Array 1 366660-367115 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001975.1 Dickeya poaceiphila strain NCPPB 569 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 366660 29 100.0 32 ............................. GGGGAATCCGGCGAACGTTACACCATGCTGGA 366721 29 100.0 32 ............................. CAATAGTTTACTTTCACAGGCAAACAAAAGCA 366782 29 100.0 32 ............................. GACGTTTTCATAGACTTAACGATGTGGCGTGA 366843 29 100.0 32 ............................. AGATACGCACAAGGAAATCAAGGTGTATGTGC 366904 29 96.6 32 .............T............... CTATCGCAGCACGAAAAGAGGACCGCAGAAAG 366965 29 100.0 32 ............................. AATCTAACAACGCGTTTCGCGTTCGCCGTAAC 367026 29 96.6 32 ...........A................. TAGACGTAATCACCAACGTGGCTGGACTGCCA 367087 29 93.1 0 ...........................GC | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTGATTGAAGACGTGCTGGCTGCCGGCGAAATTGAGCCGCCACAGGCACCGCCAGATGCACAACCGCCGGCCATTCCCGAACCGACACCCTTTGGCGACGCCGGGCATCGGGGGCATGGCGGATGAGTATGCTGGTGGTGGTGACGGAAAACGTGCCGCCGCGCTTGCGCGGTCGGCTGGCGGTCTGGTTGCTGGAGGTGCGCGCCGGGGTGTACGTGGGCGACACCTCGCGCCGGGTACGGGAAATGATCTGGCAACAGGTGGTGGAACTGGCTGAACAAGGCAATGTGGTAATGGCCTGGGCCACTAACACTGAGTCCGGTTTTGAGTTCCAGACGGTCGGTGAAAATCGCCGGATGCCGGTGGATCTCGATGGACTGCGGTTAGTCTCTTTTCACCCTGTTGAAAATCAGTGAGTTAGTGTTCTTTAACAACCGGGAAAAATCGGTGGAATTTTCCTGCCTTTAAAATACCTTATAAAACAGGTATATATTTTTAGA # Right flank : CTTTATCAAAAAGGGACTGCTGAAGCGCCAGAGGCACCCTTTGGGGAAGGGTGCCTCTGGTTTGTTGTTGACGGCAAACGGCGTTAAAAACGCTGCTTAAAAGGAATGCCAGTCATCCTCGCTGCCTGCCGTTTTGCGTGATGACGCCGCCGGTTTTAAGGCCAGCGTTTTGGCTGGAGCAGGGGAGGCTGAAAGCATTGGTCTGCTGCTGGGTTGGTGATAAGCGTCAGCCCTTGTGCCGCCCAAATGGAAGATACTAACCACCTGTTTTAACTGCTCTGCCTGCTGCTGCAAGGCTTGTGTCGCGTTATTGCCTTCTCTCACCAGTGAGGCGTTTTGCAATGTGGTCTGTTCCATCTTATTGATGGCCATATTCACCTGTTCGATGCCAAGTGACTGCTCCTGGCTGGCGATGCTGATTTCACCTACCAGTTCGCTCACTTTGCGCACCCCATCCACAATCCCCTGAATGGATGCACCGGCTTTTTCCACCAGTCGGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 662739-663073 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001975.1 Dickeya poaceiphila strain NCPPB 569 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 662739 29 100.0 32 ............................. GTGGCGCGCCAGGTGGTGACGGTTGAGGTGAT 662800 29 100.0 32 ............................. AAGCCGGGGCTTCTGCCCCTAATTAACGGGGT 662861 29 100.0 32 ............................. CCACCGCATTGTTTGCTGCTCCGGATGCATCA 662922 29 100.0 32 ............................. GCTGGCCTGTATTCACCTTCTTGATCATGTGC 662983 29 100.0 32 ............................. GAGCTGAATCCGGTACAAAAATCGGCCATCGC 663044 29 89.7 0 ............T............GT.. | G [663071] ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAGCACGGCAAAAAGTCGGCAAGTGTTGAAGGCTGGTGTTGCACCAGCCTTTCTTTTTGCATTTTGCTCAACTGCTTGACGCGGTATTCCCATTTCAACGCGGTGGAACGATCACCCGCGACACAGTGATACACCAGCGTCAGCGGCCCTTTGCCGCGCAATGCACGAGCGCCTTTCCCGCTTTGGTGCTGCGCCAGTCGTCGCGCCACATCGGTAGTGATGCCGGTATAAAGCCACCCACTGCCGGTACGCAGCAGGTACAGGAACCATATTGCTCCGGTGTCGTTCACCGTTTTTTCCCTCTGTATGATCGAAGTACTTATTTTACGGGGTTATGTCGGTGAAGGCAGCACGTAGCGGCGATACGGGTTGGTGGGGAACGGTGGAAAAAATCGGGATCTTGATTTATCAATAAGTTAGCGCTCTTTAACAACCAGAAAAAGTCGGTGGAATTTTTTAGCCTTTAAAAATCATTATAAAACAAGTATATAATTTTAGA # Right flank : GGGTGTGATATACCGGTATAATCTGGGGCGGTTCCTTGGGTTGAATTGTGATAATATTCACACATGTCTTGATTTATGTGTATGTAATTTCTTTTTTGTGTGAATAAAACCACAAAACAGGCTGAGGTCTCCGGGTGAAATAGCGGTATATGCCAGAGAGACAGCCATGTGGCTAAATAACGGAGCATTGTATGACTGAGTTGACTGTGGCGGCGCAACGTGCGCTGGGGCTGATGGATTTAACCACCCTGAATGATGACGATACCGATGAAAAGGTGATCGCGCTATGCCGTCAGGCTAATAGCCCGGCGGGAAAAACCGCCGCCATTTGTATCTATCCGCGTTTTGTGCCGCTGGCGCGCAAGGTACTGCGCGAGCAGGGTACGCCGGATGTCCGCATTGCTACCGTGACCAATTTCCCGCACGGCAATGACGACATTGATATCGCGCTGGCGGAAACCAACGCAGCTATCGCCTATGGCGCCGACGAGGTGGACGTG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3487177-3487385 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001975.1 Dickeya poaceiphila strain NCPPB 569 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3487177 28 100.0 32 ............................ GTAGGCCATCAGGTCAGTTGGCTTCACGGTCG 3487237 28 100.0 33 ............................ CAACACCGGGGTGCGAATATACAGACATTGTTT 3487298 28 100.0 32 ............................ GCCATCGCGGATCTGACTTCTCTGTCTAAATC 3487358 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 36 GTGAACTGCCGCGTAGGCAGCTTAGAAA # Left flank : TGACGGAAATCCCGCCCATGGCGATATCGCACTGACCGGACTGAAAATCTGGCATCAGGGTTTTCCAGCTGGTTTTCACCCATTCCACCTTCACGCCCAGGCTTTTCGCCAGCGACTGTGCCATGGCGATATCGATGCCTTCGTAACTGCCATCCGCACGTAGCGAGGTATACGGCTTATAGTCCCCGGTGGTACAGACCTTCAGCACCCTGTGTTCCTGAACCTGATCAAGATGAGACGCCGCGCTGGCGCTACCGGCCAGCCCCAACAACAGAATCAGTGAAAACCGTTTTTTCATGAAAGTTCCTTGCAAAGCTGTCTGACAAACGGCGCCACTGTAACATGCCGTTTCAGCGAGTGTCGGTTTTGACCCTTTTTTTTCGACTACGTATAACTTGTTGATTTTTAATCATGATAATCGCAGGTATAAAAAAAGGGTTTCACAGCCCAAAACACAATTTTCCCTTTCAACATCAAGCCATAAGCGATAAATTGCTACA # Right flank : AAGACAAGCGGCGCATCAGATATCGTCACACACGCAGCAATTATCAGGCCAACCCCAACACCATTTACCAGCAGGGCGTGTTTAAGGTACTTAACAAACTGAATCAGCTAAAAAAAATCCTCAACCTCACGTTTATTGCAGCAATGCGATTATCACGTTGATTTAGTGTGTAAATAGTTCAAAATCTGCACACAACCGACATATTGACGGGTCGCTATGCACTACCATGAACCAGAACAGTGCTGCCGGGCAGCAGAAAAAACACGCTGACCCCATCAGGATGCCAAACAACAAACTTTCGGAAGCCAAAAAAGCTGCTAGTCTGTAGCTTTTGTATTTCTGGGAAAGCAGGGCTATGTACAACATTGATGATTTTGACTTGAAGATCCTCACACTGCTGCAGGCAAATGGACGCCTGACTAATCAGGAGCTCAGCGATCTGGTGGGGCTATCGGCCTCACAGTGTTCTCGTCGTCGCATTGCCCTCGAACAGGCACAAC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGCGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGAACTGCCGCATAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 3491235-3491087 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001975.1 Dickeya poaceiphila strain NCPPB 569 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3491234 28 100.0 32 ............................ AGTTGGCATCGAATTCAAAAGAGCGATTGATT 3491174 28 100.0 32 ............................ AGCAAAGCAGCGCTCACCGCATCGGACAAGAT 3491114 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGGCGCTGACGGCACTGGAACAAACCGGCTGGCGCACAGGGCTGCGCGACTATAGCACCATCACCAATGTATTACCGGTGCCAACTGGTGCGCAGTACCGCACCGTGCGGCGGGTGCAGGTGAAAAGCAACGCCGAGCGCCTGCGCCGCCGGGCGGTGAGCAAAGGCCGGATGACTGCGGACGAAGCCGCCACCCGCATTCCCTACGCGGTGGAAAAACGCACCTCGCTGCCGTATCTGCCGCTGCGTAGCCTTTCCAGCGGACAAACGTTTTTACTGTTTGTCGAGCACGGCCCGCTGCAGGACAAACCGGTCGCCGGTACCTTCTCCAGCTACGGCTTAAGCGCGACCGCCACCATCCCGTGGTTTTGACCCTTTTTTTGCGGCCAGTTGTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAGGGTTTTCCCGGAAAAACGGCGGTTTTTCTTTAACAATCAGGCAATAAGCAATTATTTGCTACA # Right flank : TCGCTGAGGCAAAATTGAAGGCGTCGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTGTCTATTGGGTGGGTTCACTGCCGCACAGGCAGCTTAGAAAAGCAAAGCAGCGCTCACCGCATCGGACAAGATGTTCACTGCCGCACAGGCAGCTTAGAAAAAAAATCAATCGTTTTGGCGCGTAGCTTCGCCGTTCACTGCCGCACAGGCAGCTTAGAAAATCATTAAAGCGGCTCTGTTCCGGCCCTTTGGGTTCACTGCCGTACAGGCAGAGGTTGACGGGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCATTCCGCGTAAGGAACGCGTAATGGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 3500321-3500588 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001975.1 Dickeya poaceiphila strain NCPPB 569 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3500321 28 100.0 32 ............................ GCCTCTCCACTCGTTGCACAGCCGATGCATCC 3500381 28 100.0 32 ............................ GACAGCAAAGATGATGACAGCCTGCTTTAACC 3500441 28 100.0 32 ............................ CAGCCGGAAATAACTGGATAACGCCGAGCGAG 3500501 28 100.0 32 ............................ TGTTCGCGGTAGTCAACCGGCGCAGCCAGATC 3500561 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : GCCAATTGCGAGTCAGAATACAAAGAGTTAGAGTCAACGGGCTACAGTTCACTGCCGAGTAGGCAGCTTAGAAAGAGAAGCGTGCCGGAAATCTTGCGACGCACTTGTTCACTGCCGAGTAGGCAGCTTAGAAAAGTATACCGTACGGTGCAAACCTCACGTTTTCGTTCACTGCCGAGTAGGCAGCTTAGAAAGGGTGAAGTTACCCCCGCTGACATAGTGCGATGTTCACTGCCGAGTAGGCAGCTTAGAAATTCCCCTGCTGCGCTTTAGCTTCAGGAAAGGTGTTCACTGCCGAGTAGGCAGCTTAGAAAAAACTGTCTCAAATCCGTGGGATAAGTTGAGTGTTCACTGCCGAGTAGGCAGCTTAGAAATGTCACTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACGGGCGAGCCTCGCAG # Right flank : AACAGTTCTGGCGATTAAGGGGATTAAATTAGATTTTCACTGCCGTACAAGCGGTGGTTGACGGGTTTTCTGGCGTTAAAACTGGTGCTGAGGTGGGCGACTTCGCCGGATGAGCGGCATGGATGCCGCGAAAGCCTGTGCCGCTCCGGGAGAGCGTCACAGGCGGTCCGAATAGCGAAGGCGAACGCCGAAGGCACCGCGTTAGCGGCGTAGTTTAGCCACCCAGCCAGAGGTCAAGGAGAGGTGGCGATTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACTCGGTTTATCCCGCACGAAACTCTTCACGCTTTCAGGCACGCCTTCGGTGTCGGCGTGATGCGGTTAATCACGCACGAAACCCTTCACCACACTACCCTATACACTACGCCCTTAATCCAACAGCGCTTTCCCCGCTTCAGGGATATTCTGTCAGAACGATGTCCAATCATCATGGCTGGAGGCAGTAGCGGCGGCACGTTTT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [8.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //