Array 1 452640-453380 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXMD010000001.1 Listeria monocytogenes strain 2011L-2626 L2626-1.seq, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 452640 29 100.0 36 ............................. TCTTTAGTTGTTACTTGTTGGTTAATGAGATCTACC 452705 29 100.0 36 ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 452770 29 100.0 35 ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 452834 29 100.0 37 ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC 452900 29 100.0 35 ............................. CGCTCTGACCTGTTCCTTGTGCAACACTCGTTACA 452964 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 453027 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 453091 29 96.6 36 A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 453156 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 453220 29 96.6 37 ................A............ TTGGTTCCTTTGGAAAACAACAATAACGTGTAGTATT 453286 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [453309] 453352 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 12 29 95.7 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : TGAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 2613419-2611665 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXMD010000001.1 Listeria monocytogenes strain 2011L-2626 L2626-1.seq, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================= ================== 2613418 36 100.0 30 .................................... TCGTGATTTCTTCCTCATGCGCGCTTTTGA 2613352 36 100.0 30 .................................... TTATCAGCAATTGAAACTATTAAAAATGAC 2613286 35 97.2 65 .................-.................. CCTAGACCTAGATGCTACTAGAGTGGACGAGTTTTAGAGCTATGTTANNNNNCACACACTTAATT 2613186 36 63.9 30 AA..A..T.TGTGNNNNN.................. AGATATGGGCGAACTACCCGACGACAACAA 2613120 36 100.0 30 .................................... GAAGAAGTCACTAGTTGGGTCAAGCAAGGC 2613054 36 100.0 30 .................................... TAGTGCCAGTAAATTCAGTTCCTCCAAAGG 2612988 36 100.0 30 .................................... TGTAAATGCGTTTAAATCGATGGGAAGCGC 2612922 36 100.0 30 .................................... ACACGTGTGGAAGAAGAGGGCTCTGACGCT 2612856 36 100.0 30 .................................... GTATGAAACGGTTAAATGGATCTCTATAGC 2612790 36 100.0 30 .................................... ACCAAGTCTAAGTGTAGACTGGCGTGCGCA 2612724 36 100.0 30 .................................... TTTAATGATTTTCTTTTGCGCGCCGTTGGT 2612658 36 100.0 30 .................................... GAATTTTTTTGTAAGATCGACAACTTTTTC 2612592 36 100.0 30 .................................... TTGATAATGATAAGGCTGTACGGATTATTC 2612526 36 100.0 30 .................................... TAACAGTGTATTTCTATTGCTCGGTGTGTT 2612460 36 100.0 30 .................................... TGGAGATAACGAAGAGTAAAGCGAGGCAGC 2612394 36 100.0 30 .................................... GCGTTGAACCAGAAGGTGGGAAAGAAACAC 2612328 36 100.0 62 .................................... TGGTAATTTAGTATCTATTACGGCTGGGAAGTTTTAGAGCTATGTTANNNNNCACACACTTA 2612230 36 69.4 30 A.....AGTG.G..NNNNN................. TTAAATTTCCCTTCTAACACTATCTATCAA AA [2612226] 2612162 36 100.0 30 .................................... TAGTTATTTGCTTAGAAATGTCATCCATCA 2612096 36 100.0 30 .................................... CTAGAAGCTTTGACATTAATATTACGCTTA 2612030 36 100.0 30 .................................... AAATAATTTTTTTGATCATGTTGCAACAGC 2611964 36 100.0 30 .................................... TGCAATATTGTCTGGATCTTTTTTCTTGTT 2611898 36 100.0 30 .................................... AGTTAGATAGATAAACAAACTAAACAAAGG 2611832 36 100.0 30 .................................... TAGTTTTTCTTCGTCCTCTAAACGCAAGCT 2611766 36 100.0 30 .................................... TGTCTGAATGTAGTTGATATCTTTAACTTG 2611700 36 72.2 0 .........A..CA.....C.....A.C.A..C.TA | ========== ====== ====== ====== ==================================== ================================================================= ================== 26 36 96.3 33 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GAGACAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAAACTATCTACATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAAGGACGGAGAAAAGTTTCCTCATCTCTATATATACTAGAGTGGCTTAGACTTCTTAAATCCGAATTTTGAAATGAATGTTGACCAAGATAAAGATATAAATAAATTGTTTCCCTATTCAATTCGTTTCAACTCAACTTGCAAATTTCAAGTTGCTACAAGCAAAGGGGATATACCGTTGAAAGTGGAGGAGCAAAATAATTGTTACGAGACCAAAAGTTTAAAAATTTTATATGATTATATTCTAAATGCGAGTAAAAATGGTGACACGCTTGAACTATATACTGTTTGGACAGCGAGAAAGATTTACCGTTAACGCACAAACCAGAACTGCTTTAACTATCGGAAATCTAGTTTTAAGTGACAGAGAGCTATTAATAATTAAAAGTGAGACAC # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [23-27] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //