAGCGGATCGTGATCGCCTG 76475 28 100.0 33 ............................ CCAGCCGCCGCTCATGATCGGCGAGGAACATCA 76536 28 100.0 33 ............................ CAGCCCAGCGCAGCGACCACCCGACCAGGTGGG 76597 28 100.0 33 ............................ CACGGTCGCCCGAGCGATCAACGAGCTACAGAA 76658 28 100.0 33 ............................ CGCCTTCGACCCGGCCGACATGACCGCCGCGTC 76719 28 100.0 33 ............................ CGCAGGCGCGAGCGCAGCTCGCGAACGACGGCG 76780 28 92.9 33 ..........................AA ACCGGCGTGCGGGAAAAGGTGCAGGCCGTGGTA 76841 28 100.0 33 ............................ GGCGAGACCCACGGCCGCACCATCGGCATCGGC 76902 28 100.0 33 ............................ CGGCGGCATCACCCGCACCGTCACCATCCAGCT 76963 28 100.0 33 ............................ CCTTGACCGGGGTGTTCGCGCGTTCGGCTTCCC 77024 28 100.0 33 ............................ CCCGATGACCGCCATCCCGCCACCCAAGCGGAC 77085 28 100.0 33 ............................ CCGGTCCTCACCCGTGTCGGGCCCGCGGTACTG 77146 28 96.4 33 ........G................... CTCGAACGGCAGCGTCCAGAGGTCGCCCTCGGT 77207 28 100.0 33 ............................ CCAGCCAGCAGCGAATGCGTTGGCGGTCAGCAT 77268 28 96.4 0 ....................A....... | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.2 33 GTGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : AGTGGGACACCGACATCGTCGAGCTGTGGGACCGCAAGGGAAACGTCGCGGGCGGAACCTCCTACAGCGACGAGGATGTCCCGTGGTAGTTCTCGTACTCAGCGCATGCCCCGCCGGCCTCCGCGGCCACCTCACCCGGTGGTTCCTCGAAATCAGCCCGGGCGTATTCGTCGGGATCGTCAGCGCGCGCGTGCGCGAACTCGCATGGCAGCGAGTCGTCGAACTCGCCAAGGACGGCCGCGCCATCATGATCCACTCCACGAAAGGAGAACAGCGCCTCGCGTTCACAGTCCACCGACACGACTGGGAGCCGGTCGACTTCGACGGCCTCCACTTGATGCGCCGGCCGCACACCAGCGCCGTCAGTTCAGGAGGCGCACGGGCCGGCTGGAGCAAGGCCAGCCGGTACCACCGAGCCGCCCGGAAACGCGCGGCCGGTGGGGGTGCGGAAAGTGAATGAAAAATGGGTGATCGGCTTGGAAACGTGCAGGTCAGGAAGT # Right flank : CCTCGGAGGTAGTCACCCGTGAGCGGGACGGACACGGGCAACGAGCACGCGGTTGAAGGACATCGTGACCCGAGGCGATACGTTGTCATCCACAACGGCGGCGAGACGCGAAAGGACTTGGTTGATGCGGACGGACAGCTGATCGGGCTGCAGGACCATCCGCGAGCAAGGATTTCGCGGATGGGCCTGGCGCAGCTCCACGTGCCGAGAATGGGGTGAGACGTTGCGCGCCGACCTGCACCGGCTCGGGGAGGCGGCCGCGTCGACGTTAGGTAACGACTGCATACACCTCACCCCCCGGAGATAGCTATCTGATTGCGGCGGGGTCGTGTCGAGCCCGGCGGCGTTAGCCTTGGTACTTCGCCAGAGCAGGAGCCTCGAGCAAGGAGGGCCGCCATGCGCGGACGGTTTACCGGATTCGCCGCTGCTTCGGCCTGCGCGGCGTTGTTGGTTCTTCCCGGCCTGGGTGCGGCGTTCTCGGCGCCCGGTCTCCCGGTCGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //