Array 1 48-1051 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEQBF010000043.1 Acidithiobacillus sp. MC6.1 NODE_43_length_20964_cov_38.005602, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 48 28 100.0 33 ............................ TTTTTCGCCAGCTTCGTGATTGGCAATTTGTAG 109 28 100.0 33 ............................ TCAGGGCCAAGACCGGGTAGGCTCTCACCCCAC 170 28 100.0 33 ............................ CTGTACGGTCCCGATCCGGGCCGGGCCGAGTCT 231 28 100.0 33 ............................ CACTTGCGGGATTTACATACGCAGGCCTTGGCC 292 28 100.0 33 ............................ TATCTGTCTCTGTACGTAAGCCGATATAACCAA 353 28 100.0 33 ............................ TGAGCCACTTGAAGACAAATGAGCCACTTGAAG 414 28 100.0 33 ............................ CGAGGATTCCTTCCTGCCAACAGGGATCTGACC 475 28 100.0 33 ............................ CGAAATGATCACCACGACTCTAGCACGGATCAG 536 28 100.0 33 ............................ CGCTTCCTTCCATGACGTCAATTCCGTCAAGCG 597 28 100.0 33 ............................ CAAGAAACGGATGCGGGGAAAAAACTATAGTGA 658 28 100.0 33 ............................ CAAAAGAAGAACGTAAAGAGGTATTCTTTGTAG 719 28 100.0 33 ............................ CGTTGTTGTCCCCGGTTGTGTTTGACTGTAGTG 780 28 100.0 33 ............................ CGTCAGTGTAATCCCTGCGGACAAAGTCCCGGG 841 28 100.0 33 ............................ TGATCACAACGACACTCAACCGCATCAGAGAGC 902 28 100.0 33 ............................ TACTATTTCCATCTCTTTTACTACACCGTGCAG 963 28 100.0 33 ............................ TCTTGGCGGCGATTGCGGCCAAGTTGGGTTCTT 1024 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 17 28 100.0 33 GTCTTCCCCACGCCCGTGGGGGTGTTTC # Left flank : AACACAAGTGGTTGTGGTTTAATGTTGCTCATTAACAATTTGTTGGCG # Right flank : CTACCGGCGCTGTCATCAATGGACTTTTCGGCGCGTCTTTCCACATTGTGGAGGGCAGCCTCATCCAGGGCAAAGAACGCCTACGAGTGCTCACTCAGAAGGTGCGCATAACGGCTCGTAATCGTCAGATTCCCGTGCCCCAGGTTGTCCCGGACCTGCACCATGTCCATGCCCATGGCCAGCCAGCGACTGGCGGCGGTGTGCCGGAGTAGGTGCGGACCCATCTGCGGCTTCTGGATGTTGGCGCGCGCGAGAAGGGCGCGGATTTCGTGATAGAGGATCACCGGCTGCATGGGCGTGCTCTGGTCCGTCATCAACAGATGATCGCTCGTCTGGGTCAGGCGGCCACGAATCTTGAGCCAGGTGCGCAGGGCCGCTTCATGCTCGGGCGTAAAGCGGACCAGACGTTCTTTGTTGCCCTTGCCGGTCACGCGCAGGTGTCCCTCAAAGTAGCCTTGGGCTTCCGCCACCCGTAGCGCGCAGATTTCCGATGCGCGCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1871-103 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEQBF010000090.1 Acidithiobacillus sp. MC6.1 NODE_90_length_12107_cov_49.185370, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1870 28 100.0 32 ............................ CACACCATTCCCGCCATTTCGCACATACTGAT 1810 28 100.0 32 ............................ GTGGCTGCTGAAGAGGTTTTGAGACTGTACGC 1750 28 100.0 32 ............................ AGCAGGTTACAAGCACTGCGATTAATTGGCAC 1690 28 100.0 32 ............................ TATATCGGCGGAAATACGGTGGTGCGCGTCAC 1630 28 100.0 32 ............................ CTTGCAGTACAGGCGGCGTTCTCCGTGGACAC 1570 28 100.0 32 ............................ TACTACGGAACGATCGAATTGTGGCACGAACA 1510 28 100.0 32 ............................ GCCAGAGCATACTGCTCAAGCTTGGTGAGTGA 1450 28 100.0 32 ............................ CAGACCCCGAAGCAGGACCAGATCCTGAACGC 1390 28 100.0 32 ............................ ACCCCAGCAAACCGTGGGGGAGCAGTCCAATA 1330 28 100.0 32 ............................ AAGCGGCGACGGCATGGGTGCTATTGACAACC 1270 28 100.0 32 ............................ GCGATCAACAACTATGACCGCACGGGTACCTC 1210 28 100.0 32 ............................ CAAAAAAGACCTTGCCAGCATGAAGCCAGCAG 1150 28 100.0 32 ............................ GTCCTGAAAATCAAACGTCATCGCTGCGGGGA 1090 28 100.0 32 ............................ AAATGGTCGGCGACAATGGCGCTCACCGATCG 1030 28 100.0 32 ............................ TTTCGCGAGATTAGTTGGCGCGGGAGAGAGCG 970 28 100.0 32 ............................ ACTACCCGGTAGAGCGCAGCCTTGCTATGGCC 910 28 100.0 32 ............................ ATTCCATATATGCCACGGCTGGGGCGACTAAA 850 28 100.0 32 ............................ GTGGAATGCGGGGGGGAATGGCACCAACAATG 790 28 100.0 32 ............................ TCGTCCAGCAAACAGGACTTGCAACATGGTGT 730 28 100.0 32 ............................ GTCAAAAGAGCTGGCCGAGCAGAACGCGGAGA 670 28 100.0 32 ............................ AATGGCAGACAATCATCACCAATGTCCGCGCT 610 28 100.0 32 ............................ CTGACTAACATGAAGGTGATGGGCGCTAATTT 550 28 100.0 32 ............................ CGTAACTGAGAATTGAACGTATTCACTGCCCA 490 28 100.0 32 ............................ TTTACACGCTCCATCTTGGCCGTCATGATGAC 430 28 100.0 32 ............................ AGTACAAAAGCGTTCTGAGCAACTGGAGACAA 370 28 100.0 32 ............................ ACATAGAGCGCGGAGACATAACGCACTGGCGG 310 28 100.0 32 ............................ AAGCCGTATTTATTTGGCACCAGCAGCACCAG 250 28 100.0 32 ............................ CGACCGCCAGCAACGCGGCATACAAGCGCGCT 190 28 100.0 32 ............................ CTCTCTGTCAGGCAGCTCGCCGGTAATCGCAT 130 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 30 28 100.0 32 GTTTATCGCCGCGTAGGCGATTGAGAAG # Left flank : GTTCGCAAAGGCGCTATACGCGGCTCTAGCGTCTGTCTATTCTATACCGAAATTCATAAGAGATGCCGGAGCCAAGAAGAAAGACAATCCTGAACAGAGGGTGAATAGCTTTCTGGATCACGGCAACTATCTCGCCTATGGATATGCCGCAGTGGCGTTGCATGGAATGGGTGTACCCTATTTCCTGCCAGTGCTTCACGGTAAGACCAGAAGGGGTGCATTGGTGTTCGACGTAGCAGATCTTTTCAAGGATTGGCTGGTGATGCCGCTGGCGTTTCGATGTGCATCTGAAAAAGCAAAAAATAACCAGTTCAGAGCTGAGGTAATCGAGCATGCCCTGAAGCATGAGGTGTTGGATGATGTGATGGGCTTCATTTCTAGTCTTCCAGATAAAGTAACATGAAATCAGTAAGTTATGATTTATCGCGGAATTCGATGTGTTTACGTCAAAAAGACAACCAATGATATGATTATTATAGACTTTGCACTTTGAAAGTCTA # Right flank : GTCAAATATGGCATAATTATTATAGAGGGCGCGCTCAAAACTGAAGTGCAACACCTTTGGTCCAAGGAGGCTGGAGGTGGAATATGGGCAGCAAGTATCAGCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATCGCCGCGTAGGCGATTGAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 48-258 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEQBF010000953.1 Acidithiobacillus sp. MC6.1 NODE_956_length_307_cov_44.539130, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 48 28 100.0 33 ............................ TTATCAATACCGTTATTTAGTGCCGTCGATGAG 109 28 100.0 33 ............................ TTTTGCCCCGCGCATGCAGAGAAATTGAGTTAA 170 28 100.0 33 ............................ TATTTATCGAGCGTGTTTCCGTCGATTGGGTTG 231 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 33 GTCTTCCCCACGCCCGTGGGGGTGTTTC # Left flank : AACACAAGTGGTTGTGGTTTAATGTTGCTCATTAACAATTTGTTGGCG # Right flank : TACTATTTCCATCTCTTTTACTACACCGTGCAGGTCTTCCCCACGCCCG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 49-198 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEQBF010000975.1 Acidithiobacillus sp. MC6.1 NODE_978_length_299_cov_39.337838, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 49 28 100.0 33 ............................ TTTACTAAAAAGGAGAGGAAATAATGAGTATAG 110 28 100.0 33 ............................ TCTGCTTCTCGATCATCGTGAAGAGGTCGGCGG 171 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 34 GTCTTCCCCACGCCCGTGGGGGTGTTTC # Left flank : CCGTGGGGGTGTTTCTACTATTTCCATCTCTTTTACTACACCGTGCAGG # Right flank : CCAGATCTCCGAGCCTGGGGTCGACTCAGAGTTGCGTCTTGGCAATGGCGCGTAGTCTAGCGGGTGCGAATCCCGTCCAGGTAGCCGCTAGCCACGGGCCT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-11.70,-11.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 27219-24968 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEQBF010000028.1 Acidithiobacillus sp. MC6.1 NODE_28_length_27304_cov_41.963382, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 27218 28 100.0 32 ............................ TGCCAAAGATCAAAAGGCGAATTAGGCCCAAC 27158 28 100.0 32 ............................ AACTCGATGAGCCGCTGAAATACAACCACATC 27098 28 100.0 33 ............................ CAGTATTCGTTGCGTAACGGTCCCCGCTGGGGG 27037 28 100.0 32 ............................ CGGCCATCCATCAACCAGTGATCATGGATAGC 26977 28 100.0 32 ............................ CAAACATCAGGAGCAGCAGAAGGTGAACGCTT 26917 28 100.0 32 ............................ TTATAGTCCGAGCGGTTAGAGGATGGGTAGCG 26857 28 100.0 32 ............................ TTGAGCGTTGGCGTGAGAATCAGGTGCATCTG 26797 28 100.0 32 ............................ ATTGGGATAACCAGTGCCGCCAGCGCCGCCAG 26737 28 100.0 32 ............................ ACCCGCTGATTGAGCGGCAAGGCATCCTTATC 26677 28 100.0 32 ............................ ATGCAGGACTTGCGTCATGCACAGGAAGTTAT 26617 28 100.0 32 ............................ CAGCCCAGCGTCCCGGATAACTCTGGCGTACC 26557 28 100.0 32 ............................ TAAAGGTCGCCAACAACGACAAAACCCGCGCT 26497 28 100.0 32 ............................ CCGTTCGGAATGGTCTCGGCTGAAGTGAAAAT 26437 28 100.0 32 ............................ ACGCTGATTCTGATTCCGATGGCTCAGAACGC 26377 28 100.0 32 ............................ TGCATTAGCAACGACCAATTGCACGCCCGTTA 26317 28 100.0 32 ............................ TCGCAAATTGCCCCGGCTCCCGGAGCCTTCCC 26257 28 100.0 32 ............................ TCGTCAACAAAATAGCGTTCATTGATTACAAT 26197 28 100.0 32 ............................ AATCTGCACGGGGCCGATCTGTACGGGGCCAA 26137 28 100.0 32 ............................ AACGCCTAAAAGCTGCGGAGGATCGGCGTGTG 26077 28 100.0 33 ............................ TATCTGGACCACTTTGATGCTTCCCTGGTCCCC 26016 28 100.0 32 ............................ CTACACGCGGAGTGCGACCGTCTTACCGCGAT 25956 28 100.0 32 ............................ ATTTTATGGCTTGCATGGGGACCGAGAAAATG 25896 28 100.0 32 ............................ ATTTGCCGGGTGAAGTGCGCTACGTGATGGAT 25836 28 100.0 32 ............................ CTGACGACAGCATGGATGAGGTGAATATTTCA 25776 28 100.0 32 ............................ TTACACCCAGACGGTGGTGCATCATGAATCCG 25716 28 100.0 32 ............................ GGCTCAGTGATGTGGGCGCGCACCCCATAGCA 25656 28 100.0 32 ............................ TCGTCGGGGTGATAGCCTTCGATCGGCACGGC 25596 28 100.0 32 ............................ TGTTCTTCTGCCCGTGATCGTGCGCTCGGTTT 25536 28 100.0 32 ............................ ACCGCGGAACACCAAAAAGAAACGGAAAACCC 25476 28 100.0 32 ............................ AACATAAATGCCGTTGATGTAGCCCTGAATGG 25416 28 100.0 32 ............................ GTCTGACGCACGGATACCAGTCGTGGAATGAC 25356 28 100.0 32 ............................ GAGCGCGGCGGCTTGCTCATCTGTCAAAGTCA 25296 28 100.0 32 ............................ ACGGCAAGCGTGGCGTTGCTGGTTATGGATAC 25236 28 100.0 32 ............................ TTGCGCTGGGCCTCAAGCTCTTCGCGCTCGAT 25176 28 100.0 32 ............................ CACATCAGCACGAACGGCATAGACCATTCGCC 25116 28 100.0 33 ............................ CGTAAACTGCAAACTTGGCAATTCGAGGCCGCT 25055 28 100.0 32 ............................ AAACCAAATTCAGTAGCCTTCCACTGAGTCAC 24995 28 78.6 0 ...................GG...TCCA | ========== ====== ====== ====== ============================ ================================= ================== 38 28 99.4 32 GTTTATCGCCGCGTAGGCGATTGAGAAG # Left flank : TCGGACACCCGCCGAAGTTATGGCACAACAAGTCAGAGAGTTACATGCGGGTGTTGCACTTCAAACTTGAAACCGCCGAGCAATA # Right flank : GTTTGGATTCGATCACTTTGCTGGCCTACAATCGAGCATGGATATCATTGCCCGTTTACATGAAAGGTCAAACGCACACCACACGCGCCCATTTTTGCTCATCCCATCCCACACACCCACATCCACCTTAAACAGCGAAAGAGAAACCTGCCATGACTCCTTCCACCCTAGCTCCTCTCCAGCAGCGGTTGCGCCAGTGGCTCTCTTCTGAACGGATGGCATGGCTCGCTCCGCTTTCCGGCTGGGTTCTGCTGGTAGCGATTTTTGCAGGAATTGAGCAGACTGGACTCTCCTATACCGATCTCCACCAAGGTATACCAGCGGAGACGGCGATTTTTGCGGTTTCGCTTATAGTGCTTACTGCCTTATTTCTGGTGATCTGGCGGATTCTTGTCTTTCGCCAGAACGAAGTGTGCAGCCAAGCCCGATTGACGGATTTCAATGCCCTCCTCGCCCAGGTGCATCAAACCATTGCCCAGGCAGAAAACGAGACTGCCCTG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATCGCCGCGTAGGCGATTGAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 9169-9555 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEQBF010000039.1 Acidithiobacillus sp. MC6.1 NODE_39_length_22250_cov_36.112254, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 9169 36 100.0 36 .................................... ATCTTAATAACCCCAAACAATAATATTACAGGATAA 9241 36 100.0 34 .................................... CGGCATCGGTCAATTCATGCCTGCTACCGCACAA 9311 36 100.0 33 .................................... TGAGTTCGCCCATAACTACATGAAATATGCCTT 9380 36 97.2 34 .........................G.......... ATAGTCCTACCGGCAGCGTAACCAATGCCGTGGG 9450 36 97.2 35 T................................... TGCACACCCCTGGGCTCAGTCCCTGCGCTGTCACT 9521 35 91.7 0 .........................GC....-.... | ========== ====== ====== ====== ==================================== ==================================== ================== 6 36 97.7 35 ATGTAATCCCCATCCCAGCGGGGTAATAGTTGGGAC # Left flank : GTATGTTCTGGAGATGGCGATTCGCTGGGCCGCAGAAAAGTGGGGGGCTGCGGTGCTGGATATCGAAGGCGTAAAAACGACGCAGACCTGCGGCATTTGCGGAGCAGAGGATATGGATACCGACGCGGAGGACAGCCAGGTGTTGCATTGTGCATCCTGCGGCGCTGTCGTTGACAGAAAACAGAATGGCGCAGCCGTTGCCTGGCAGACTGTGATGGAAAACCGGGAAAATTTAGTAACGGATTATTGGGCGTTAAAACTGGAGCAGGAACGGGATACCGGAACCCGCAAGACGGAACGACTGGAGAAAATGCAGGCGGCGCGGCGTGCCAAACGCGAACGGACATCAGCGGAATAGTTCCGGCAGGTTCGCGGTGTTTGTTTTTATGGGGATTCCGGATGACGCCACCAGCGATTCAGGCTTGCTTTTGTGCCGACGGAGTGCGGTTCGCGGGTTTATTCGGTTTGACATAGGCAAAACAACATGATACACACAACGG # Right flank : CCCCCTAGCACTTTTCCCAGATAAAGCAGGCCGCCGCCTAGGTGAGGCGGAAAGACAGTCCATCGCCCTGATCAGCCGCAATGCCCGCGCCACACCCGTCAGCCCACATCGTGTTATTCCCCGGTTCCCGCAAAAAAATAGCCCGGCATTTTCAGAACAAAGAAAAACGCTTATTCGCGGATATAACCCTCTACGGTGAACCCGTATACCGTAGGGGACACGATGGGGCACTTTGCGCAAAGTCAACCGTTTTATCATTATGAACAGGAGTAGTTTCAATGGGATATCAAACCAGAGGTTGTGAAGAGGCTGTGTCCAAAACCATGACGCGGAAAGATGGTGTGCAGTTGATCGTCACCATCCCCGTGTATGAACAGCCGGAAATCCAACAGGACAGCAAAGTGCTTCTGTCGGCACCCGCACGGCATGAGCCGAAAAGTTTTGTGATGGATCACCGGCGATTGCAGCGTTGGTTTACCGGCATTGCCTTGTCGATGCTG # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTAATCCCCATCCCAGCGGGGTAATAGTTGGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //