Array 1 98657-97286 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRNB01000001.1 Escherichia coli strain BX1S23 NODE_1_length_691054_cov_151.358, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 98656 29 100.0 32 ............................. GCTAAATGCAATAGGTATTGAGTGGGAAATTA 98595 29 100.0 32 ............................. AATTTGTTTTGGCTAATGTGCCCGGCCTTGAT 98534 29 100.0 32 ............................. TCGGGGCCGTACCTACAGCGCGGAAGGTGAAC 98473 29 100.0 32 ............................. CTTGCTGCGACTGCCTGGTACAGCATCTATGA 98412 29 100.0 32 ............................. CAGTTACGGGATGCCTGGCGTTATTCGCCCGG 98351 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 98290 29 96.6 32 ............................T ATTATGGTTGATCTGTCTGTACAGAATGAGGC 98229 29 100.0 32 ............................. CTGGAGCTGGAAAAACCGGAGGTGTTAGATCC 98168 29 100.0 32 ............................. CAATGTTTTATTTTCGAATAGCACTTTTTGCA 98107 29 100.0 32 ............................. TATCCAAATGATAAATAGTGACTCATAAAAAC 98046 29 100.0 32 ............................. GGATCAAATCTTTTGAGAGCAATTAAGGGGGA 97985 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGCCTGGGTGGAAAG 97924 29 100.0 32 ............................. TGGGGCTGAGCATGGCTAAACAACCGAGGCGC 97863 29 100.0 32 ............................. GTCAACTGGCACCACAGGATGATGGCGGCGAA 97802 29 96.6 32 ............C................ CAGGTCGACCGACTGGAGGCGGAGATTGTCGG 97741 29 96.6 32 ............C................ TGTTGTTTTTCTGCCGGATTAACGCGGTGCGA 97680 29 96.6 32 ............C................ TTTACGTGTTATCGCGCACCGGCGACGGTGTG 97619 29 96.6 32 ............C................ GTGATGAGGAAAAGCTAATAGAATGGCGACGC 97558 29 96.6 32 ............C................ GTCCACGGTTCGACGCCTACCGCCGCAGCTAT 97497 29 96.6 32 ............C................ GCCGTCGTGCCGTGTTCACCTTTACGAACCTG 97436 29 96.6 32 ............C................ TTGTCGGGCTTGTTCGGCGCGGGTTGTTAACT 97375 29 96.6 32 ............C................ CCAGCGAAGGACTTGCTCGTGTGGTTAAAGCC 97314 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 23 29 98.7 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCGATCTGGCTCCTGGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGGTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCTGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGACATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCTTTCACCAGCGGTAGCATTATCCGTATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGTTGTTGATTATCAAGCCTGACATCGTGCCAGCTTGTTCCCGCAGGGAAGGCGGCGGTTTTTGCACGTTGCTGATAGCCATCCTTATTCCCAAGATTCCAGTTAGTTGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCAAAAACTTCCGCGTCGTTACAGCACCCGGTACCCTTCGGATGATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125058-124358 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRNB01000001.1 Escherichia coli strain BX1S23 NODE_1_length_691054_cov_151.358, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125057 29 100.0 32 ............................. AGTGTTGCGGAGGTTGAGTTGAGCACCTATCC 124996 29 100.0 32 ............................. GTGATGCCGAACACGCCAAATATCTCGCAAGC 124935 29 100.0 32 ............................. CGAAAAAAGGCGCGCTCAAAAACGGTGCGATC 124874 29 100.0 32 ............................. GGAAAATAAACGCGTTATTCCTTGATGGGTGC 124813 29 100.0 32 ............................. AGCAACAGGTATTTCATATGGCCTGCCGTGCT 124752 29 100.0 32 ............................. GCCAGCGGCGCTGAGTACGACGACCTGATTAA 124691 29 100.0 32 ............................. TGGGCGCAGCTCATGTATTCCAATGAGGATAT 124630 29 100.0 32 ............................. GGATTCTGCACTCTTTGATGTAATGGTACTGC 124569 29 100.0 32 ............................. CCATTCTTGTTGTCGTTCATCAAGCGCAGGGG 124508 29 96.6 32 .....T....................... GACGATGAGACGCCCTGGTGTGCCGCGTTCGT 124447 29 100.0 32 ............................. CGTTTAGCTCCGCAATGTTGGATATCACTGAT 124386 29 89.7 0 ...........A........A.......A | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAATTGCTTGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTACACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTCTTTGTCGCCTCTAAAAAACCTCCATTTTGCCCATCCTGGACTAATCATTATCATTTTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTACGTCGGAGTTTGGTGGATTTTAGTCGGTATAGAATTACTTTAAATATTTGGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGTTTCTGTTAAGTTGGTAGATTGTGACTGACTTAAAAAATCAATAATTAATAATAGGTTATGTTTAGT # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGAAATTTTAACATATTATTTTTTTAATATTAATTAATACCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAATCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //