Array 1 2438590-2437340 **** Predicted by CRISPRDetect 2.4 *** >NZ_UNQI01000008.1 Escherichia coli isolate 12-05829, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2438589 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 2438528 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 2438467 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 2438406 29 100.0 33 ............................. GTTTGAAGGGCGTTTGGAGGAACCCGCGCGTGC 2438344 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 2438283 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 2438222 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 2438161 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 2438100 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 2438039 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 2437978 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 2437917 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 2437856 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 2437795 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 2437734 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 2437673 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 2437612 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 2437551 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 2437490 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 2437429 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 2437368 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 21 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2465114-2464292 **** Predicted by CRISPRDetect 2.4 *** >NZ_UNQI01000008.1 Escherichia coli isolate 12-05829, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2465113 29 100.0 32 ............................. CTGCTTTCGTTTTAGGCAAGCTGTCATCTGGG 2465052 29 100.0 32 ............................. CGGAGCGTGTCTTGTGCTGCGTTACGGTAAAA 2464991 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 2464930 29 100.0 32 ............................. TTAGCTGTTAGCCAAACATGTCGACCTGTTTG 2464869 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 2464808 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 2464747 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 2464686 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 2464625 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 2464564 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 2464503 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 2464442 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 2464381 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 2464320 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //