Array 1 39714-38282 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIAU01000016.1 Escherichia coli strain 4-1BK entry16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 39713 29 100.0 32 ............................. CGCCCGCGCCAGTAGTTCGCGTGACCCGGCTC 39652 29 100.0 32 ............................. CCTCTGCCGCACTGGCTCCTGACAGCCTCAGC 39591 29 100.0 32 ............................. AATTTTGGCAGCGTGTAAAATCCACTTTTCAG 39530 29 100.0 32 ............................. ACGACGACGGCAGCGCAGCAAACTGGCACGGG 39469 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 39408 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 39347 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 39286 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 39225 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 39164 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 39103 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 39042 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 38981 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 38920 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 38859 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 38798 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 38737 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 38676 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 38615 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 38554 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 38493 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 38432 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 38371 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 38310 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCTTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 66479-65413 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIAU01000016.1 Escherichia coli strain 4-1BK entry16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 66478 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 66417 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 66356 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 66295 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 66234 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 66173 29 100.0 32 ............................. CGAATTTTGCACACTACGTCGCTGAGGGTAAA 66112 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 66051 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 65990 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 65929 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 65868 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 65807 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 65746 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 65685 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 65624 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 65563 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 65502 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 65441 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //