Array 1 968199-967445 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MKNW01000014.1 Listeria monocytogenes strain NRRL B-33380 PROKKA_contig000014, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                          	Insertion/Deletion
==========	======	======	======	=============================	=========================================	==================
    968198	    29	 100.0	    37	.............................	ATCATCGCTCCAAGATGTAGCATAGTCTTCGCTATCA    	
    968132	    29	 100.0	    37	.............................	ACTCTACAATTTTACAGGCAAAGAACGCGAACAAACC    	
    968066	    29	 100.0	    36	.............................	CTTTATCATATGACGAATTTAATAAATCATGTCCTT     	
    968001	    29	 100.0	    36	.............................	CGAGATAAAGTATTAGTGGCCATTAATGATAGTTCG     	
    967936	    29	 100.0	    36	.............................	TTGTTCCCACAAAACGAAGGTAATATGGAAAGCGTC     	
    967871	    29	  96.6	    41	................G............	ATTCATTTCTATATATTTTTTGGACTATAGTTTTAGTTTTA	
    967801	    29	  96.6	    37	................G............	AGCGGTGTAGACAAAATAACTACAATTAAATTTTCCG    	
    967735	    29	  96.6	    37	................G............	AGAACAGGTGCTGGGTCAACTTGCCCTCCCATTTTTT    	
    967669	    29	  96.6	    35	................G............	TAAACAAGTGCTTCTGGCAATACCAACGTTCCATC      	
    967605	    29	  93.1	    37	A...............A............	TTGGTTCCTTTGGAAAACAACAATAGCGTGTAGTATT    	
    967539	    29	  75.9	    36	......T.C.A.C...CA...T.......	GCAGAAACAGCAAAATAACCAAAAGTAATGACTTTC     	G [967515]
    967473	    29	  79.3	     0	......A..T....AGA......A.....	|                                        	
==========	======	======	======	=============================	=========================================	==================
        12	    29	  94.6	    37	GTTTTAGTTACTTATTTTGAAATGTAAAT	                                         	       

# Left flank :   GGCGTCCGTGCCACCACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCTGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGCTGTAAATGGTTGGGGGAAGGGGAATTTGGCGGTATTTGCTTGGGGAAATCTTCAGGATAAGGGGAGGTTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG
# Right flank :  GAAAACCTGTTATACATATGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCCAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCATTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGAGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATTT

# Questionable array : NO	 Score: 5.68
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTTACTTATTTTGAAATGTAAAT
# Alternate repeat :   GTTTTAGTTACTTATTGTGAAATGTAAAT

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:82.76%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGTTACTTATTTTGAAATGTAAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [16-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [76.7-58.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,4.91   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
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