Array 1 3325725-3325391 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGMP010000001.1 Streptomyces sp. JV180 ctg.s1.000000F, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 3325724 30 96.7 31 ............T................. TCGGGTTGCGCAGCATCCGGGTAATGACAGC 3325663 30 93.3 31 ............T................C GGTGGATCACCATGAGGTTGGCGATGCCGAG 3325602 30 100.0 31 .............................. TCACCCGGGCGCGCCGGGCCCACATCCGGTA 3325541 30 100.0 31 .............................. CGCCGTTCTCCTCCTTGAGGGTTCCGGCGAT 3325480 30 80.0 30 .C.........TGG............T..A GCAGGGCAGGAAGTCCAGGACTGCGTCGCC 3325420 30 66.7 0 ............T.GC.T....CT..GAAT | ========== ====== ====== ====== ============================== =============================== ================== 6 30 89.5 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CGACAAGATCCCGCCCCGCCTCCCCGGGGCGGTGGAAGTCCGTTCGCCGGGCGCCAAGGAACCGATCTACGAAGCCCTCGTCGAGTGCACCAACTGCCGCCGCCCAGGCCCACCGGAAGCCCTTCCTGACGGCCTCTGCCGCCCCTGCCACCGCGCCCACACCACGGGCGGCAACGACACCGCCGCACCCACCCCGGACGAGGTCGCCGCCGTCAAAGCTCACATCGCCAACCTCCGCAACCTCCTCAAGCCCGTCTAGCTCCCCAACCGCCGCACCCCTCGTAGGGCAGATCGGGCGCACCGCACCCCGGGGCCCACGCCTGCGAAAGGTCTGACTGCAGCTCTTCCACCGAAGCCGGGCCGATGAGACCGGCGGCGGGCAGAATGGCATCAGCCGAACCACACGTGACCACTCTGCGGCAGGAGGCGAGATATGTCGGCTTCTCAAGAAGTAAGTAAAAACCGCCTTCCGAGCACCTAAACCCCCAGGTCACGAAGGG # Right flank : GCCGCTCCTCAGGTTCTTGCCGTGCTCACCGACATCCTTGCCGCCGTCGAGGACGGTGAGCGGGGGGCCTTGTGGAATCTGGCCGAAGGCGGGCGGGAGTTGGACGCCAATCTGGTGTGGCTGCCCGCCGGGGCCGAGGTCGGGGAGCATCAGGAGGACGTGCTCGACGTGTTCCTCGTCGTTCTGGAGGGCGGGGGCACGGTGAAGGCGGCGGGCGGCCGTGAGTTGGGGCTGGAGGCCGGGGCCGTGCTCTGGTTGCCGCGTACGTCCCGGCGCGCGCTGGCCGCCGGGCCGGACGGGCTCGGGTATCTCACCGTCCACCGCCGCCGCCCCGGCCTCGCGATCTCCGCGCCGAGTGCGGCGTACGAGGGTGGCGAGGGGCCCTGCATGCTGGACCGGGTCTGCCCCGAGTGCGGGCGGCTGTCGCAGGACCCCGCCCCGGTCTTCTGCAGCCGGTGCGGGGAGCGATTCACCGAGAGGTGAGCCCGGCGGTGAGCCGA # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.47, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3413621-3413835 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGMP010000001.1 Streptomyces sp. JV180 ctg.s1.000000F, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 3413621 30 90.0 31 ...........C...A.............T TATCCACAGGCCATCGCTTTTACGTTTCCCG A,C [3413630,3413638] 3413684 30 100.0 31 .............................. CCAGCTCGACCAGGATCAGCCGCTCGACCAG 3413745 30 93.3 31 ............................TC CCGGCTCGTCCAGCAGCTCGTGGTAGCAGGG 3413806 30 76.7 0 .....................TCAACAG.. | ========== ====== ====== ====== ============================== =============================== ================== 4 30 90.0 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : AGCGCCTCCAACCGGGAGGTTTACTACCCGAACTGGGCAACCGCCGAACCGGGCGAGCACGTGGCCGACGTCGCCATCCCCTTCCGCACCGGCTCGACACCCGACCTCTGAAAGTCAACCGACGACGGGCGACACACACCGCAGGTTGCAACCGCCGACCTGCGCAAGCACCTCGGGAGACCGCCATACCGGCCCCGAAGGAATAGCCGCGCCCCAAGCGCACACCATCAGCCTCCGCCACCCCCTCAAACCGTCGAACCCCAACCACGAAGCCCCTCCCGAAACGGGGGTAGACACACCGCACACCGACGCCCAAAGCCACGAAAGACAGAGCCGCACCTCTTCCATCGAAGCCGGGCCGATGAGACCGGATGGCGGGCAGAATGGCATCAGCCGAACCACACCTATGACCATTTTGCCCCGGAGAGCGAGATATGCCGGTTTCTCAACAAGTTAGTAAAAGCCGCCTCCCCGCCACCTAAACCCGCAGGTCACGAACA # Right flank : GCGAATGGTCGCGCGGCTCGCACCGCTGCCTGGACGAGGAACAGCCCAACCGGTCAGTACGTTTGGTCGTCTCCATCGTCATCCCTTGCGCGTTGGGCGTTGTGTCGGATGTGTGCGTGGTGGGCGTCGCGGAGGGGGTCGGTGATGTGGAAGCTGTGGTTGCCGGGGTGGTCCTCGTACAGTCCGCACCACTGCCGGTAGTTCTCGCGGAGGTGGTGGATGCGGTAGGGGCACAGGGCGAGGAGGACGAGCCGGTGGTGGACACGGTGGCCGCCCGCACTCGTCGCCCACAGGAACCACAGGCTCGCGGGTGGTTCGGTCTCCGCGGTCCACAGGCGGGACGCGTGCTCGGCGGTCTCGTCATGCTCGCCCAACTCGCATAAGACATAGGGCTTGTCTTCGAGGAGGTCTTCGGCGTCGTCGGGGCCGTCGTCCATGGCGAGCAGGGCGGGGAGTGCTTCGTCGGGCGGGAGGTTGGTGATGGCGGTGCATTGCAGCAC # Questionable array : NO Score: 3.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3418694-3418906 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGMP010000001.1 Streptomyces sp. JV180 ctg.s1.000000F, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 3418694 30 96.7 31 ............................T. CGTTCCACAACCCCGAGCTGAAGAACCTCAC 3418755 30 100.0 31 .............................. CCTCCGTGATCGTGGCCGTCGTGGACGACGA 3418816 30 96.7 31 .............................G GAGTATTCGGCGGCGAGTGCCTCCAGGGACG 3418877 30 93.3 0 ..............T..............A | ========== ====== ====== ====== ============================== =============================== ================== 4 30 96.7 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Left flank : CGAGAGCTGGCCTTCCTGCATGACCGCACGCGCGTCAATGAAGGCCGCAAGCAGACCTACGGCACACAGATCGCCGGCGTGAAGGACGGGGCACCAGTTCCGTGGCCTTGCGACGAGCCGGAACGCATGGACGAACTCCGCGCCAAAGTCGGCATCGAACCCTTCGACGAGTACGTTGCCAAGTTCTCAGTTGCCTGACGCCGACCCCGTCCGGCGGGTCAAGCCCTGAGGCTCACCAGCCATAAGCATGATCCCCCGGACGGGACCTCCACCGAGCCCCTCGTGAGGTGCAACAAACGCACCACACCCCGGGGCCAACGCCTACGGAGGACAGAGCCTCACTTCTTCCATCGAAGCTGAGCCGGCGAAGCTGGCGGCGGACAGAATGGCATCAGCCGAGCCACACGTGACCGCTCTGCGACGGAAGGCGAGATATGTCGGCTTCTCAAGAAGTAAGTAAAAACCGCCTTCCCACCACCTAAACCCCCAGGTCACGAAGG # Right flank : AGGTCGACGCACTGGAAGTAGCTGGGGTACGTCGTGGCCCCCCGCACGCAGATTCCCCCGCCACAGCGGACGGCCGCAGGCAGAGCAGGCCCCGCCTTACGCGGTGGAGGCTGCCCCTCGCCGCCGCCTACGAACGGGACCGGCGGTCGCCCGTACGTCACCGCGCCCAGCGGACTACGTCGCAGGTACCGGTTGGCCACCGTCTTCCGCCTGATACGCCCCCGGGGCCCGCTGGCTAGCGTCGTCCTCATGCGTATCGGACTGCTCGGCACCGGAAATGTCGCCCGCGCCCTGGCCCACGGCTGGCGCGCCGCAGGGCACGACGTCCTCCTCGGATCGCGCCACCCGCAGGAGCGGGGTGACCTCGGTCTGCCCGTCGCGGGGCTCGGCGAGACCGCCGCTCGCGCGGACGTCCTGGTCAACGCCACCCCCGGTGGCGTCTCTCTGGACCTGCTCCGCTCCATCGGAGCGCCGGTCCTGGCCGGCACCCTGCTGATCGA # Questionable array : NO Score: 3.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 3442890-3443081 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGMP010000001.1 Streptomyces sp. JV180 ctg.s1.000000F, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================================================= ================== 3442890 30 100.0 31 .............................. GGAGGCTGCGGCGCGAGAGCACGCCTGGCAG 3442951 30 96.7 71 .............................C ACTCGGCGATCCCCATACGGACACGGGAGTTGTGGTCCCCAGGCTGTCCTCATGGGTGGCCACCGGCTCAG 3443052 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ======================================================================= ================== 3 30 97.8 52 GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Left flank : ACCGACAAAATCCCACCCCACATCCCCAGGGCGACAGAATCCCGATCGCCGGACGCCACGGAACCAACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGACCACCGCAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCACCACGCACACACCCACGGCGGCGAGCCCACCACCCCCACCCCGGATGAGGTCGCCGCCGTCAAAGCCCACGTCGCCAACCTCCGCAACCTCCTCAAACCCGTCTAACCCCCAGGCGATGGGTCGTTGCTGGGCAGGACGGCCACACCGCGCCCCGGGGCCGACTCCACGGAAGGCAGAGCCACGCCCCTTCCACCGAAGCCGGGACAATGACACCAGTGGTGCGCAGAATGGCATCAGCCGAACCACACACGTGACCACTTTGTGCCAGAAGGTGAGATATGCCGGTTTCCCAACAACATGGTGAAGACCGTCTCCCCGTCACCTAAACCCCCAGGTCACGAAGG # Right flank : ACGGCACGGCTGCGCGCCGCCCTGTGGTCCCGCGAACGCGGGGGCGACCCTGCGCCCCCGAGTGAAGTGGCAGGTCACACCCCGCGCGGGTACTCCCCCTTCCCCGTCCCGATGATCCCGCCCGGGTCCCGCAACCACACCTGCTGACCCCGGTCGGTCACCGTCAACCCGAACTCCTCCGCACCAGGGCGACCGGCCGACTCGTACTCCCACCAGGTCTGCTCGATCTCCTCCCACAACAGCCCGATCCCGTACTGCCACACCTCCTCTCCCGAAGCCGTCGAAGCGCCACCGACCTCGCTCGTCACCCACACGCGCACCCCGCCACCGGCGACACTCTGGTGAACCATCCGCACACCGGGCAGTCGCGCCCCCGCGAACAACGCGAACCCGAGGTCCAGCAACCGGGCCGGGTCCAGACCGGCCGCCCGCGCTCGCCCCCTCCCCCGTACCTCATGCAGATCGGGCACGCGGTGCGAGCGCATCGGCATGTACGTGGC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-2.29, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-13.20,-13.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 4623701-4622999 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGMP010000001.1 Streptomyces sp. JV180 ctg.s1.000000F, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 4623700 30 96.7 32 .......T...................... ACCCCGACGACACCCTCACCAACCAGAGAGAC 4623638 30 96.7 31 .............................T TCGCGGCCTCTTCGATCCACACGATCATGTA 4623577 30 100.0 31 .............................. CGTCTGCCTGGGAAAACGGCCCTCCAGCCCC 4623516 30 96.7 31 ............................G. TGGGGTGAGGCTGTGCCGATCCTGGTGGAAG 4623455 30 96.7 31 ..A........................... GCAGCATCACGGATGTGGCGACCCGCCCGTA 4623394 30 93.3 31 ..A..........................T GTGCGATTGCGTCCGGTGCCTGGCGCTGCCG 4623333 30 100.0 31 .............................. ACGGGTTGTCGGCGAGCTTGAAATGCCATGC 4623272 30 96.7 31 ...........T.................. GGCGGCAGTTGGGCGCCTCGGTCGCCATGAC 4623211 30 86.7 31 ............AT.....A.........T CGTGGGTCGGCCAGATGTCCATGGCAGGCGT 4623150 30 90.0 31 C..A.........................A CGCTCACCATCGGGGAAATGGCCCGGCATCC 4623089 29 90.0 31 ............AT...........-.... GCGATAATGGTCGGCGTACCTGTACGACGGT 4623029 30 80.0 0 ...........C.GG......C.....T.A | T [4623014] ========== ====== ====== ====== ============================== ================================ ================== 12 30 93.6 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : TGCGTCGGGCGCGGGTTGAGCTTCGACCGTGGCGCCGGGAGGACTTCGTCGCCGACCTGGACGATCACTTGATGGACAGCCTCGGGGCCTGACGACGGGCATCGCTCACTGCTTCCTGGCTAGTCCCTGGCAGGAACGACGAGTTCCTTGAGCCGCCGAACCTCCGACCAGGAGTCGCGGGCACGCGGGCCCTGGGGGCGCGGGCCGAGCCGGTCGGCTCAAGGCACCGGTAGTGGTCGTCGTAGTCGAAGACCTCACTGATGTCGGCCACCAATGTGTTCGCACAGCGAGCCCAGAACACAACGCCCCTGGCCGACACCTGCGGAGGGCCGGTCCGCTTCACTTCCACCGAAGCCCGGCCGACGAGATCGACGGCGGGCAGAATGACATCAGCCAAGCCATGCACATAAACCCTTTGCGACAGAAGGTCGGATATGCCGGTTTCCCAAGAAGTGAGTAAAAACCGCCACCCCGCCACCTAAACCCCCAGGTCACGAAGG # Right flank : CGGGTGTTCGCGGTGCCGTTTCGGCCGCCCGTCGTTCCGTAGACACCCAGGGGCACTCGGCGCGGCACCGGGCCGCCCCGCCCACCCCACCCCGCTCTCCCAGTGCCCTACGGAGAGGCTCCCCGACCGCTCAGCCCAGCCCCTCCTCCACCAGGGCCGCCCACTGCGCCACCACCCGGGCCCGGCGGGCCGTGTCGTCGGTGAGGAGGTTGGCGAGGCCCAGGCCGCGGGCCATGTCCAGGAGGCCCTGGACCGTTTCGCGGGCGCCGGGGCGGGACTCGTCCGCGCCCAGGAGTTCGACCGCGATGCGGTGGGTCTCGCGGCCCACCCGCGCTTCCAGTTCCGTGACGCGCGGGCGGAGCTGGGGCTCGTTGGAGGCGGCCACCCAGAGGTGGAGCGCGGCCCGGAAGAGGGGGCCGGTGTAGAGGTCGACCAGGGCCGCGACCACCTCCGCGCGGCCCTGGACGGGGAGCGCGCGCAGGGCCGCCGAGCGTTCCTCC # Questionable array : NO Score: 5.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 4627624-4626985 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGMP010000001.1 Streptomyces sp. JV180 ctg.s1.000000F, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 4627623 30 96.7 31 .............................A GCGATGCGAACACGGGAGGATCTCCTGGACG 4627562 30 96.7 31 .............................G GGACCCGCTCCCTAGCAAGTGACTCGCAGCG 4627501 30 96.7 31 .............................G AGCATCGACGCGATGCTGAACAGCTTGTCCA 4627440 30 96.7 31 .............................C GGCCCTTGCCGTCCGGGACCACCGGCACTCG 4627379 30 93.3 31 ............................TC CGGCTGGACGCGGTCTATGCGCCGTACCCGG 4627318 30 96.7 31 ............................T. CCTCGCCCTCCTCGATCGGGTTCAGGCCCAT 4627257 30 96.7 31 .............................C GTGGCCATCTCACCGCCGGAGAGCCGGTCCG 4627196 30 96.7 31 .............................A TCAGGCTGCCGATTCGGGGGGTTCCTCACTG 4627135 30 100.0 31 .............................. GGCCGTTCAGGTCCTGGTCCAGCTCGATGTC 4627074 30 100.0 31 .............................. CCTCTAGGCGGCGGCCGGGGTAGTACCGCTG 4627013 29 93.3 0 .........................-...A | ========== ====== ====== ====== ============================== =============================== ================== 11 30 96.7 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Left flank : CCGACAAAATCCCACCCCACATCCCCAGGGCGACAGAATCCCGATCGCCGGACGCCACGGAACCGACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGCCCGCCGGAAGCCCTGCCCGACGGTCTCTGCCGCCCCTGCCACCACGCACACACCACCGGCAGCAACGACACCACACCCACCCCAGACGAGGTCGCCGCCGTCAAAGCCCACATCGCCAACCTCCGCAACCTCCTCAAACCCGCCTAACCCCCAGGCGATGGTTCGTTGCTGGGCAGGACGGCCACACCGCGCCCCGGGGCCGACTCCACGGAAGGCAGAGCCACGCTCCTTCCACCGAAGCCGGGACAATGAGACCTGTGGTGCGCAGAATGGCATCAGCCGAACCACACACGTGACCACTTTGCGCCAGAAGATGAGATATGCCGGTTTCCCAACAACATGGCAAAACCCGCCTCCCCGTCACCTAAACCCCCAGGTCACGAAGGG # Right flank : CGCACCATCGCTTACGTGAGATCACGGCCTCGAAGCCTGGAAGGGCGGCACCTACGGCCCCTGCTCCGGCGGGTTCCGTGACCATCCGAGCCCCTGCCCGCCGGCCCCGATCCGGCGCTCCGGAAGGCCATAGATTCCGAAAGGCGGGAACAGGTCGACGCGGCGCGGGCAGCCGCCCTCCGCGCACGCCCGACACAACAGATCCCGGCCCCGATCGGTGTGCCGCACGGCAGTCACCGGAGCGCGCCAACATGCCTCGCACGTGCGGACATCCGTGGTCGACAGATCGGGGCTCATCCAGCGCCCTCAAGCGCAGTGGCCCCCTCGTGACACGGACAGGCGCACGTCGGCAGACGGCACAGGGCATGCACACCGGCCAGGTCTGTCACCAACGCGCTGCGACACACCACGCTGCACGGACCGTCCGCACCGGCCGACAACGCGTCCAGCGCTACAACCGGCTCCCCGGCCTCATCGCCCCAGGTGATCGGATGACCTCG # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Alternate repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 4632822-4632001 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGMP010000001.1 Streptomyces sp. JV180 ctg.s1.000000F, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4632821 29 100.0 32 ............................. GCTTTCGGGGCGATCCTGGCTTACCGGGCCGT 4632760 29 96.6 32 .........A................... AGGCCGACCAGCGGGCGGGTCTCCAGCGCGAG 4632699 29 100.0 32 ............................. ACCCACTGGAGTGCCGACTTCACCGTGGACAC 4632638 29 96.6 32 .................T........... TGGAGTGGAAGGCAGCCACCGTTCGTCAGTTC 4632577 29 100.0 32 ............................. TCTTCTACGTCACCTCCGACATGACGGCCCTG 4632516 29 100.0 33 ............................. ATCCCGGTGAGGACGCAGGCGCAGACAGCGCCG 4632454 29 100.0 32 ............................. CACTTGTTGTCGAGGTACATGTCGTAGCCGTT 4632393 29 93.1 32 .C..........................T CGCGCAGGATCAGCAGGGGTTCGTGGCTGGTG 4632332 29 100.0 32 ............................. TATGTTTCGGCCACAGCGCCCACCCCGGCGGC 4632271 29 100.0 32 ............................. TAAGTCACACCAAGCACACACGAGGAGACCCC 4632210 29 100.0 32 ............................. GTATCGCGCGTGAAACGGGCGCGCCATCCGGT 4632149 29 96.6 32 .......T..................... GGAATTGCCACTCGTATGCTCGTGGATTACGA 4632088 29 100.0 32 ............................. GCCGCCGCCCTGCGGATGCTGCTCCAGGACGG 4632027 27 82.8 0 ............--.A.....T...C... | ========== ====== ====== ====== ============================= ================================= ================== 14 29 97.5 32 GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : GCGAGCGCGGGCATGCGTGATGGCTCCTGTGACGGACACGGGGACGGCCGACGACCGGGGAGGGGAGAGCCCTGCGCGAGCGAGCGCCGGGCGGTGGCCGCGCGATGACCGCGAGTCCCCCGGCTGCCGGGTGGCCGAAGTTGACGCGTCGAAGTCTCGCCGCGCACCACCCACGGGGTCGTCCCCCCAGCAGCCGAACCACGCCCTGCCCGAAAGTGCCACACCCCGCCGACCGACACCCCTCGGAAGTGCTACCGCCGGGCATCCTTCTTCCGACCGATCGCGGCGGCTGGGGGCGATGGGCTGCCGCCAACAGTCCGGGGCACGACCGAAGTACGGGACAGGGCGCTGGGTGAACTGGCAGGCTGGGAGGCAGATCCAGGAGGTGCTGACTTCCGCCTACCTGGCAGCGCATTCGAAACTTAAGGCCGCATATGCCCGACTCTCAAGAAGTTCTCCAAAACGACCTCTCGGCCGGATAAACCCGCAGACCACGAAGG # Right flank : TCCACACCCCCGCCCGACTCCACCCAGCCGGGCCCCCTCCCCAGTCGCGATACGTACCCCCACAGCCCCCGTCCACCCGGCAACACCGCAGGTCGCGTGCCCTATGGTCTCCGTTCATGAGCCGAACCACGCCGCCCCGCCCGGTGAACATCGAGGCGCTCTTCCCGAAGCTGGGCGCGTTCCGCGGTACGACGACGCGGCTGCACCCGCGGCCCGGCCGTCCGGACGCGGCGGCCAGTTCGGTCGGCGGCCCCGTGCTGTGGCCGGCCGACGAACCCTGGCCGGTCTGCACCGAGCCGCACAAGCGCAGCAGCGGGTACCGCATCGCGGACGTACGACGTGAGCGCCAGGTGCTCGCGGACGCCTGGGCCCGGGACCGCCCCACCGATGAGGAGCGGGACCTGCTCAAGGAGCTGGGCCGCAGGCACCGGCAGCGCGAGATCGCCGACACCGATCCGATCCCGCTGGTCGGCCTGGCCCAGTTGTATCGGCGGGACGTC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //