Array 1 5924-5296 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGFI010000015.1 Pectobacterium brasiliense strain IPO:3843 JGAR:11 IPO3843_015, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5923 28 96.4 32 .................T.......... CGGCGCTGAAAGCCTATAAAGGACGCCAGAGC 5863 28 96.4 32 .................T.......... TTGACTGGACGCAGCGAATTAAAGAAGACGGT 5803 28 96.4 32 .................T.......... CGCCGCGAAATGTCACCAACATAAACCATAAC 5743 28 100.0 32 ............................ AATGGAAAATTGCTGCGATGTCGGCCATCACC 5683 28 100.0 32 ............................ TGATTAGAAAACGTCTGTACCATCTGGAAAAA 5623 28 100.0 32 ............................ ATACAGAAAGGCTTCATTAGCCGGCCGCTGTT 5563 28 92.9 32 .......A...C................ AGCAGTTGTAGAGAGCTGGAGGGTGGTTGCAT 5503 28 96.4 32 ...........C................ TGCCACCGGACCAGATGAAGGGGACCGACAGT 5443 28 92.9 32 ........T..C................ CGTGGGGTGCCACTTTGTTTGATGCTCCAGAC 5383 28 92.9 32 ...............A....T....... AGGGCGCGTGGGTGCGACTGGAAGATAAAGAG 5323 28 78.6 0 ............GC........C..TGC | ========== ====== ====== ====== ============================ ================================ ================== 11 28 94.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GAGGCGCTCTCTACGTTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGAATGTAAAACCGTACCTGACGGCGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCAGAACGGCTACGTCGACGCTCGGTGAACAAAGGCTGGCTGACGGAGGCGGAGGCCGCAGCACGAATTCCTGATGCGGTGGAAAAACGTAGCGCACTGCCGTTTGTGCAAATTAAGAGCTTGTCCAACGGTCAGATGTTCTTCGTGTTTGTGGAACATGGCCCGCTACAGGATGCACCTATCGCCGGACGCTTTTCCTCCTACGGCCTAAGTGCAGAAGCCACCGTACCCTGGTTCTGACCCTTTTTTGGCGACCAACTGCAAGCTATTGATTTTTAATTGCGGTTGGTCGCTCTAATAAAAAAGGGTTTTCCGACAAAAAAGTCGCATTCTCTTTAACAATCTGGTGGTTAGCGTAAAAACTTAAC # Right flank : TTGTCGGGATGCGTCGCTGGTGCGACGCATTTTGGAGGCTTATTCCCCGTGGAGGGTGACAACCAGCGAGCGATTGCCGCCGTGATTGCGGTGCTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGAGCGTTAGACTGTTACCCAGCAGGCTACCTTTTAGGTGCGCGGGCATGTCGTCGCTACCTTCATATGTATGGCGGTAATACGGCTCATCCTCCGGCACTAAGCGATTAAAAAAACTCTCGAAATCCTGCCGCACCGTAGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAACACCTGCATCAGCCCGACGTTTATCTGGCGCAGTCCAGTAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATCGCAGTCCCCTGCTATCAGGCTTCACGTGCCAGAATCGGCC # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGTAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 14870-15919 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGFI010000015.1 Pectobacterium brasiliense strain IPO:3843 JGAR:11 IPO3843_015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 14870 28 100.0 32 ............................ CTTGCCTGACGGGTTGCGGCACGCACTCGAAA 14930 28 100.0 32 ............................ GTCTGCTGCAAACAGACTGGCAAACATACCCG 14990 28 100.0 32 ............................ AGTCATAATACCCATGCGGAGCAGAGGAATTT 15050 28 100.0 32 ............................ AGCGCTCGTTCCATCTCATCAATCGCCGGGTC 15110 28 100.0 32 ............................ ATGAGCATGACATACACCCGCAAATCGGCGAA 15170 28 100.0 32 ............................ TGAGAAATACTTCACTGAGGTTGAAGGTATGG 15230 28 100.0 32 ............................ ACGCATATAGTCTTTCTGCGTGAGTGGGAAAA 15290 28 100.0 32 ............................ GTGAAAAAGTCGGTTTTCGTCTGGCTGATACT 15350 28 100.0 32 ............................ TACCTGAGGATTGTCAGTCCGAAATCCGGTAT 15410 28 100.0 32 ............................ AGGAGCAGTGATACCAGTTATCAATGAAGGAT 15470 28 100.0 33 ............................ AGCCTGGCCAGCATTCAACTTGAAAAAACGGAT 15531 28 96.4 32 ...........C................ TGGAATAAATACGTCGCCGATGCCAACTTTAC 15591 28 96.4 32 ...........C................ ACGCCAGGCAACTAGCGCAACTTCCACCTGAT 15651 28 96.4 32 ...........C................ ATGTTGAGGGCGTGCAACGCGTTGATTTGGAA 15711 28 96.4 32 ...........C................ TCCTTTTCCTGATCCTTTCGTTCATCGCGTGA 15771 28 96.4 33 ...........C................ GATATGCCGATGATCCGATTTAAAACGATTAGT 15832 28 96.4 32 ...........C................ ACAGGCTCTTTCGCCGCCCTGTCATAAGCCGC 15892 28 82.1 0 .............C......T...TCC. | ========== ====== ====== ====== ============================ ================================= ================== 18 28 97.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TGCGTGACGGAGGTGCCGGTTCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTCACATATTCGACACGTCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAAGCGCAGGCTAATTATTTGATAAGAAAAATATAATCTTCAGAAAACTAACGAAAATCAGATTATCACAGTTGTATATGAAAAATTCTGACCGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCTATTTCACAGGCTTAATAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCGGGCTACT # Right flank : ACGCCTTAAGTGTCATTATCTGGCTATTATCGAGGTAGCACTATCGGCAGAGTTTGATACGTTATCGTCTTTAAATAACGTATTTTTGATTCCCCTTTCTCGTAACATTTTTAAGTAACGGGTTTCTTTGTGGGGAATGGAAAATTGCGGATTGGGCATTATTAACATTTAAAAACCATCATTTTTCCGTTAAAGTGCCTTTACAGGGAAATAGTGCGTTGACTTAAGTAAAATTCAAAGGAATGAGATGCTGTGAAATACGATCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGCTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTTTTACAGACGTTATGCACCCCAAATCCCAATCAATCGTGGAAAACGGCCATATTTGGCTGTACCGATCCTGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 22772-22263 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGFI010000015.1 Pectobacterium brasiliense strain IPO:3843 JGAR:11 IPO3843_015, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 22771 28 100.0 32 ............................ TGGTGCCGCCATGTTTTGAGCGGACCATACCG 22711 28 100.0 32 ............................ CGACACATCCGCCACACGCCCGTCGGCGCTGC 22651 28 100.0 32 ............................ ACACGCTGTGCGCGTTGATTGCGCAGCACTGG 22591 28 100.0 32 ............................ GTAATACTGGGATCGGATTTCGTAAACAAAAT 22531 28 100.0 32 ............................ CTACCGCGCCCTTGAAACGCTGCGTCGTATTC 22471 28 100.0 32 ............................ GTTCACCATATTTCCCTGCTAATGAAATCCGT 22411 28 96.4 32 ................A........... TGAACTAGTAATGGCGACAAAACAGATAGTCT 22351 28 96.4 33 ...........C................ ATCGATATTAATGTCTACATATTCGCGGAATGA 22290 28 89.3 0 .............C......T.A..... | ========== ====== ====== ====== ============================ ================================= ================== 9 28 98.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CTGACGTTCTGTCATAAAGTCGGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGCTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGCTCCTCCTCCTTAAAAAATACAGAAATTCAGCCAGCGACTTACCGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCACTCGGTTGTATATCCATAGCATATGCAGATACCTGACATAGGCCTATCGTCAATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCGTCGTAACTCATTGATTTTAAATTTAGACTATCAGCTCTGATAAAAAATGGTTCTTCGGGAAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACG # Right flank : ATAAAGCTCTCCTAAGGTCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGACTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGCCGCATCGCACTGGAACAGGCACAGCTGATTCTCGGCTATCATGCCCGTCTGTCGCCGAACGCCGTCGGGCTGGAATGTCTGGGGTTGATTGAGGTGCGACTGATCAATCACACCAGCGAATACGTTGAGCGTTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTACCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACGCTGATTAGCCAAATTCTGTCGCAGAACAAGAGCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //