Array 1 7762447-7762721 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGMS010000001.1 Amycolatopsis magusensis strain DSM 45510 Ga0197551_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 7762447 29 86.2 33 T..............A...G........G TCGGCGAGGCGGTGCAGGAACAGGACCGCCTCC 7762509 29 100.0 32 ............................. TGTGACATGGCCCGACTCGATGCACTCCTATC 7762570 29 89.7 33 ...................GA.......C GGCAGCCCGCCGAGGACGGTGCCTTCGTCGTTG 7762632 29 89.7 32 ..................AG....A.... TCCACGTAGGTTCCCGTGACCTCGCGAAGTGT 7762693 28 72.4 0 ........T....-.AGC.G....T...G | C [7762717] ========== ====== ====== ====== ============================= ================================= ================== 5 29 87.6 33 GTCTTCCCCGCGCGAGCGGAGGTGGTCCA # Left flank : GACAGTCAATCAGTCCGAAGTGCTCGTTAGTGCATTATTGAACTAGTTCAGAACTGTACCACCTGAAGGAAGGGGCTCACGTGTCGGCTGACGCCGCCCAGCTGTGGACGCTGAACCACCGCCTGCTGACCGTCGTGATGGACGCCTGCAGCGCGGAACTGGCCGCACTCGGACTCGAGACGAAGGAGTTCTTCGTGCTCGCCGAGGTTGCCGCGTCGCCGTACCCGGCCGAGCTGGCGGCGACGCTGATGATCCCCAAGGCGAGCGTCACGGTCTACGTGCGCAGCCTCGTCGCGAAAGGGTTCCTGCGACGCGAAATCGACGACGCGGACCTGCGCCGGCATCGACTGGTCCTGACCACCGAGGGGCAGGCGGCGCGCGACCGCGCGCTCGCAGCACTCGCGACGGAGTTCGACCGCAGGCTGGCGAAGATCGAACCTCGCGATCGCACCGAACTGCGGCGCATTCTCCTAGCCCTGCTAGAGCCCGCGCAATAGCTC # Right flank : GCTGGCCCAGCGCACCACGCATGGGCGGGCATGGCCGGGCCCGCCATGCGTGCTCCGGCTTGGATACGCGGCGCGGGTCCCGGGGACGTCGTAGGTGAGCAGGCCGGTGCTGCCTCGGCGGCCTTGTCCACCGCGTCTTGGATCCAGGGCAAGGTGACCGAGGAGGGGCTGATCGCTGGGGGAAGGTCACCGTGATGCAGGTCGGCGTCTGCTGATGGGCCGGGGCCTCGGCAGTCGCCCAGGACAGCCCCAATCGTCGCGCACTCCCCGCCGGCGGCGGTGACCAGATCACCGATGTCATGCGGGTGACTCACCGCGACCTCCGGCGCTGCGAGCAAGCCGACCGCCAGGGTGCCGCACAGGCCGCAGCCGCGGTCCGGCTTCGCGGTGAACTCGAGCAATGCGTGACCGTGGCCCGCGGTGGACACGCCGGGCAGCAACACGATGTCGACCTCGTCGCTGTGGCACAGGGGCCGACTGGGTGACCGAAGCGGCGCCCG # Questionable array : NO Score: 3.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.38, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGAGGTGGTCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 7800865-7801370 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGMS010000001.1 Amycolatopsis magusensis strain DSM 45510 Ga0197551_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================================================== ================== 7800865 29 100.0 32 ............................. GCGGGGCTCACTCGCGCCTCTCCCCGGTCACC 7800926 28 79.3 30 ..-......A...........TG..C.G. CGACCAATGCGGACTTCGGCCAGTTTCTCG 7800984 29 89.7 32 .G......................G...C CCGTTGTTCTCGTTGTCCGAGTCCACGCCGAG 7801045 29 93.1 32 ........................C...A ATGAAGTGAGTGGCCAGCGTTCCGGTCACGTC G [7801067] 7801107 28 89.7 32 ...................A.-..G.... CAGCTGCCTGGCATCGTCGGCGCCCGGTACGA 7801167 28 86.2 32 .....-..............AA..C.... TAACACTTCGTCACCTGGAGGTCGAAGTACCG 7801227 29 75.9 83 T.......T..A..C......A..GG... CCGAGGTTCGGATTGCCGGCTGCTCCATTCTGGTGTTGTCGCCGTATTCACCAGGGCGATGTGTCTGCCGGCACGACAAACTG CGTC [7801245] 7801343 28 58.6 0 .G.....G.C..-.C....TC.C.CCGG. | ========== ====== ====== ====== ============================= =================================================================================== ================== 8 29 84.1 39 GTCTTCCCCGCGCGAGCGGGGGTGTTCCG # Left flank : TCCTCGTCGAGCCACAGCGGTTCCGGTGCGCTGCCCAGGCCGGCGGCGTGAGTAAGGCCGTGCCACTCGCGCTCGACGCGCCGCCGGTCCGTCTTCTTGTAGAGCTTGATGCAGATTGGCGTGGGGGCCGCAGCCCAGGCGAAGACGTCGTTGTTGCGACCACCGTCGAGTGCCTGCAGCCCGTGTTCGTCGAGCGTGGCGGCCAGTGCGTCGGCTCCGGCCGCACGCGCGGCGCGCAGGGCGCTGAGCAGGTCGGTGGGAGCAGTGGGCTCGCGGTGGCTGGCCAACGTGGTCATCGTTTCGGACTCCCGGTTTCGGCTCGGCAGGGATGCACGGGACTCGCCCGTCTGCCTGATCTGCTGCAGGGTGGCGTGAATAGCGAGGTGAGTGTCGACCGGGTCGAGTTCGGCAAGCAGTCCAGCTTGACAATCCAACGCACATCCCGCTTCAGTTAGCCACCACAAACGACGTTCCGCTCCGTATCAACGCAGGTCAGAAGT # Right flank : GGACGGGCAAGAGGGGTGGACGTGATCTTTCTGCTGCCACTGCCGGAGCTGATTCCCGGTGCTTCGGCGCAGGCCGGCGAACCGGCGCCATGACAGCGGCGCCACCCGCTGCCGAGAGAACCGGGCCCGGCTCGCTGGACGCCGCCGTACTGCGGATCTTCACGCCTTCTGGCCACCCGGTCGGCTTGGGCTTCCTGGTCACCGACACGCTCGCGCTGACCTGCGCGCACGTGGTGTCCAGTGCTCTCGGGATCGACGACGACACGCAGCCGCCCGCCGGGGCCACCGTCGTGGTGGACCTGCCGCTTCTCGGCCCGGGGCGGGCCGAGGTCGAGGCCGTGGCGAGCATCGCGCACTGGGTTCCCGGACTGCCCTCGGGCGCGGGGGATGTGGCCGTCCTGCGGCTCGACGCGCCGTTGCGCGACGCCCGGCCGGTCCGGCTGGTCGAGGCGGAGGAGCTGTGGGGACACCCGGCGCGGGCTTACGGCCTGCCGGACGGG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.20, 5:-1.5, 6:0.25, 7:-0.57, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //