Array 1 16567-17195 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZGO01000020.1 Staphylococcus simulans strain SNUC 1332 contig020, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 16567 36 100.0 31 .................................... GGTGATCATGCTGAATATGTAAAACAATATA 16634 36 100.0 30 .................................... GTAACATGGTATCTATCATGTCCGGTATTT 16700 36 100.0 30 .................................... TTATGGCGTTTTGTGAAACAGTGCCGAATG 16766 36 100.0 30 .................................... AAACCTAATTCTTTTCTGTACTCATCAGCT 16832 36 100.0 29 .................................... ACATTATCGCAGTATGTTAGCTGACGAGC 16897 36 100.0 30 .................................... GCGTGGTAAGTGTCGACTATCGACCTAACG 16963 36 100.0 30 .................................... TTTTCTATTTGCCGCTGCCCTTTTCTTATC 17029 36 100.0 29 .................................... AGGCGTGTTTGAATACGACGATCCGAGAA 17094 36 100.0 30 .................................... AAGTTCTTGCATTATGTTCAGAACATCATA 17160 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 10 36 100.0 30 GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC # Left flank : ATTATCAAGCAAAAGAAAAGGCGTTTTTGATTTATCTGTATCCAGAAGCGGGTTTAAGTATAAAAGAGCAAATTAGATTTAGAAAAACATTAAATGATCTGCCAATTCCAATAATAGTATTAACAGAGTCCTCATATTTTTTATCAGAGAATATCAAAGGTTTGAACTACTTTATCAACAATATCCAAATGATTACTGAAGAGTTTATTGATGATAGTTACTGGAATGCGCCAATTAATATAGAAATAGAAAAGTTTAAAGAGAGATTTGAGTATTTGTTTAAAAAATATTGTTCTTTTCTAGAAGTTAATCCTACAATTTCTAATTATAATTTGACGGAAATTGTTGTTTTCGATGATTTGGATCTTTATATAGTCATAGCTTTTTTAAAACATTGCAAATTTAACTATCAACTAGACATTGATAGGGAGAAAATTTCTTCAGCATTATCAGTGTATCTATTTTCTTAACCATAATTCAAGTTTATAATTGTGCTAGAG # Right flank : CACTAACCCAAAAGGAACTTGAACTGCACCTGTTTTAGTACTCTGTAATTTTTAAGCAGCTTCGGCTGCTTTTTTCTATTTTCTGTCATTGACATACTTTAATGATAGGCATACAATAATTCTGAAAATTACGAAAACATCAGGTCTTTTGCATCACGAGAGGAGTCTTTTTATGGAACACACAGCGATGGATCATACTTCACCCACACATCCAGGGACTAAGATAGGTCCCAAATATTTTCTTTTTAACTTATTAAATGGGGTTGCGATTGGTATCGTAGCAGGTTTAATCCCGAATGCGATTTTAGGAGAAATTTTAAAAGCACTTGTCCCATTCAATCCAGTCTTTACACAATTACTACACATTACGACGGCTATTCAATTTGCGGTGCCTTGTTTAATCGGTGCGTTAGTTGCGTATCGTTTTAAATTTACACCTTTAGGTATCGCGGTAGTTTCAGCGGCTTCCTTTATCGGTAGTGGTGCTGTCGTCTTTAAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 16753-15737 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZGO01000029.1 Staphylococcus simulans strain SNUC 1332 contig029, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 16752 36 100.0 29 .................................... TGTTTAATAAATAATAAAACGACGATTAA 16687 36 100.0 30 .................................... GCAGCAAGACAAGCAATGACGAAACATCAG 16621 36 100.0 29 .................................... CAATTAAATTATAAAAAAGGGCAGAAAAA 16556 36 100.0 30 .................................... GTTGGAGGAAGTCGGAAAAATTGTTGGTGT 16490 36 100.0 30 .................................... CAAAGCAAGAATTAAAGGAGAAAAACATCA 16424 36 100.0 29 .................................... AAACGTTATCAACACATTCGTAGGGTTTT 16359 36 100.0 30 .................................... AAAAGAAAACGGCAATGCTGGCGTTGTGGG 16293 36 100.0 30 .................................... TGAGATGATTTGAGAACCATTTAAGCCTTT 16227 36 100.0 29 .................................... TTTAATAACTATCGTTTAATAACTATCGT 16162 36 100.0 29 .................................... CTTTACGTGCTTTTCTCCACGCACACATC 16097 36 100.0 29 .................................... ACCACAATTTCTAGTGTATATACGCCTTT 16032 36 100.0 29 .................................... ATTGTTCTGATCGCGTTAGACATTACTAG 15967 36 100.0 29 .................................... TGCATTAGCAATGTTTGGTGGTTCATTAA 15902 36 100.0 29 .................................... CGCAAAAAAACCATGCGTTGACGACCGCA 15837 36 100.0 29 .................................... TATCCAAATCATAGCTACATGCTCTTAAA 15772 36 88.9 0 ............................TT....CA | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 99.3 29 GTTTTAGAATTGTGATCTTTTAGAATGAAGTAAAAC # Left flank : TTGTTTAAAGAAAAAGAAAAAATAACTGATTTGGATAAGACAAGCAAAATGATAGCTTATCATGAATTTTGCCAACATCCATATCTTGATGATGAGTTCTTCATTCAATTTATGAACAAATATTAGTTTACTGTCATTATAAAGGTCTCTAAAACCTTGATTTCTCGTTGTTTAA # Right flank : AGCGGGTATAACTTAACTATTTATCGTGCTTGTTTGAATGGAAAAATCTTTATATTTGTTTTGGAAATGTCTTTGACTTTTCATCTATCTGTGTTAAACTTAGTACAGTTTAATAAAGAAATCGTAAGTCTTTAATTGAGAGTACAGAGATGCTCCGAAGGCAGATAATTTACATGTTGAAACTAGAGAAAGTAACTAAGTAAACACTTTATTAAGAGGTAATTTTGTATGAACACGCAATTCACCAACCCTGATTGCCATACAAATTTAGTAAAGTAACCGACAAAACAGTTACTGATTTAAATAGTTGAGATAGTAAATCTCGCATGTTCTTCGTGTCCCGTGTCTCTCAATTGAGATACGGGATTTTTTTATGGAAAGGTGAGTGCGGGAATGACAGAACGTATTGTATTAGATGATGCAGGCATGCAGCGGACTTTAACACGTATCGCACATGAAATTCTAGAGTATAACAAAGGTACTGAAAATCTTGTGTTGCT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAATTGTGATCTTTTAGAATGAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //