Array 1 242274-241469 **** Predicted by CRISPRDetect 2.4 *** >NZ_PXZB01000004.1 Salmonella enterica subsp. enterica serovar Typhimurium strain WG49 SATY004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 242273 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 242212 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 242151 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 242090 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 242029 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 241967 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 241864 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 241803 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 241742 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 241681 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 241620 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 241559 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 241498 29 96.6 0 A............................ | A [241471] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 260570-258406 **** Predicted by CRISPRDetect 2.4 *** >NZ_PXZB01000004.1 Salmonella enterica subsp. enterica serovar Typhimurium strain WG49 SATY004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 260569 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 260508 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 260447 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 260386 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 260325 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 260264 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 260203 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 260142 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 260081 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 260020 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 259959 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 259898 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 259837 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 259776 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 259715 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 259654 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 259593 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 259532 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 259471 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 259410 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 259349 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 259288 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 259227 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 259166 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 259105 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 259044 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 258983 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 258921 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 258860 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 258799 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 258738 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 258677 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 258616 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 258555 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 258494 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 258433 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 36 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //