Array 1 35509-37916 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMTR01000038.1 Streptomyces longisporoflavus strain JCM 4396 sequence038, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 35509 30 100.0 31 .............................. TCTCGCAGGCGACCGTGCGGCGGGTGTCCGC 35570 30 96.7 31 .............................T ACCTCGCCGAGCGCGACGAGGAGACCCAGGA 35631 30 96.7 31 .............................C ACCGTCACCTGCGGCGAATGCGGCGGCACCG 35692 30 96.7 31 .............................T GGGCCTGCAGGAGCACCGCACGGCGAAGAAG 35753 30 100.0 31 .............................. CGTCGGCCGCAGTAGTGCCTTCCTGGTATTC 35814 30 96.7 31 .............................A CGTGATGAGCAGCGAATACTTCTCCTTCGGC 35875 30 100.0 31 .............................. AACGAGGCGACTCGCGTACGTGCTGCGGCCG 35936 30 100.0 31 .............................. CGAACCAGGCCGAAGCCCTGATCGCAATGGG 35997 30 100.0 31 .............................. GATCGGGGAAGTCACTGTCTCCCTGCGCGCG 36058 30 96.7 31 .............................A TCGAGGGCACCAACGGGGTCGGCAAAACCCG 36119 30 96.7 31 .............................T CGGATCGGGCCTCCTCCCTTGCCTGACGCCG 36180 30 100.0 31 .............................. GGCCTCCCTCATGAATTCACCGAGAGGGAGG 36241 30 96.7 31 .............................A TCGCGTCCGTGAGCGGGGCGGCGGTCGTCGA 36302 30 100.0 31 .............................. CGAAGTCCCCCGCCTCCCTGGGGGTCAGGAA 36363 30 100.0 31 .............................. GTTCGCTCGGCATCCGGCCCAGGCGCGCCTG 36424 30 100.0 31 .............................. GACCCGGGAGTCGTCCGGCAGACCCTCGATG 36485 30 96.7 31 .............................C GGTCCCGGACGACATCGCCGCCCTGTGGGGC 36546 30 96.7 31 .............................T CGACTGCCGCCCGTGCTGCCGCCGCCGCGGA 36607 30 96.7 31 .............................T CGACCCATCACTTCCGGAAGCTCCTGGTGGC 36668 30 96.7 31 .............................A AGCAGAGGCTCGAACGTCTTCTTTTGAATGG 36729 30 96.7 31 .............................C CCTTGATCTCGCGCGCCAGACCATCGGGCCG 36790 30 96.7 32 .............................C CCGCGAGGCCGCCCAAGCCATGTTCAAGGGCT 36852 30 96.7 31 .............................A CCTCGACGCCGTCTTCAACTACGGCCCGCGC 36913 30 96.7 31 .............................A TGCTCAGCCTTCGCGCGGCCTTGACCACGCG 36974 30 100.0 31 .............................. CGAAGTGCAGCCGGACGAACGGCTCCTCCTC 37035 30 100.0 31 .............................. CCGGGCCCTCAACCAGCTCTGCGGCGCCCTG 37096 30 100.0 30 .............................. AGGAGTCCACAAGGGCAGTCTCATCCTCGT 37156 30 100.0 31 .............................. CGCCGGAGCGCGCAAGGCTCTGGAGGACTTC 37217 30 100.0 31 .............................. CATGGGGTTCAAGGAACCGGCGGTAAAGGCG 37278 30 96.7 31 .............................C GGCAGTCACGACGCAGCCCAGCCAAAGGGGC 37339 30 96.7 31 .............................C TCGGCGAGGGCCTGGCCGAGCCACTCCAGGC 37400 30 96.7 31 .............................C ACCAGTGGTCGCAATACGCCCTGGTGCAGCT 37461 30 93.3 31 ............................TC CCTACTGGGTGCCCCGCCCGCCCAAGGTCTG 37522 30 100.0 31 .............................. GCATCGCGAGCTCAAGACGCTGCGGCACGAT 37583 30 100.0 31 .............................. ACACCAACCGCAGTGCCTACGATTCACAGAG 37644 30 96.7 31 .............................C GGCACACCAAGACCCTGCTCACGCTGGCGGG 37705 30 100.0 31 .............................. CCACGCACTTCTCGGTGACCGGCATGAACGG 37766 30 96.7 31 ..........G................... CGTCCCTCACCTTGCCCCGGCCGAAGCCGCG 37827 30 93.3 30 ........G....................A GGCATGGGACGGAAGGCGAGGTCATGCGCG 37887 30 90.0 0 T.........A.................T. | ========== ====== ====== ====== ============================== ================================ ================== 40 30 97.8 31 CTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : CTGCTGGACATCCACCAGACACAGATTCACCCACTTGTTGGTGTAGACCTGTCGCTCGCCGTGGGTCTTCCAGTCCATACCTTCGGCCCCTCTCGATCGGTCTACAGGATCGCAGACTTGGAGGGGGGGAGGCCTGAGCAGGAACGACCCTTTTCGCGTCAGTCTGACGAGAGTTCTCCGCCAAGGGCATCCGATCAACAGCGTAACTGGGGTTGCTGAGCGGGCAGCCACGGGCGAGCCCGGTGGGCCTTGTGGTTGAAGTTCAGGAGGTGAACCCGCCGCGGAGGCGTAAAGGAGATGCCACGCTGCGCGCCTTCTTCGCCCCCAACGGCACCTCATGGGCTACACGGACCGTAGGTCTGGCATGGGTACTCGAGGGCGGGCGTTGTGTGCGTACGCTGTATCCGATGCCTCGTGCGAGTCGGGTGGTGGAAATGTCTGAATCTCTGAAAGTTGCTCAGAATGGCTTCTTCTCGCGGTAAACGCGCAGGTCAGCGAGA # Right flank : GCTATTACCGGAACCGAAGGAAGCGTGGTGATCACACACCGGTCAACTCGGCCGCGGCACGATAACTCCCTGTCAGGTAATGAGCCTGAAGGAAATCCACTATCCCCCTGCTGTTCTTCACTCGCGCCGCGCCGGTTACCCATAGCGAACTTCGCTAAGCGGGTGGGGAGTTCCTGCAACCAGCCGGACGTGGAGACTCCCAAGGTCGTCAGTGGAGCGCTTATCCGCCGCCTAACGGGGAGCTTGGCATGGCCGCTGTCAGATGCGGGGTGCCTCCGGAGTGCACGCAGCTCACCGATCTCTATGATCGGGCGCATTTGCTGCGGACGCATTGGTGGTTATGGCTACGCAAGGTGGCTCTGGAGTCACTGCGGCTCTCAACTGATTCGAGCGGGTACTTCGATCAGTTCGTTGCGCTTCGCCCAGTGCGAAGCCCGGCCTGCCGCTGTGTACGCGAAGCGCGGTACTGGCTGCCCTTTCGTTCGTCACCTGGACGCTGA # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.60, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 48582-48730 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMTR01000038.1 Streptomyces longisporoflavus strain JCM 4396 sequence038, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 48582 30 100.0 31 .............................. CCATCGGGGTGATGCGGTTGTCGGTGATCCA 48643 30 96.7 28 ...........C.................. GCTGGCTGTGGCACAACGGCGGCGGTGA 48701 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== =============================== ================== 3 30 97.8 30 CTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : GGGCAGGGCTTCGGCGATCAACTGCCGTACGTGCAGAGGCAGCCAGTGGTCCCAGAGCCGACCGGCGACCGCACCGCTGTCAGCCATGTGCCGCCACAACGGCAACCATGCGCCGCTCCCGCCACCTGCATGCTGATCGGACTTCGCCCACACCTTCCGGGCAGGCAGAGACAACCCCACGCCCAGCCGCGCCGGATCGGGCCGCCTATCGGTCATATGGAGGATTAGATCCCGTGATGGGGTGAAGTTATGGCCCGGTTGCGATGATGTGGCTAATAAGAGCCGTTACCCGTCAGTGCTCTGAGGTCGCTACGCCTCGTGACTGGCTGATTCCCACGGTCGGCGTTCGGGAGGCGCACTCCTGGCAGGGGTCCTCGGGGGCGGGCTCGGTGTGCGTACGCTGCATCTGACGTCTCATTCAAGCTGTCGGTGGAAATGTCCGAATCTTGAAAGTTGCTCAGAACGGCTCGTTCTCCGAATAACCGCCCAGGTAAGCGAGA # Right flank : CGGCGGCACCGCCGCTCGCCTGTTGATGAGTCTGCTCCTCGCGCGCGGGATGGCCTCAGCGCCCCGGTATCTAGTCGATGCGTGGGCCCGACTGCTCC # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-14.10,-14.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 237917-238095 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMTR01000005.1 Streptomyces longisporoflavus strain JCM 4396 sequence005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================================== ================== 237917 31 100.0 40 ............................... CTCAGCCACGAGGTACCCGCAGGGGTAGACGCAGCGGTCA 237988 31 96.8 46 .........................T..... AGCAACCACGACGCACCCGCAGAAGTCAGCGCGGGACCACGGCGTC 238065 31 96.8 0 ........A...................... | ========== ====== ====== ====== =============================== ============================================== ================== 3 31 97.9 44 GGGCCCCGCAGGGGGCGCGGGGAACGGCGCG # Left flank : TGCGCGAGACGGACTTCGGGGCCTGGGAGGGCCTCACCTTCGGTGAGGTGCGGGCGGGCCAGCCCGACGAGCTGAACGCGTGGCTCGCCTCGCCCGACGCGGCACCGCCGGGCGGCGAGTCCTTCGCGGAGGTGGCCCGCAGGGTGTCTGCGACGCGGGAACGCCTGGTCAGCGAGTACGCGGGCCGCACGGTCCTCCTGGTCACGCACGTCACGCCGATCAAAACGCTGGTGCGACTCGCGCTGGGCGCGCCGCCGGAGTCCCTGTTCCGTATGGAGCTCTCGGCTGCGTCGGTGTCGGCGGTGGCGTACTACGGGGACGGCAACGCGTCACTGCGCCTGCTAAACGACACGTCCCACCTGCGGTAGGGCTTCGCAGGGGGCCGACCGGGTGCCTGTCTGCGGGTGCTCTTCGGCCGAGCGCGCAGTTCCCCGCGCCCCTACGCACGCTGCAGCTCGGCCCGCTCCCGCAACACCCGCAGAAGACCGGACCGCGGTGTC # Right flank : GACCAGCCCCCACGCACCCGCAGAAGCCCCCGCTCAAGGCCCAGGGGCCAAGCCACTAGCGCAGACCCGCCGCCTCACGGGCCAGCGCCTCGACACGGCTCCAATCCTTCGCCGAGACCGCGTCAGCAGGAAGCATCCAACTACCGCCCACGCAACCCACGTTCTTCAGAGCGAGGTACGACGGAGCGGACGCGAGGCCGATACCGCCCGTAGGGCAGAAGCGGGCCTGGGGCAGCGGCCCACTCAGCGACTTGAGATAGGCGGTACCGCCCGCCGCCTCCGCGGGGAAGAACTTCATCTCCCGCACGCCCCGCTCAAGCAGCGCCACGACCTCGGACGTCGTCGAGACCCCCGGCAGGAACGGCACCCCGGACGCCTTCATCGCGGCGAGCAGCGTGTCCGTCCAGCCCGGGCTGACCAGGAAGCGTGCCCCGGCGTCCACGGACTCCTCGACGCCCCGGGGCGAGATGACGGTCCCCGCACCGACCACGGCGTCCGGC # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGCCCCGCAGGGGGCGCGGGGAACGGCGCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,0] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 4625-3593 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMTR01000065.1 Streptomyces longisporoflavus strain JCM 4396 sequence065, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================================== ================== 4624 30 96.7 31 .............................C AGGCGCCGGGCACGCTCGCGACGGTGTCGAC 4563 30 96.7 31 .............................C CCCGGATATCTGTGAGGCACGTTCCTGAACA 4502 30 96.7 31 .............................T CACCGCGTTCCAGGCGCTCGGCAAGATCAGG 4441 30 96.7 31 .............................C GACGCCGACAATGCAGCCCACGCCACCGCCC 4380 30 96.7 31 .............................A TGCGCACGATCGCGATCCCGTCCTGGGCGGC 4319 30 96.7 31 ............................G. GGGCAGGTTGTCGATCGGCCACCAGCGGGCG 4258 30 96.7 31 .............................A GCCTCGGCAATGTCCCAGATGGCCATGAAGG 4197 30 100.0 31 .............................. GACAGGCGGAGGCCGCGTAGACGAGGGCAAA 4136 30 96.7 31 .............................C GGGCTGCTTCGTGCCGGGCGTTGAACGCGGC 4075 30 100.0 31 .............................. CCTCGAGGACCGCCGTGTTCTGTCCGTCCTG 4014 30 96.7 31 .............................C GACGCACCCCGCTGAAGGGGGCGGGGGTCGG 3953 30 100.0 31 .............................. CGATCCCCATCGGCGTCCGGTCCTGCTCCTG 3892 30 100.0 31 .............................. ACACCGGGATAGGTCACCTCGTCATTTCCGA 3831 30 100.0 31 .............................. GGTTCTCCACCGAGATGAAGGACAACCTGCG 3770 30 83.3 59 .............AC......G...G...C GCCGCCTTCATGCGGGCCGGGCACGCTGGCCCTGCTCCCTGCTCCCTGCTCCCTGCTCC 3681 30 80.0 29 ........T....T........G..G.TT. GGGCAGGCGGCGCTGTTCTTGACCGTCGT 3622 30 66.7 0 .....G..T..AGA.....A..G..G..GC | ========== ====== ====== ====== ============================== =========================================================== ================== 17 30 94.1 33 CTGCTCCCCGCGCGTGCGGGGATGGACCCG # Left flank : GATGAGTCTGCTTCTCGCGCGCGGGATGGCCCCAGCGCCCCGGCATCCAGTCGATGCGTGGGCCCGACTGCTCCCCGCATGCGTGGGATGGGCTCGCGCCCTCGACCAGGCTCGGAGATCGCCCGGCTGTTCCCCTTCCTGCGGGGGTACGCCTGGGGGGAGGTTTCCGCGCCTTCCGCGCCGACGGTGAGTGCTCCGTTGCCTGGCCGCCCCGGGTCTGGATGCTTGTCGGTCGTACGGGTGATCTTGTGGTGGGTGGGGGGAGTGGCCGGGTTGTCTGGCCCTGGAGAGCCGTTGTGCGTCGGTGCTTTGGGGTCGCCGTCGTGTCTGGCTGGTTCTGCCGCTCGGCGTGCGGGTGTCGTGAGAGAAGTACATGCAGGTGGGGTTGGTGTGCGTAGGCTACGTCTGCTGTTTCGTCCAGCCGGGTGGTGGAATTGTCCGATTCTTTGAAAGTTGCTCAGAACGGTTCCTTCTGCTGGTAAACGGCGAGGTCAGCGAGA # Right flank : CGTGGCCCACGACGGTGTCGACGAACGGGGCTGCAGGGCGTAGCGGAGTGGGGAGTTGGGTGGTGGTGGTCATACGGTGCCGGGTGAGGGCGGCCTGCCGGTTGCCGGGGCAGGGTCTTGGCCGTGCTGGGGGTGAATGCGGCGGCGGTCGGGCTGCTCTGTGGCGCGTCCCGCGGCGGTCGGCGGGGTCATTGGTAGTCCCTTGTTTCGGTGAGGGTGGCGGCGCCGGGGGCGGCCGGGGTGCGATCGCTGAGGAAGCCGCGTACGCGTTGCAGCTGGCCTGCGGCGGTGGCGGTGAGCTGGTGGAGGGGGAGCGCTCGGGCGTTGCGGTCGGCGGCCTGTTCCAGCGCGGCGGTGTGGCTCCGGTGCGGGCGGTGCTGTTCGGCGAAGACCTCCTCCAGGTGGGGGCCGTGGATCAGCACGGGGCCCACCGGGCGTCCGTTGACGGTGAAGGAGCTGTAGTGGTCGTACTGGTCGAGGCCGGCGACCTGCGCGGGGCT # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-0.06, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 5483-5149 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMTR01000065.1 Streptomyces longisporoflavus strain JCM 4396 sequence065, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 5482 30 100.0 31 .............................. GGTTCTTCAGCCACGAACCCATGGCCTTGAT 5421 30 96.7 31 .............................A CGCCGCACCCGTACGACCCCGAGGTCGAGCC 5360 30 100.0 31 .............................. GGACATGCAGGGGCTCCCGTAACAAGGGCGT 5299 29 83.3 31 ...........T.AC..........-...G AAGGGAAGATCAGCATCGAACGTCACGCTGC 5239 30 100.0 31 .............................. CTTCGTAGAGAGGCGAATCCGTCGACTTGGG 5178 30 86.7 0 ........A....AC..............A | ========== ====== ====== ====== ============================== =============================== ================== 6 30 94.5 31 CTGCTCCCCGCGCGTGCGGGGATGGACCCT # Left flank : CTGTGGATGTATTTCACCTGGCCCAGCGCGTCTTCGGCTAGCTGTACGAGGCCTGGATTACGTGCGAGGAGCCGTACCCGAAACAGTTCTTGACGTGCGACGTAACGAAGTCGGTGATATTCGAGTCGCGCCGCAACGGCCTCGGGGCTCTCCGGAGACTCGTCCTGACGATGCCACCGATCGAGGGATCCACGCTGATAGGTGGCCAGTGCGGCGGCGAAGGTGCTGTAGGCGGCAATGCGTTCTTACAGGAACAAATGCTCCCGAGCGAACGACTCTCCGCGCTGACTGATACTCCGCTGAATGACATAGCTCAGCGCTACGCCCAGTAGCGTACCGATCACTGCGACGATGCTCGTGAGGATGCTGGCCACACCTACAGGGCAGCACGACTTCTCGCCGCTTGAGAAGAGAGAGCGCATCGGTCTTTGCGAGTAGCGATCTTGATAGACGCGTGGGGATGGAACCGTGGTGGGCCCGGCCGCGACGGACTACCGAGC # Right flank : CGGCGGCACCGCCGCCCGCCTGCTGATGAGTCTGCTTCTCGCGCGCGGGATGGCCCCAGCGCCCCGGCATCCAGTCGATGCGTGGGCCCGACTGCTCCCCGCATGCGTGGGATGGGCTCGCGCCCTCGACCAGGCTCGGAGATCGCCCGGCTGTTCCCCTTCCTGCGGGGGTACGCCTGGGGGGAGGTTTCCGCGCCTTCCGCGCCGACGGTGAGTGCTCCGTTGCCTGGCCGCCCCGGGTCTGGATGCTTGTCGGTCGTACGGGTGATCTTGTGGTGGGTGGGGGGAGTGGCCGGGTTGTCTGGCCCTGGAGAGCCGTTGTGCGTCGGTGCTTTGGGGTCGCCGTCGTGTCTGGCTGGTTCTGCCGCTCGGCGTGCGGGTGTCGTGAGAGAAGTACATGCAGGTGGGGTTGGTGTGCGTAGGCTACGTCTGCTGTTTCGTCCAGCCGGGTGGTGGAATTGTCCGATTCTTTGAAAGTTGCTCAGAACGGTTCCTTCTGC # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGACCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 6939-6420 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMTR01000065.1 Streptomyces longisporoflavus strain JCM 4396 sequence065, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 6938 30 93.3 31 .............AC............... GGTACGCGAAACCGAGGCTGCGCGCGATGAG T [6933] 6876 30 90.0 31 ..............C.........A....C GAAAGGCCCTCGTTGCGGAGCTCGGCAACTG 6815 29 83.3 31 ........-....ACA.............A CGACGGGCGCCGACAAGGTCGTCACCGTGAA 6755 30 96.7 31 ...........A.................. AGGCCCGCGGAGTCGATGACTGCTCCGCCAG 6694 30 100.0 31 .............................. GGCCCTGGGACGGCACCCACACCGACTGGGG 6633 30 96.7 31 .............................A GGCCCTGGGACGGCACCCACACCGACTGGGC 6572 30 90.0 31 .............AC..............C ACACGAGGGCTGACCACGTCTGCGCCGACGT 6511 30 80.0 32 ...T....T....AC...A..........C GAGCTCAGAACCACCCTGCGAGGCTGGGGACG 6449 30 83.3 0 T...................A....G.TG. | ========== ====== ====== ====== ============================== ================================ ================== 9 30 90.4 31 CTGCTCCCCGCGCGTGCGGGGATGGACCCG # Left flank : ATCAAGGAGCTACCGGCCGCCCACACCGCGCACCGACCCGGCGGATGCGCCAACCGGTTCCTCACCCACACCGGCTTCGCCGCCCGGCCGGACTTCGTCCATGCCGTGCGCGATCACCCCGCGCTTGTCGACGGAGACAACAACTGCCCCGCGAACGCCCGGAAGGATCCGCGGCATCGTCCGCAGTCTGGTGGGGGAGCGGTCAGCGCACAGCGGCTCCGCTTGCATTCGGACGAGGTCCGCTCGGCGGCCCGGCGTGTAGTTGTCCCTCTGCGACCGCCCTGTTGGGCGGTAAACGAATGGAGCTCTTCGGTCGGCGCCTTCCCGGCCATTGATCATCCGCTGCTCGTGCTCGGGACGACAACGATTTTGCGAAGACGGTTCAGTGACATTGCGGCGCCCTGACGTAGCGTCGTCACAACCGGTTGGTTGATTTGTCCGATTCTTTGAAAGTTACTCAGAACGGCTTTCGCTGCCGGTAAACGCACAGGTTAGTGAGA # Right flank : AGGTGCTGTCCGGCGAAGACGTCCTGGAGGTGGGGGCCGTGGATCAGCACGGGGCCGACGGTGCGTCCGTCGACGGTGAATGAGCTGTAGTGGCCGCCGACGCCAGTACGGGTTGGCCCGGCGGCTTCGACGCCGCAGCCGCCGGAGTAGTTACCGCTGACGACAGTGCACCACCGCTCCGCCCGCAGACCTGGTACGACCTGCCAGGTGATGCTGGGGATGCGGACGTTGTTCCGGTTTGAGTTCCACGCGGCGGAGCCGTGTGCGCACCCGCCCAACAGTCATGCCGGTTGCGGGACAACCTCCGGGCGTGCATGATCCGTTGTGTTGAGGTGCTGACCTATGGGGCGATTTGCTCCTCTGCGGCTTGCACGAAGTCCGTAATAGCCTGATGGACGGCATCACTTCGAGATTCACGTTCCCGCTCGTCAGCTGCTCTGTGGATGTATTTCACCTGGCCCAGCGCGTCTTCGGCTAGCTGTACGAGGCCTGGATTACGT # Questionable array : NO Score: 3.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.52, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGACCCG # Alternate repeat : CTGCTCCCCGCGCGTGCGGGGATGGACCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 12766-12254 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMTR01000065.1 Streptomyces longisporoflavus strain JCM 4396 sequence065, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 12765 30 96.7 31 .C............................ AGCTGGCCCGGGTACAGGGGCGCGTCGCCGA 12704 30 96.7 31 .............................T CCACTACGACCGCAACGCTGTCCATGCCGCG 12643 30 96.7 31 .............................C ACCCCCCGGAACCACCCCGGAACCACGGGGG 12582 30 100.0 31 .............................. ACTACCGGGCTGCGCTGGCGGACGCCAGGTT 12521 29 83.3 31 ........-....AC...A..........C ATGCACGGGAATCTGCACGGCGAGGACGTGA 12461 30 83.3 31 .............AC........AA....C GACCCTCGACGAGGTCCAGAAGCTCAGCCAG 12400 30 96.7 31 ......................G....... GCCACGGCCCCAAGCCGGCGCGCACCACCGG 12339 30 80.0 23 ............TC..T....G...G...T GGGCTGCCGACGTCATCCGTACC Deletion [12287] 12286 30 83.3 0 ....C...G............G...G...C | T,AG [12256,12262] ========== ====== ====== ====== ============================== =============================== ================== 9 30 90.7 30 CTGCTCCCCGCGCGTGCGGGGATGGACCCG # Left flank : GGTTGCAGAGGCCGGCGAAGGCCCTCGATCCGTACTGGGCCCCGTGGTCGGAGTGGAACACGGCACCGTCCAGGCCACCGCGCGTCGCAGCTGCCATCCGCAGTGCGTCGGCGACCAAACCGGTGCGCATGTGGTCGGCGATGGACCAGCCGACGACCTCGCTTCCTCCGGATCAATCAGATCCAGTATCAGCGTGTCCACCACTCAGGGGGAGGC # Right flank : GGCGACGGGCGTTGGCACGCATGTTCTGCCCGGGGTCCGAACTCTTCCTGGCTGCCTGCCCGGAGTGACAGGGCCCTTGGGTGCGGTGTACCGGCCGGGCCGGTCCTGTGACAGATCCGGCGTGTGTCGCTTCAGGCGAGGACACCGCTGCGTTCGGCCAGAGCGCGTAGCTCCATCGAGGTGGGCCCGGAGACCAGCAGGCTGGAGATCAGTGCTTTTGTTGCCGGACGGGCGTGGGTCTCCTGGGGGGCGCACTGTTCGGCGGCCAGCAGGGTGCGGACGCAGTCGCTGCGGCGGCCGAGACGGTCGTAGGTGACGGCGATGTCGCCGAGAGCGCGGGAGCGTCGTTCGACGCTGGGCAGTGCTTTCAGCGAGATCGTGCGGGCGGCCGCGAGCGCGGCCAGGGGGTCACCTGCGTGGTTTTCGGCGCTGATCCGGTGGAGTTGCACGGTGAGCGGGTTGAAGCCGCCGTGGTCGCGTAGCAGGGTGGCGCCGCCGAG # Questionable array : NO Score: 3.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2999-1854 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMTR01000075.1 Streptomyces longisporoflavus strain JCM 4396 sequence075, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================================================================================================================================= ================== 2998 29 73.3 169 ...T..........C.AC.A..A..-...T GTCGGGTCTGCAGTCCGGTCGTTTGTACGGTGTGTGGCTAGGGGTCTGTGGATGGGGCAGGTGTGCGTACGCTGCATTGGATCTCTCGTTCAACGGGGCGGAATTGTCCGTTTATTTGAAAGTTGCTCAGAAGGGCTTCTCCTGCCGGTAAACGGCCAGGTCAGCGAGA 2800 30 96.7 31 .............................C CGCAGGTCAGAGGCTTGCGGGAAGTGACCGA 2739 30 100.0 31 .............................. ACAGGCGGTCACCGGGCTGTGCGCCCGACCA 2678 30 96.7 31 .............................C TGACACACCGTCAAAACAGGGCCCCACCAGC 2617 30 100.0 31 .............................. ACTCGCAGATCACCGAACTCACGATCCGCAA 2556 30 100.0 31 .............................. CACGAACGGCCGGCCCAGGTCGAGGAGTTCG 2495 30 96.7 31 .............................A GGATCAGGGGCGTGGCGAGGTTGAGGAGAAG 2434 30 100.0 31 .............................. GGGCCTCTCGTTTTTGACTCCAATTGGAGTC 2373 30 96.7 31 .............................T CGATCAACTCCGCGCCGAACGCGACCGCTAC 2312 30 96.7 31 .............................A CCGTCTACCACAGCGACAAGGTCCCGGCGAC 2251 30 96.7 31 .............................C TTGACGATTCCGTAGCCCCCACCTGGGATTC 2190 30 96.7 31 .............................A TCGCGGCGGCCAGGGCGACCATCTCGCGGGG 2129 30 100.0 31 .............................. ACGATGAGCGCTTACCACCGCGCTACCAGAA 2068 30 96.7 31 .............................A GACCACGCAGTGAGCCTTCGGTGTAGCGGCT 2007 30 96.7 31 .............................C AGAGCCGGACGTTCATCTGGATCCTGCCGTT 1946 30 90.0 32 ............TAC............... TCGGCGTACCGGACTCCAGCTCGGCAACCCGA 1884 30 96.7 0 ........G..................... | T [1857] ========== ====== ====== ====== ============================== ========================================================================================================================================================================= ================== 17 30 95.9 40 CTGCTCCCCGCGCGTGCGGGGATGGACCCG # Left flank : ACGTCAGCGGGCAGGGCGAGGTCCGTCAGCAGCGCCACGCCGTCTGTCTTGTACGGCGCGGGCGGCAGGCCCACCTTCTCCGGGTGCACGCAGACGGGCACCCCCTGCAGGGTGTATCTGTGGCCGTCCCCGGGACTGAACGGGCACTCGCGAGACGGACGTTCGACTACGTCGAACTCACCGAGCGGAAAGCGGCGGGATGGGCAGATACCGCACGCACGGTGGCCGTCACCGGAGACGAAAGCCTCAACCATGCGCAGAGAGTAGCGCGTTGCACACGGCCCATTCAGCGCTCGGAAGCACGAGGGCGTCGGCGACGACAGCTCGTAGGCCGAGCCGAGCGCTCTTCGCGCTCTCGCAGCGGTGTAATCCTGCAAGACCCGCTCCGTGCGCCATGATGATCTGCCCGGCCACCGGCCGCAGGGCTCAGTCCCGCGAATTGTTCCCTGCGCACGCGGAGACGGCACTGGCCGATTCAGTCTTCAGGTGTGAGTCGCCTG # Right flank : AGACGAGAGCGTCTTGCCCCGTCATCGCCGTTTGCTGCCCGCGCGTGCAGCAATCTTCTCAACTCACTGCGCCGGCGATGCGGCAGGATGGCAATCGAGCATCGTAGAAACGGCTTCGGGCGTTTCTAGTGTCAAGTGGCCGCTACGGGGGGCATCGGATGGCATCTGGATGGTCGAGTTTGGACTGGGGCAATGTACCGACCTGGCTCAGTGCCGTGGTGACCAGCACATCCGTCTCCATCGCAGCCGTCTCCTATCGACGGAGCGTGCGTGACAAAGAGCGGTCCCAGGCCTGCCTCGTGGGGGCGTGGATCAGCATTGAGGACAAGGGCGGAAAGACCGAGCGCCTGATACGCATCAGCAATGCCAGTGACGCCCCGGTCTACGACATATCGGTCCGCGTACCAGGAATGAGATGGGAGCAGCACCTCTCGGAGCTGCCCCCCAAGACCACGACGACATTGGATGCGCGTCCGCCTTCACACCGGACGTCACGTGCC # Questionable array : NO Score: 4.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.80, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 8014-6278 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMTR01000075.1 Streptomyces longisporoflavus strain JCM 4396 sequence075, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 8013 30 100.0 31 .............................. AGAAGCACCCGGGCGGCAAGAAGTACATCAA 7952 30 96.7 31 .............................A AGCAGAGGCTCGAACGTCTTCTTTTGAATGG 7891 30 96.7 31 .............................C TCCACCGTGATGATCACGGGCCTCTTGCCGG 7830 30 100.0 31 .............................. GTCGTGATGGACCCTCGACCGTCCCTGACAA 7769 30 96.7 31 .............................C GATCTCGAAGACCAGGGGAGCGGCGCCGAAC 7708 30 96.7 31 .............................T CCCATGATCGGGCGGCCGAGTTCGCAGCTCC 7647 30 100.0 31 .............................. GTGTACGTCAAGGACCCCGAGACGCACCAGA 7586 30 96.7 31 .............................C GAAGCGATTCACCTGCACTTCAGCCTGTCCT 7525 30 96.7 31 .............................C CCACCAACCTCGAAGGAGCAGCATGACCGAG 7464 30 96.7 31 .............................C GTGACCGCATCAAGAACCCAGAGAGCCCCGA 7403 30 96.7 31 .............................T TCTGCGCACGACCGCCGGTGACGTTCTCGAA 7342 30 100.0 31 .............................. AGCAGTTGGAGTCCGGCGAGATCGGCGAGTG 7281 30 96.7 31 .............................T CACGAGGTCATCTCGCGTTCTGTCCTGGAGA 7220 30 96.7 31 .............................C CACGCGGCCCACCCACTTCCGCCTCTCCCAC 7159 30 96.7 31 .............................A ACCACGGGTCGTTCATCGCCCGCCGGGTGCC 7098 30 96.7 32 .............................A TCACCGGCGGCGGCATCAACGCCTTCCGGGAG 7036 30 96.7 31 .............................T CGCCGAGATCGCCCGCAAGGACAAGGAAGCA 6975 30 96.7 31 .............................C GAAGAAGCCCAAGGGACCCAAGGGCGGCTCC 6914 30 100.0 31 .............................. ACTTCAGCGGGCCAGACGCGTCCCCCTCAGA 6853 30 96.7 31 .............................T CGAAGCAAGGCAGACCGATGAAGCGCACCCC 6792 30 96.7 31 .............................C GCGGCAGCACCGGATGGGACGCCCGCGCCCG 6731 30 96.7 31 .............................T TGCTGTACATGTCGCCCATCAGGTCGTGGTC 6670 30 100.0 31 .............................. CGTGGAGGAAGCCGACGCCGACCCCGACCTG 6609 30 100.0 31 .............................. ACTCGAACCTTCAAGTCAGGGCACCACGTCG 6548 30 100.0 31 .............................. TCGACCCGTCGACGCGGGCGCAGCCGGTCGA 6487 30 90.0 31 .............AC..............A CCCCGCCCCGGAACTGCTCGCTGGCCACGAA 6426 30 93.3 31 .............AC............... GGCCGACCGGTAGTCCGCTCTTTTTGTGCCA 6365 30 86.7 28 .............AC.............TA CGGCCTTGAAGTTCGCCGCGTTCCGTTG 6307 30 83.3 0 .....T..T...T............G...C | ========== ====== ====== ====== ============================== ================================ ================== 29 30 96.5 31 CTGCTCCCCGCGCGTGCGGGGATGGACCCG # Left flank : TCCTCGCGCGCGGGATGGCCTCAGCGCCCCGGTATCTAGTCGATGCGTGGGCCCGACTGCTCCTAGCATGCGTGGGATGGACCCGTGCCCTCGGCCAGGCCTCGGAGATCGCCTGGCTGCTCCCGCCTCCTGCGGGGGTACGTCTGGGGGAGAAGTTTTCGCACCTTCCGCGCCGGCGGTGAGTGCTCTGTTGCCTGGCCGCCTCGGGTCTGGATGCTTGTCGGTCGTACGGGTGATCTTGTGGTGGATGGGGGAGTGGCCGGGTTGTCTGGCCCTGGAGAGCCGTTGTGCGTCGGTGCTTTGGGGCAGCCGTCGTGTCTGGCTGATTCTGCCGCTCCTCGGCGTGCGGTGTCGTTAGAGAAGTAGATGCAGGTGGGGTCGGTGTGCGTAGGCTACGTCTGATGTTTCGTCCAACCGGGTGGTGGAATTGTCCGATTCTTTGAAAGTTGCTCAGAACGGTTTCTCCTGCCGGTAAACGGCCAGGTCAGCGAG # Right flank : GACCACGTGGGTCGGTGCGCTATTCATGGGGCTTGGCAGAAGTCGATCAGTTGACCGATGAGGGGGGTGCGATTGTCCGCGCGCGGTCGTAGAGCTCGCGGGCTGCTGCGTTTTTCAGATGCGGCCGGATGAGGCCGAGCATGGCTTTCACACGGTCGTCGGCCCGCCCGGATTGGATCATGGGGTAGTCGTCGAGGGCCTGGTGCCAGGTGGCGCAGGCTGCTTCCAGGTGGCCGATCTCCAGCTGCCGTTCGGCGAGGGTGGCGCGGTGGCGTACTCGTGCGCGGCGGTAGACGCTGAAGCGGACCTTGTCCGACTGCTGCATGGCTTCGACGGCTCCGGGCACGTCGCCGAGTTCGTAACGCACCTGGCTGATGTGGTAGTTCAGCGACGAGGGGTCGTAGGAGCCGAAGGCCTTGCCCCGGGACTCCGCGCGGTCCATGGCGGCCTCTGCCTCCCGGATGTATCGCAGGGCGCTGGCGCGGTCGCCTGTCTGCGCG # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //