Array 1 2747983-2747357 **** Predicted by CRISPRDetect 2.4 *** >NC_015416.1 Methanothrix soehngenii GP6, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 2747982 37 100.0 37 ..................................... TAGAAATTCGGGTTTCGAGTGGCTGGTTTCATCGGGA 2747908 37 100.0 37 ..................................... GATACACGTCGAGTCCCATCTACGCAACCTCCTTGAT 2747834 37 100.0 38 ..................................... TGCCACCGCCTTTGATTTTGCCCGCAATCGACCCCAGC 2747759 37 100.0 37 ..................................... TCCATCGTTTAGCAAACTCCATCGCGATTTCCTCAGA 2747685 37 100.0 33 ..................................... TGCTCAAAGATGCTGTTCGGTTTGCCCAACTGG 2747615 37 100.0 36 ..................................... TGCATTCTTCCCGGTGGCTCTGCTTGTGGGGCTTCT 2747542 37 100.0 35 ..................................... GAAATGCGTACAGCCCGTGGCATTACAAAGTGAAC 2747470 37 100.0 40 ..................................... GTGGCAACTTCCTTTGCCATTTGTTCAAAGACGTTTCCAT 2747393 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 9 37 100.0 37 CATCAAGAGCAAGTTCCACGAAAACAAGGATTGAAAC # Left flank : ATGCGGGATCACAAAGCGCGGTTCCAAGTATATCCGAGTTGTACTTGTCGAGGCTGCCCAGACAATAGCTAATATGAAAAATACAGGGCTGTCCAGATTCTACAAGAGGCTGAGCAAAAAGAAGGAGCACAATGTGGCAATCGTTGCCGTAGCCAGGAAACTCATCTGTCTGATTTATCATCTTCTGATCAACCAGGAGTTCTATCAAGAGGTTGATTGCAGAAAGAGGAAAAAAGGTCGAAATGAGTCCTGCCATGAACCTTCTTTGAAGGATGAGCATCTGACGGATAAGGTAGCTGCAATTGTAGATGCCTTTTATGGAATGAGCGATAGTAGCCGGAAGAAGGCTCTCTTGCGAGCGCTTGAAGATATTTCTGTGAACAAGCCCGACCAGAAAAGGTCATCTGATGGAGGTGGATAGCTAGCCTCTTGCATTTGATTTTTTTTGGTTTTCCATGGGAAACACCGCCGCATCCCATGTCTCGGGATCGATGCCCGTC # Right flank : GCCCATGAGCCCAGGCAGGGGCTCACACGTGACGGATGGAAAACCAGATATTTTAATCCGTCCATGTTAAGTCTGATATGGGCAGTGAAGGCTGACAAGTTTATGGGACGCTTGATCCCGCGATTGAAACCAGCCAATATCCCTCGAATACGGGACTGCGTCATAGAACGCGTATGGGAAATTATCCCATATAAGGGAATGATCATCTGCCCATATCAGGCAGAGACATATATGAAAAAACGAAGAGAAAGAGTTTGCGGTGCAGATGTCCATAAAGATCTGATCGTTGCCACAATAACTGGCGACGAAGTGCCGTCGATTCGAGAGAATTTTGGGACAACAAAATCCGAGCTTGATAGATTCAGAAACTGGCTTGCAGACAACAAATGCGAACAGGTTGCATTTGAAGCTACAGGAGTCTATTGGATCCCGATTTATGATGTTCTGAGCCGAACCATAGATACCATTGTTGCCAATCCGCTGCAGATAAAGTCCATTCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CATCAAGAGCAAGTTCCACGAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 2 2750461-2749613 **** Predicted by CRISPRDetect 2.4 *** >NC_015416.1 Methanothrix soehngenii GP6, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 2750460 37 100.0 37 ..................................... GCCATCATGCAACTTCCTTCTGACATTTTGTTGAAAA 2750386 37 100.0 39 ..................................... TCAAGGACACCATCGCTCTGTCCGCTGCCCTGATCTCAA 2750310 37 100.0 38 ..................................... TCTGCAGTTGACGCGGTGGTCATAATTAGAAGGTGACA 2750235 37 100.0 34 ..................................... ACCGCATAGAAAAACGTCCCAGACTCCTCTAGGA 2750164 37 100.0 36 ..................................... GAAATTCGTCCACCCCAGTCGATTCCATGACATTCA 2750091 37 100.0 36 ..................................... TGCATTCTTCCCGGTGGCTCTGCTTGTGGGGCTTCT 2750018 37 100.0 35 ..................................... GAAATGCGTACAGCCCGTGGCATTACAAAGTGAAC 2749946 37 100.0 40 ..................................... GTGGCAACTTCCTTTGCCATTTGTTCAAAGACGTTTCCAT 2749869 37 100.0 36 ..................................... TAAGGGCCAAGCTCTACAGCATCGTATTTGTTGCCT 2749796 37 100.0 37 ..................................... TCCCACGCCGTGGTTGCTTCTTCGATGTTCCCCGATC 2749722 37 100.0 36 ..................................... ACGGTCAGAGCATCATCCCCCGAGACATAGATGGGA 2749649 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 12 37 100.0 37 CATCAAGAGCAAGTTCCACGAAAACAAGGATTGAAAC # Left flank : GCACAGAGGAGATCTTAAGCTACAGTTTTGCGATGCCATGGCTGGCCCTGAGCCAGGAGAACTATGCCAAGTATGTAGCCGCATCTGAGGAGGAGAGAAGGGATTTGTTGAGAAGGATTCTGGTGGGCAACATCCTCTCCGCCTCCAAAGGCCTAGGGTATGTGGCGAAAGAGCATATCAGGCTGGATCTGGGGAGGATGAAAGATGAGATCTGCATGCTCAAGGGCACAAAGGTTACAGGCTTTCGAGGGGAGTTCACCACCTGCTTTGCCATACCAGATCACATGGGACTGGGAAAGTCGGTCTCCAGAGGATTCGGCGCGGTTATGAGGCTAAAATAGATCGCTTAATCACTCTTTTTAAAGCTAGGGGCGCATTTTGAAGCTGCCAGGCCGGAACGAATTTATAAGGCATCTGATAAATTCCATTCATGCCAGCGGAGGGCTAAGAATGGGTGGTTTAACGGTGTCAAACGGGAAAAAGAACGAAAAAAAGCCGCT # Right flank : GCCCATGAGCCCAGGCAGGGGCTCACACGTGACGGATGGAAAACCAGATATTTTAATCCGTCCATGTTAAGTCTGATATGGGCAGTGAAGGCTGACAAGTTTATGGGACGCTTGATCCCGCGATTGAAACCAGCCAATATCCCTCGAATACGGGACTGCGTCATAGAACGCGTATGGGAAATTATCCCATATAAGGGAATGATCATCTGCCCATATCAGGCAGAGACATATATGAAAAAACGAAGAGAAAGAGTTTGCGGTGCAGATGTCCATAAAGATCTGATCGTTGCCACAATAACTGGCGACGAAGTGCCGTCGATTCGAGAGAATTTTGGGACAACAAAATCCGAGCTTGATAGATTCAGAAACTGGCTTGCAGACAACAAATGCGAACAGGTTGCATTTGAAGCTACAGGAGTCTATTGGATCCCGATTTATGATGTTCTGAGCCGAACCATAGATACCATTGTTGCCAATCCGCTGCAGATAAAGTCCATTCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CATCAAGAGCAAGTTCCACGAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 3 2852843-2851895 **** Predicted by CRISPRDetect 2.4 *** >NC_015416.1 Methanothrix soehngenii GP6, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 2852842 37 100.0 39 ..................................... TCTTGTAATTTCTGTATCTAATGTTGATAGTAGGTCTTC 2852766 37 100.0 40 ..................................... TGACGGCATTTGCCAGGACGCCAAGAACTATTGGTTCCCG 2852689 37 100.0 40 ..................................... TTGGAGCGTCCGCAAGGTATGAGATGTACCGAGGGAATAT 2852612 37 100.0 38 ..................................... ACGAGGATCTCCGAACGGCCCGCATAGAGATGCATGAT 2852537 37 100.0 40 ..................................... TCATTATTCTGAGATGATCAGATATACGATCTGCAGCCAC 2852460 37 100.0 41 ..................................... ACCGCCATCTTCTTGGCCATTGTCCGGGGTGCGGCCAGAGC 2852382 37 100.0 38 ..................................... CCGGGCGGGCATAATACTAATTCAGGATTGATGATATG 2852307 37 100.0 36 ..................................... ACCATCTTGGTTAGGGCATCCATGCCGTATGAGCCG 2852234 37 100.0 38 ..................................... CTTTTTGAAGCCCTGGCTGGCAGAATCGTTGATCAGCT 2852159 37 100.0 40 ..................................... GTGTGAGTGTGACCCAGGCCCCCGCCAGCATATTCTGTGT 2852082 37 100.0 38 ..................................... CCCGCTTGGATTTCTCCAATGGTGATACCTTCCGCTTC 2852007 37 100.0 39 ..................................... ATTCGGTGCCGTTCCACATCTCGATTGGGATATTTTCGA 2851931 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 13 37 100.0 39 ATTGCAGAGCCTATCCCGATGAAAAGGGAATTGAAAC # Left flank : ACTCACATCCAGCGCCAAGCAGGAGTGAGATATTGGCAACAGAAGGCCATCTGATTGAGCTTCCTGAATGATCATATGTCGTCCCTCAACATCGGCTTTCGTCTCTCCTCGCGGACCTTCTTCTGGGTCATGGCGAAGGCTTTTTTTAAAAGGTCAATTTCAGCATGAGCCTGGCCCAGAAGTCTCTCCAATTCTGCAATCTTCGCCTGATCTTTGTACTTGTTTCCGTTACCCATGAATGCTTTTTCGGGATTTTCAGCCAGCTCTGCCTTCCATCGGCAAGGAAGACTCGGATGGATGCCATATTCGCGGGCGATCTGAGCAAGTGGCTTGCCTGCCTCAAGTTCGGCTAATACTGATATCTTGAAGTCCCGGTCGTAACGCCGCCTGGTCTTCTTCATGCACTTCCCTCCATGAGTCGGCATTGCTTAACTTTTTGTCCACTCGGAGGGGTTCACTCCAAACGCAACGCTAGATCTGCTATGGATTTTTCCAAATAT # Right flank : CAAGCATTATGATCCAATAATAGGCGAAAGACAAACTGATTGCAGGGCTTGGTTTACATTTTCCCGATTGCTTTCTTCTTGCAAGACATCAGCTGAGTTGGGGACTATTCAGCATCTTGACATCTGTATGGATTCACATATGCAGTGTATCTGTTAGAGCTTTTCTCCATTTTATAGGGTATATATGTAAGGACAAATATTCTATGTTTGCCTCTTTCAATCTTCTTATTCGAAAATGTATTTATATGATCAAATAAGTCTTTTGAGTCTGTCTCCCCAATATCATCTAGCGGTTGAACTATCTCATATCCCTTAATATTTCCTTCTGGATCTGTTGATTTCACTGTGAAGCCAGGTGGCAAATCTGGAATCGTTCTACTATTCGTATATTGGAAAAAACTTCCACGTTTTCCAAAATAATTTATATGAGCTGCTAATTCTTTTATTTTTTCAATATTTATGTTAGGGTAATTGGTCAGAGATAAAGCTATATTAAGCAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAGAGCCTATCCCGATGAAAAGGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 4 2855494-2854178 **** Predicted by CRISPRDetect 2.4 *** >NC_015416.1 Methanothrix soehngenii GP6, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 2855493 37 100.0 36 ..................................... ACCATCTTGGTTAGGGCATCCATGCCGTATGAGCCG 2855420 37 100.0 38 ..................................... CTTTTTGAAGCCCTGGCTGGCAGAATCGTTGATCAGCT 2855345 37 100.0 38 ..................................... ACACATCCGGGGCATAAAGAGAAGCCCCCGGCGGTATG 2855270 37 100.0 37 ..................................... ATCACGATCGTCCATGCCCCAGGTCATACCTGTACCC 2855196 37 100.0 40 ..................................... GATTCCTTCAAACCAATGGAACGATCCTCGTCCAGACCAA 2855119 37 100.0 40 ..................................... TATGCCAGCCGATCAGTATCTAGAGGGAGCTGCTCGATAC 2855042 37 100.0 38 ..................................... GTGATGACAGCGATCCACGCACCGAACTGGATTCCTTT 2854967 37 100.0 39 ..................................... TATTTGGCAGGCTCGTAATACTTCTCAGCCACTTTATAC 2854891 37 100.0 39 ..................................... TGGGCGGTCGTTCTGTCGGTCACCTTGTCGCTATCGTGC 2854815 37 100.0 37 ..................................... AATGTTCTCAGAGATGTTTCGCGGGATGTCTTCGAAA 2854741 37 100.0 38 ..................................... CCAGCTAGCGGACTTGCTGGAATGCTCAAGCCGTTGGG 2854666 37 100.0 39 ..................................... GGAACACTTCCGGCCTGGGATCGACTAGTTATCCCGCCG 2854590 37 100.0 40 ..................................... AGGAAGAATGGCTTGGTAAGCCTCCAGGCCAGCTGCGGAA 2854513 37 100.0 39 ..................................... ATAATATAATTCATGTAATGGTAATTCATGATTTTGGAG 2854437 37 100.0 36 ..................................... GTAATCATCCTCAGTGCCGCCACCACCTACCCAGAT 2854364 37 100.0 38 ..................................... CGATGCCTGGTTAGCAAAATCCTGGAGTTCGTCTATAT 2854289 37 100.0 38 ..................................... GCGTTCGCACTTTGCCGGACCACCAAAGGCCGGATTCC 2854214 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 18 37 100.0 38 ATTGCAGAGCCTATCCCGATGAAAAGGGAATTGAAAC # Left flank : TGATACTCCCTCAAAATAAGATTCTGCTACAGCAACTCTTAATGAGTCTTCCACACGAGAAAATCTCTCGAATACTGCGGTTTCGAATGGGAATTCTCGGATTTGAGGTTTATCAAGCTCTATCTCGCCGTAGATGGTCTTTAGTTTTCGCGATCTCGTTCCGTTGCGGTGTGCTCGTCTCTTGCCAGTCCGTTCATAGGGACGGGCCTGGATTTGATTTTCAGCCTCAAGCTGCATTACCTCATTCAGAAAACCCGCGGTCAGCTTCTTCATGCCCTCTTTTCGATCGATAAGATAATCATCTGCTATGTCGGATATATTCATGGCTCTGTGTCCCTCCCAAAGTTTCGACGACTTGGGGATACAGGGCCAATTATAATATCTCATGAAGAAATAACTTGCTGTTATCTCGTGAAGAGCAAGTCAGTTCTTGTTACTGATATTTCTGCAAATTTTACAGCAAAAATGATACGCTACCCTAATTCAGGATTGATGATATG # Right flank : GTGGACTGCACCCCTGATAATGGACAAATAGTTAAGCAATGGTATTTAAGGCAACCTCCACTTCGAACTGAACCGGAGATCTGTAATTGAGAGCTGAATGCAGCCTCTTATGGTTGTACACATTTTCAATAAAGTTGCATATGTTCCTGAATGCATCTTCAAATGTCTCATATTCATTGAGATATACCTCCTCGACCTTCAGTGTTTTTATAAAACTCTCAGCAAAAGCATTGTCATAAGGATTTCCTTTTCTCGACATGCTGATCTGGATGTCATGCGCCTTAAGACAGTCTACATAATCCTTGGACGCATACTGAACGCCTTGATCAGAATGATGAATAAGACCCTCAAGGGATTCCTTGGAACGGTTCTTCAATGCCTTTGCCAGAGCACTCATGGCCAGATCGCTTCTTATGCTCCTGCTCAGCTCCCACCCGATGCACTTTCTGCTGTAGAGATCCAGGATAACCGCGAGAAAGATATGCTCGTGCTGCAGCTGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAGAGCCTATCCCGATGAAAAGGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 5 2860349-2856874 **** Predicted by CRISPRDetect 2.4 *** >NC_015416.1 Methanothrix soehngenii GP6, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 2860348 37 100.0 41 ..................................... ACGGTCACCGTGATGCTCTGTCCGAGCACACGAGCAGTAAT 2860270 37 100.0 41 ..................................... TCCTCCATAGCTGTATCCGGGTCAATATCAATGGCAGTAGG 2860192 37 100.0 38 ..................................... AATCAGTCTCCGGATCTATCCTGGAATCGTAGACTCCG 2860117 37 100.0 36 ..................................... GCGGCACACGAAGCATTTCCTGCGAAAGATATCGCA 2860044 37 100.0 37 ..................................... GCGATAACCGGGCCTAAGAATGATGCCAGAGCACTAA 2859970 37 100.0 38 ..................................... GATGGACTTGGCGGAGGAACCCGCTAGAGCCCCGCAGA 2859895 37 100.0 38 ..................................... TTTTAACGAAAGTTTTAGACAACACAATGGCCTCATTT 2859820 37 100.0 34 ..................................... AGACGAGAGAGGAAGCTATCCGAGAAGGCATTGA 2859749 37 100.0 38 ..................................... GCCTGTGGTTCCCAATGCCCAATTCGTTTTGACGTTGC 2859674 37 100.0 36 ..................................... CCGGAGACTTCCCACGCCAGCCTTATCCTCCTCTTG 2859601 37 100.0 39 ..................................... TTATTTGTTTGGCCAAGGAGTGTCCAAACTCAGTGTCGC 2859525 37 100.0 38 ..................................... GAAATGGTAGCAAGAAATATTCTACCACGAAGAGAAGT 2859450 37 100.0 36 ..................................... TAAATGTGTGTTACGTCTTCGATGGATTCCACATCA 2859377 37 100.0 37 ..................................... AATACTGGTCACATAGCACTACAATCTATTTAAAATA 2859303 37 100.0 35 ..................................... GGTGTTCCGGCTTGATGAACATCACAACCAGAAAG 2859231 37 100.0 38 ..................................... TGATCCATTTGTATTAGAACCTGGTGACGCTACGTCAT 2859156 37 100.0 40 ..................................... TAATTGACCACAAAATCATTGTGGTTGTACCAGTTAGTGT 2859079 37 100.0 38 ..................................... TGGTAGTTGGTGGGTTTGGTAGATAGAACCACCCTATC 2859004 37 100.0 40 ..................................... TAGATCCAAGATATACTTCTCGTACATGTTCCGAGTGTGG 2858927 37 100.0 35 ..................................... ATGTTCCCGAGGCAACATACACGGCCACAACTATT 2858855 37 100.0 40 ..................................... GGGTAGATGTGGGTAGTGGATATAACGGGGAACAAGATGG 2858778 37 100.0 38 ..................................... TGGTTCTAATTCCATGAGGGGATAGGCTCTTGGCCAAA 2858703 37 100.0 38 ..................................... TGGAATCTATTTCAGCTTGGCAGGCTTCGGATGTTCCG 2858628 37 100.0 36 ..................................... AACGCCACCTTAAGAAGCTCTCTGGTCGGATGTCTC 2858555 37 100.0 38 ..................................... ACCAGAACCGGAGCAGGCCGCGCAGTACGACGTGACCA 2858480 37 100.0 41 ..................................... GTCACGCTGCATGAGCTGGCGATGACTCAGCACATCTCCAA 2858402 37 100.0 37 ..................................... CTGAATTAGCTGAAGGGATAAACATCCTGCAATTATA 2858328 37 100.0 39 ..................................... TGGATTCTCCAGCCACATATAGAGGCCCCCCGTATGAGT 2858252 37 100.0 36 ..................................... CATACCGGGTGACGATCGAACCACGCGGTTGATTTT 2858179 37 100.0 40 ..................................... CGATTTCCGAAGTAAATATGGGTTCCTGGCCGCGGTTCAA 2858102 37 100.0 36 ..................................... TCCATCAAGCTGTTCAGGTACTCATCCATTTCATCA 2858029 37 100.0 39 ..................................... ATGGGGACGGGCTTACATGGTGATGTACTATGACAAAAT 2857953 37 100.0 37 ..................................... TGAGTTCCTGGCTGGTGGTCAGATCGCGCAAACGAGG 2857879 37 100.0 39 ..................................... ACAAAAAGTGGTTCGGATACACATACACATACCGTTTCG 2857803 37 100.0 39 ..................................... TTTTCATAGAACCAACTAGTGGAAACACAGGTATTTCAT 2857727 37 100.0 31 ..................................... CAAGATGCGACTTCCTGGATCGCAGGGGCTT 2857659 37 100.0 40 ..................................... ATCTAAGTCCGGGCAGGTCTCGAGTCTGTTTTATTGTATC 2857582 37 100.0 35 ..................................... GAAGTCCTCTCTGCCTAAGCTCAATGACTCATCTA 2857510 37 100.0 40 ..................................... ATGTCCAGCTGTTGCTTGAGGTGAATCCTGTCTGAGCCGC 2857433 37 100.0 36 ..................................... GAGAATCTTGGCAATAGCCCCTCAAAGAGATCCTTC 2857360 37 100.0 38 ..................................... TGTTACCAGGCTCTACCATGCCTTTAACAAGACCTCTA 2857285 37 100.0 36 ..................................... AAGAGTTTATCATACTACGTTGTTAAATCGCTTTAC 2857212 37 100.0 36 ..................................... GAAATATGTGAAAAAACAACGTATTCTTGTTTTGGT 2857139 37 100.0 37 ..................................... AAAATAATATTGTTTTGTAAGATCCTTTTTTAGTTCG 2857065 37 100.0 40 ..................................... TCATTATTCTGAGATGATCAGATATACGATCTGCAGCCAC 2856988 37 100.0 41 ..................................... ACCGCCATCTTCTTGGCCATTGTCCGGGGTGCGGCCAGAGC 2856910 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 47 37 100.0 38 ATTGCAGAGCCTATCCCGATGAAAAGGGAATTGAAAC # Left flank : GATGACTCCTGGTATTTCAGAGCGGATATTTTTTATTTCGGACCAGATCCCAGTTGGTGGTGATTTGTAGGTCGATTGAAGAGGTATATATTTTATTATATTTTTTAAATAATAGTTGCATTATGGTTAAGACTGATCTAAACAGGCCGTCTTTTTAGTGGATGCCGCGAGTCGGCCCTCCGGGCCTCCCGCGGTAGTGCTCTAGCCCCCTCAACGCCGGGGAGGCTTGGATAAGTATGCCCTTGCCGTTGACGGACTAAATTATATATTAATATAAATATTCGCCATACTAAGCCTAAAGGTAATTCGCCTCAACGCCGGAAAGAACCCATGAGGGATGGATCTGTCCCCGAGGCTATGGGCCTTATAGATATCGATTGCTAATAGTCTTTCGCCAGAGTTTAAATACCTCCTTGCATTCGATAGGCTGGCGAAAAGACCCCCATTAAAAGGACCATTCAGGCGCAAGATTTAAGGCAAATCGGCCCTTTTAGGGGGCT # Right flank : CCGGGCGGGCATAATACTAATTCAGGTAGCGTGCCATATCTGCTGTAATTTCACAGTGGCCCTGTATCCTGATTCCACTCTACTCTTCCAATGATAAATACCTTTTACCTGTTATCCAATCCTCGTTAATGTCCATCATGATGCAAACCGCCACCCTCAGAAGCGACTGATCATTTGAATAGGCTCCAGCCACACGACTTCTTCGTTTCAGCTCCTTGTTGATTCTCTCCAGGACGTTAGTTGTTCGGATCCTTTTCCAGTGCGATCTGGGAAACGATTTATAGTTCCAAAGGTCAAATCGGAAGCTATCAATCGTATCCGCCGACTTTTTGAATCCTTTATCATCAAGAATGACAGCCAGCTCCTGCATCTTGAACTCATCTTCAATAGCATCCTTCAGCATGTAGGCGACCTCCTTTTTCTCTTTCTTAGGTATGTTCTTGAGCACAGCACGCATAAAGTGAACATTACACATTTGCCAAGATGCTCCAAGAAATGAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAGAGCCTATCCCGATGAAAAGGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA //