Array 1 186561-184883 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXIN01000006.1 Salmonella enterica subsp. enterica serovar Derby strain BCW_2053 NODE_6_length_256540_cov_3.40087, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 186560 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 186499 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 186437 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 186376 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 186315 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 186254 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 186193 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 186132 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 186071 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 186010 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 185949 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 185888 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 185827 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 185766 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 185705 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 185644 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 185583 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 185522 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 185461 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 185400 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 185339 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 185278 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 185217 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 185156 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 185095 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 185034 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 184973 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 184912 29 93.1 0 A...........T................ | A [184885] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 204022-203201 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXIN01000006.1 Salmonella enterica subsp. enterica serovar Derby strain BCW_2053 NODE_6_length_256540_cov_3.40087, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 204021 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 203960 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 203899 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 203838 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 203777 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 203716 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 203655 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 203594 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 203533 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 203472 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 203411 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 203350 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 203289 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 203228 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //