Array 1 65354-62197 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZHB01000002.1 Moraxella catarrhalis strain COPD_M76 NODE_2_length_349777_cov_34.729, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 65353 28 100.0 32 ............................ TATCAGTGTTGATACTTCACATTTAGCTACTA 65293 28 100.0 32 ............................ CCTGACAATGTCGGATTTATCAATGTGGTGGG 65233 28 100.0 32 ............................ TGTAAATCAAGCTCAATTTCATGATTGCCTAA 65173 28 100.0 32 ............................ AGTCAGCACCGCTTTGATGATTGATAAGATAG 65113 28 100.0 32 ............................ TAGATCTGAGCCATTAAATTTCATAATGAGCT 65053 28 100.0 32 ............................ TTACTGTATTCACTCTTGGGTGCATTAGTTAT 64993 28 100.0 32 ............................ GTTCAACACCAACCGAGAAGCCTACAATGAAC 64933 28 100.0 32 ............................ AGCTTGATTAAGTCCCATTTGTCATCGAGCAT 64873 28 100.0 32 ............................ ATCTAATGCAGACTGCGGCAAATTTGGCGTGC 64813 28 100.0 33 ............................ CTAGAATAAATGCACCTATTGCCATTCTCTTTA 64752 28 100.0 33 ............................ CTGTGCAAGTGCTGTGGTAAAATTTGCGTCGAC 64691 28 100.0 32 ............................ AAAAGGATCGGGCTATGATCTCTTAGGTGCTT 64631 28 100.0 32 ............................ TAAGCTATGCAGGCGGTCAAGCATATGACAGC 64571 28 100.0 32 ............................ TTCAGTAGTGATTTTACTGTCAATAGCTGCAA 64511 28 100.0 32 ............................ TGGTGATGTGCTATATGCTAAGTATGTTTGAT 64451 28 100.0 32 ............................ ATTTGCCATCAGAACCTTTGACGGCGTTCATA 64391 28 100.0 32 ............................ CAGCGGCTCTATGGAGCGATGTACACTAATAA 64331 28 100.0 35 ............................ CCAGTCGCTCAGTAGCGAGTTAAGTTTCAGTTTCA 64268 28 100.0 32 ............................ TCTTATCATTTTTATGATGCAGTGACACGCTT 64208 28 100.0 33 ............................ TAATCCCAAGACCTGAGCAAGTCTTAAAACTGC 64147 28 100.0 32 ............................ AATCTGTCCAGTCTGATGTATTGCCCAGTTTA 64087 28 100.0 32 ............................ TTGGTTTTCATGATACGCGTCACGAAGCAATT 64027 28 100.0 33 ............................ TACTATACCTGATTCTTATTCTGTGAATTATGT 63966 28 100.0 32 ............................ AACTTTTTCGTAATGCAAATTAAGCAGTTCTG 63906 28 100.0 32 ............................ ATACGCATCAAGCAAGTGACATCGCTGATCTG 63846 28 100.0 32 ............................ AATTATATTACAGTTGTGAACAGTCGAGAAAT 63786 28 100.0 32 ............................ TTGGTGCAACATTAGAGATGACCACTTTTGTC 63726 28 100.0 32 ............................ TAGAGGGTTCGTAGTCTTCCACTGAAATAGTC 63666 28 100.0 32 ............................ TGCTTGTTCACGCCCTGCCTGTGGACTAAAGT 63606 28 100.0 32 ............................ ATAAGGCTACCGCTCCACACCCATTCGGTCAT 63546 28 100.0 32 ............................ TGATAAATCTACACCACGATTTTGTAATTCAT 63486 28 100.0 32 ............................ AAACAAGTCGATAAGATTATTGAACCACTATT 63426 28 100.0 32 ............................ GACGATTACACGGCTTGAAGTATTTAGCCGAT 63366 28 100.0 32 ............................ AATCAAATATCTGCTGATGAGATAAAACAAAC 63306 28 96.4 32 ...........T................ CACCCAAAGACATTTCAATTCAGTTACTTAGA 63246 28 100.0 32 ............................ CTGCAAATCCTCTGGAGCTGCTGTCCAGTCTG 63186 28 100.0 32 ............................ AAAATAAATGGCTTCTGTAGCGTTAAATCGCT 63126 28 100.0 33 ............................ ACTTACTGAGCTTTCAACAGTATTAATCCGTCT 63065 28 100.0 32 ............................ AGAATACTATGACCAGATGAAGCTCATTATGA 63005 28 100.0 33 ............................ CTATTTACCCACCTTTCGTGAGAAGCCTATCGG 62944 28 100.0 32 ............................ ATCGGTCGGTCATGGCGGTAAGCTAATTTTGG 62884 28 100.0 32 ............................ TGTTGATACCTTACGCCTAGAATTCCCCAACG 62824 28 100.0 33 ............................ CATGTTCTCAGTGATAACACGCCCAACCACAAT 62763 28 100.0 32 ............................ TAATAGAACCATCGGTGAGCGGATTAATCAAC 62703 28 100.0 32 ............................ ACTTGATTTAGTAGCTAAGCTTGATGTGTCAA 62643 28 100.0 32 ............................ GCCTTGGTGTTGTCAGTTTTTGAGCAGAACGA 62583 28 100.0 31 ............................ AAAAACCGTTGTGGATAAAATCGCTCCTCTA 62524 28 100.0 32 ............................ TGATGAGTTTGAGTTATACGCCATAAAGCCTG 62464 28 100.0 32 ............................ GAAAACATGGGCTTTTTATCGCCGTGCGGACT 62404 28 100.0 32 ............................ ATAATTAACAGTTGCACAACCAATCTTAAAGA 62344 28 100.0 32 ............................ ATTGGGAATTATTAAGAGTTTGATCAACAGTA 62284 28 100.0 32 ............................ ATTGACTGAATTTACCGCAGTTTCAATCGTTG 62224 28 96.4 0 ..........A................. | ========== ====== ====== ====== ============================ =================================== ================== 53 28 99.9 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACTCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //