Array 1 76100-78155 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHNU010000056.1 Tyzzerella nexilis isolate Clostridium_nexile_TS_8243C_mod2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 76100 33 97.0 34 ..T.............................. CTCACCGTGAGGAACGCTTCTCATATCCGAAAAC 76167 33 97.0 33 ..T.............................. ATCATCATAGTTGTAATTGTTCATACTCACACC 76233 33 97.0 34 ..T.............................. TTGCCCTAATTTCAAAAAGCATTTTCGGGGCATT 76300 33 97.0 34 ..T.............................. TTGCTCAATGCAACCGCCTGTTGATTGATAACCG 76367 33 97.0 34 ..T.............................. TTCAAAGTAGGTGTAGATTTTTTCCGAAACATAG 76434 33 97.0 34 ..T.............................. TTTCGCAATCAATCCTGCTAACTTGTTGTTATCC 76501 33 97.0 36 ..T.............................. ATAGGAAGTAGCATAAGGTAAAGCAGAATCAATCGC 76570 33 97.0 35 ..T.............................. TCTTGCGTCCGTTGCTCCGTTGAACTCGATTGCAA 76638 33 97.0 33 ..T.............................. TTATATCCTTTTACAGCATTTTGCTTGTTGCTA 76704 33 97.0 38 ..T.............................. TACCCAGTTGCTCTGCTATCCAGCTTTTTTTATACCCT 76775 33 97.0 34 ..T.............................. CTCACAAAATCCAGTGCATTTCCACTAGCACCAC 76842 33 97.0 34 ..T.............................. AATCAATGTCGATTTCTTTCTGTCTTTACATTTT 76909 33 97.0 35 ..T.............................. GTTGAAGAAAAGCTCTTAAAAGGAGAATCTTTAAA 76977 33 100.0 34 ................................. TATGACACAAAAGACGAAGCAATCGCAAAGCTGG 77044 33 100.0 33 ................................. CATCAAGTCAATAGGAACTAAGTCGCCAACGTT 77110 33 100.0 33 ................................. CGAAATCCAAGATGCAGAAAGAGTAGGAACGCT 77176 33 100.0 35 ................................. AAAATTGGAGAACAGAGATACTGGATTCATCATAC 77244 33 100.0 33 ................................. CATCTTTTTCCAGTTGTGCTAGATCTGCACTCG 77310 33 100.0 35 ................................. CGTTAGTCATGTGTATATATAGTAAAGGGGCTAGA 77378 33 100.0 34 ................................. ATCTCTCCGTTAAACAGAGAAGCGAGTGTGATCC 77445 33 100.0 35 ................................. TCTGTTTTGTTTTTACTATTTTTATTTAATAGACA 77513 33 100.0 35 ................................. AAAATTGGAGAACAGAGATACTGGATTCATCATAC 77581 33 100.0 34 ................................. TGAAAAAATACGGAATTGTGCCAGAAAAGACGGG 77648 33 100.0 34 ................................. GGCATTACAAATCCTCTTGTCTTACCAGAACCAG 77715 33 100.0 36 ................................. TCCTTTACACAATTAACTCAACCATATAGCTTTCAA 77784 33 100.0 35 ................................. TACGGGTGTTAGCCGTAAGCTGAGACTATACCTTC 77852 33 100.0 33 ................................. TCTTTTATCTTTAACTCTACAGATGCAGATTTA 77918 33 100.0 36 ................................. CATATCTGCACGAGTCATTACACTCATTATTTTTAT 77987 33 100.0 36 ................................. TTTACTTTTACGCGACCTAAAAAATAATGAGTCAGA 78056 33 100.0 34 ................................. TTTAGTGTGAAAGCGGAAGGAAGTATTGATGAAG 78123 32 84.8 0 ....................A.-.TG..T.... | T [78142] ========== ====== ====== ====== ================================= ====================================== ================== 31 33 98.3 34 GTCGCTCCCTTCACGGGGAGCGTGGATTGAAAT # Left flank : CAAGAGATCTGAAGTATCTGTGTGAGAATGGGTATGAGCTGAAGAGAGTCAGGGCGGTGGATATGTTTGCGAATACCGTGCACGTCGAGACTTGTGTGTTGCTACAACGAAGAGCTATGTAGAAATCCTTAATTTTAGGCACTTTGCGAAGCATTTCGTGTTTTCACCAGAGGGGAAAAATAGTCGCGATAAACACCTCAAAAACTATTTTGATGTTTCGGTGGTTGTTGATATAGGGTGTGGGAACACAACAAATTAAATACTAATTTCAGGGATACTTGTTAAATATCCTACAGAATTTAATTGTCGAAAATATAGAGAGAATATTAAGTGCGAATGTCTAGTAAACATAGATTTTCTATGGGATTCGCACCAAAAAATAGTTCATATTTAGGTTGAATATGAAATTGATAGTGTGATAGACTTGTAATTATAGAGAAAAATTAGTAGAATTAGCAGAAAGTTGAACGATTGTAACAGAAAAATTAGTCAACATTGCT # Right flank : TATTTGAAGATATATAGAGACAGTCTGTCAGACGAAACGGAGATCAAAGACGTAGAAGAATTGTTAAAGTATTATATCAATAATAGAGAAGGTCTGATAGCGTATCAGTCACAAGGATTAAACTTACCGGAACATCCGGATGGATTGGAATACAGAAACATGGGAACTATGGAAAACCACATCTGGAGCGTGATTGCAAAACGAATGAAGCACAGTCATACCTGCTGGAGTAAACGGGAAAATCATCTGGCAAAGATTCTTGCAAAGAAATGCGGTGGAAAGTTATACGAAGTAACAGAAAAGTCAAAGCATGCCATATTCAAGGAAGAGACCGTGGAAGAAATTCTGATGGCAGAGGAAGTGGCTAAAAAAGTAGGAAAAGGATACGAATACCCTACCATAGGTCACATGGTAGGATTAGAGGGTAAAATAATAGGTGAACGCAAGAAACTGTTTGCAATGTCAGGATTTTAGTAAACAACTGTCAGAGAGAATGATAA # Questionable array : NO Score: 9.04 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.87, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACGGGGAGCGTGGATTGAAAT # Alternate repeat : GTTGCTCCCTTCACGGGGAGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.30,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 86718-88202 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHNU010000056.1 Tyzzerella nexilis isolate Clostridium_nexile_TS_8243C_mod2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 86718 32 100.0 33 ................................ TTGAATGTATCAGCCATTGAGTTACCAGACACA 86783 32 100.0 35 ................................ AACAAGTAAGAGGAAATAACGGCATAGGGTAGAGA 86850 32 100.0 34 ................................ ATCAGTTCGTCGAAGATTCCGTCGTTGACATATC 86916 32 100.0 36 ................................ TTCGTGTGCGGCATATCTGCCCGGTTGTAGAAAGAC 86984 32 100.0 34 ................................ TGCGTCAAACCTGTAATACACATACCGTACTTTC 87050 32 100.0 33 ................................ CGCTACAATCGCGCGGCCGTTTGTTAAGATACC 87115 32 100.0 34 ................................ CGCCGGGTGGCCGGTGCATTCCGAAAAGGAAGCC 87181 32 100.0 34 ................................ ATGAAAGGCTATATAAATGTCCAATGTATTAATT 87247 32 100.0 34 ................................ ATCTTCAATCTTGAAATACTTGCGGTCAAACTGC 87313 32 100.0 35 ................................ AATTAGACCGCCCTCTTACCAAATGGGACAGACTA 87380 32 100.0 33 ................................ ACCAATATTAGCAAGGATCGGGTGATAATAGTC 87445 32 100.0 34 ................................ TGCCTTATCATCCTCGACATATCTTAAAAAAGAT 87511 32 100.0 33 ................................ ACCTGCCTTAAGCTTACTTAAGATAACAGATAT 87576 32 100.0 35 ................................ TTTATAATGTATGTGCGAGGACGATTACTCGCCCT 87643 32 100.0 33 ................................ GTCGTATGGCAGTTACTGCAAATCGGTATCACA 87708 32 100.0 34 ................................ CAACACAGGTCATGTCGTTGAAAATTGATCGCAC 87774 32 100.0 34 ................................ ACAGAAGATCTAACGGCAAACTGTGGAAAAGGGA 87840 32 100.0 34 ................................ AGTAAAATCGGACGAAATTTCTCCAGCCTTAATC 87906 32 100.0 35 ................................ TAACATCTCTTTTGCATAATCAGACGGACTTTTCT 87973 32 100.0 34 ................................ GGGAAAATTTTGAAGGAATTGTTTACGATCTCTG 88039 32 100.0 33 ................................ TCTCATACGGAAAATCATCTCTTAAACATGCTG 88104 32 96.9 35 .............C.................. TGACCAAGCCAGTCCGCAATTTTCCTCTGATATTA 88171 32 96.9 0 ............T................... | ========== ====== ====== ====== ================================ ==================================== ================== 23 32 99.7 34 GTCGCTCCCCTCGTGGGAGCGTGGATTGAAAT # Left flank : CAGGAGAAAGATGAAACAGATGCAGGCATATCTTCAGGAAGTTTTAAAGAGACAATATAGTACAGAAGGATTTAAGGATATACTTAGAAAAATAAATACAGGATTATCTTGTGTGTTAAAGTGTGATAATGTGATTTTACTAGGTGGTTATAAAGGATTACTTCATTCGATATTATTGGATGCGAAGCAAGAAGAGTATTCTAACGGAATATACATAGACAATGAGAAAAATTTGCCACATGGGATTGTTTGCCTGACATATAAGAGATAATACGGAGGGTTCTGTAAGAATAGAAAAATGTAGTGAAAATATACACAGAAAATGTTGAGTGCGAATACCTGGTAAACAGAAATTTCCTGGGGGATTCGCACCGAAAAACATGTCGTATTTGGGTTAAATATGAAATTGATTGTGTGATAGTCTTGTAATGTTGGGAAAAAATTAGTATAATTAACAAAAGATTGACTGATTATAAAAGAAAAAATTAGTCAATGTTGCA # Right flank : TCACGAGAAACTTTGTGGGAATGAGTGGGGAGTGTGGTAACACAAACAATTAAATATTGAATTTGAGGGGGACTTGGAAAAAAGTATCCCTTTTCAACGTAAGGCGTTCAGAAATGAGCGTCTATTTTTTACCCAAAATGAAATGAGCATTAAATTTATGAAAAAGATATTGAAACGATTGTGTACGGGGGCTTTGCCTTTTGCGACTGTATTTACTGATTTGTCGGCTATACCCGTTTTTGTGGAACACAAGTAATACTGTACTGGACGAAGTCAGAAGAGCGTGTCGGTATCGTTGAAAAAGTGATGAATGACGGTTCAATTGGTTCTACCTTTAATGAGGGATACATAAGCCGAGGGTGAAACTGCCTGTTGTATTGACATGAATACCGCCTTTCAGAACGGCTGCAAGACCAAAGCCGACGCAAGCGCACGTAAGAGTGGCGCAAAGCAGCCGGCTAAAAATGTCAAGGTACTCTCTATTTTGCGTTCAAGAATAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCTCGTGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.10,-4.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 25757-23811 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHNU010000010.1 Tyzzerella nexilis isolate Clostridium_nexile_TS_8243C_mod2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 25756 32 100.0 34 ................................ CCCTCAACTCCATTGAAACTTCTCTAAAAAAATC 25690 32 100.0 34 ................................ ATCACAAAGCCTGTCAGAAACGCTTCTGATACGG 25624 32 100.0 34 ................................ CGAAACATAGCTTACCAGATAAGCGATAAAAGGA 25558 32 100.0 34 ................................ CCCGGCGCGCAACGTATAAGCCCGCGCCCGTGTA 25492 32 100.0 35 ................................ TTCGCAATTTCCTTATACTCACTTTCGGAAACACG 25425 32 100.0 33 ................................ CCTGCGCTACTGCTCCGTCTATGAATTCGCTGA 25360 32 100.0 33 ................................ TCCGCCGGAGTTGACACGGCAATGAAAACGGAA 25295 32 100.0 34 ................................ AGAAATACGGTACAAGAATACTCACAATACCGCA 25229 32 100.0 34 ................................ ATTGAAATAGTTGACAAACAGTAAAACATATGTT 25163 32 100.0 35 ................................ TATATTCTTATTGTATCACATTGTACATAGTTTGT 25096 32 100.0 34 ................................ TATACATTATCAATCACCCTGCCTTTTCCGTTTG 25030 32 100.0 34 ................................ GTGCGTGGGATTTGAACGGGAAGAAGTGGAATCA 24964 32 100.0 35 ................................ GCGCTCTACAATTCGCATGTTTTTTGTTTTTACCG 24897 32 100.0 33 ................................ TTCTTCAGCGCTGCAACTTCGTCCACAACAGAA 24832 32 100.0 34 ................................ TTTGGTCAATACCCATTCTCCCTCGTCCAAAAAC 24766 32 100.0 34 ................................ AACTCCAGCTTGCAAAATTTTCGGCAAGTTTTTC 24700 32 100.0 33 ................................ TAAAATGATTGTGATGTGACAAACTACAAATAA 24635 32 100.0 37 ................................ TCTAACTTCGCCAGTCTCTAAATCAACAGACTGTCGA 24566 32 100.0 32 ................................ GCAGATATCTTGTTATCAATATAGTTTTTTGT 24502 32 100.0 35 ................................ ACCTTTGCCGAGGCAGATTAGATGATTTATACCGC 24435 32 100.0 34 ................................ TGTCCAGACCTGGGACAGAATGCACAGGCATAAC 24369 32 100.0 34 ................................ TGCAATGTCCTTTTGCAATACCGTTTTCTACTTC 24303 32 100.0 34 ................................ TCTGTCAAACCCTATTTCGTTTTTGTGCATCTCA 24237 32 100.0 33 ................................ ATAATCTCTTGTAAATCACTTTGTGATATGTTT 24172 32 100.0 33 ................................ TGTAATCTGTGCATCAACTTCGATACCAAGTTC 24107 32 100.0 35 ................................ CTTTATGTTTCTGACGATACCGAGGACTGGGAAGA 24040 32 100.0 34 ................................ ATCGCAAAGTAGACGTCCAGCTTTGCGATTGCTT 23974 32 100.0 35 ................................ ATTTTTGACTGCACGATCTTCTACGGATTCCTGTA 23907 32 100.0 33 ................................ CAGGCGGGACTTTCGGATAATTGGATCCATTAA 23842 31 90.6 0 ........................-.G.T... | T [23813] ========== ====== ====== ====== ================================ ===================================== ================== 30 32 99.7 34 GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT # Left flank : ATCCGGTATTTCTCTGGAAATGAGGCGAAAATGGGATGTTAGTGTTGATTACATATGATGTGAACACAGAAACAGCGGCTGGAAAGAGGAGATTGCGCCAAGTGGCAAAACAGTGTGTAAATTATGGGAGAAGAGTGCAAAATTCTGTATTCGAATGTATCTTAGATAATGCACAGTGTGTTATGCTTAAGGCAAAACTGACAGATATCATCGATGAAGAAGTTGATAGTTTGAGATTTTATTACTTGGGAAATCAATATAAAACAAAAGTCGAACATGTTGGTGTAGACAGAGGAATTTCGGCGGATGGAATTCTTATTATGTAACTGGGGTGCGGATGATAAGCAAACATAAAAATGCTGGGAGATTCGCACCAAAAAAATGCACAAAAATTAGTTGAAGAGGTGAAAGTTAGAGAAATATGATGAGGAAAAGAGAATGATATTGGTAGAATTGAGTAATATTAAAGAATATAAAGCCTAAAATTAGGCAAAATTGCT # Right flank : GTGGTGGACGGGCTGCCGGAAGATGCCGATGATTTCCGGTATCCGGGAGATGCGATCGAACCGGAAATACAATCGGAGTTGGAACGTGCATTAAGCGGGGAAACGGTATTGCCGGAGAAGATTCTGGATACAGACTGGGGAAATATTTTTATTGCTTATTATCCGTTGTATAATGAATCAGGAGAAGTCATCGGTGCACTTGGAATAGAAGTTGCGGCAGATATAGAAGCCGAGGCGGTACATGACAAATCCATTATACAGAGACATGGCAAATACTGATTTTATGACAGAACTAAAGAACAGAAATTCTTATGAGACAGACCGGCAGAACCTGGATGCAAAGAAGAAATGGAATGGCCTGACAGTGGCAGTGATCGATGTGAACAATCTGAAGCTGGTAAATGATCGGCTGGGGCATGCTGTGGGTGATGATTGTATTGTGAATGCAGCACGGGTCCTGCAGAGTGTTGAATCTCAAAAAGTTACGGCGTATCGATACG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //