Array 1 35262-36694 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWPW01000017.1 Chromobacterium violaceum strain GN5 Contig17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 35262 29 96.6 32 .........G................... CGTCTGATCGCCATCCGCGACGCCATCTGCGC 35323 29 96.6 32 .........G................... GCGCGAGGGCGATGGCTCCATTGCTTGCCATG 35384 29 96.6 32 .........G................... ACGCCATGGTGAACGAAAAATTATCTGCGACG 35445 29 96.6 32 .........G................... GGTTTTCCTTGTAGCTGCCGTGGATGGCTACA 35506 29 96.6 33 .........G................... GGCATGGGGCCTGCAACGGTTAAGCCAGATAAA 35568 29 96.6 32 .........G................... GCCTGGCTAGGCGAAGCCCCCGCTTGCGGGTG 35629 29 96.6 32 ............................C CGATACAGCCAGCGCATACGCCAAGGCCGGAC 35690 29 100.0 32 ............................. TCGGTCGCGGCCAGGTTTTCCATGGGCAGCTG 35751 29 100.0 32 ............................. ATATATCACTCTTTTACGCCACTTTTACGGAT 35812 29 100.0 32 ............................. CGGCTGGAAGAAATCCAGCACATGACTTCGCA 35873 29 100.0 32 ............................. TAATCCCAGTAGCCCAGCAGGTCGCGCGCCAC 35934 29 100.0 32 ............................. TCGAGTCTACGGCCCTCGTAGGCGGCACGATG 35995 29 100.0 32 ............................. GGGGCCGACGTGCTGGCCCACCTGATCAAAAC 36056 29 100.0 32 ............................. TTGCCGTGCGTGAAATTCTCCCGATCAGGGCC 36117 29 100.0 32 ............................. ATGGGCCGCAAGGAAAAGACCGCACTGAAGGA 36178 29 100.0 32 ............................. GCAACTACCGCGCGGCCGCCGACTACGCAGAC 36239 29 100.0 32 ............................. CGCGAGACGAAAGCAGGCCGCGACGGCGTACA 36300 29 100.0 32 ............................. GGAGCTCTCAGGAATGTGCCCTGATTGCAATG 36361 29 100.0 32 ............................. CTGACAAACGACGGCAAGATCACCATCGCAGA 36422 29 100.0 32 ............................. GAGGGCAGCATGACACCCACCATCGCCAATCT 36483 29 100.0 32 ............................. ACCAGGACGCGGTGTGGGAGAGCCTGCAGAAC 36544 29 100.0 32 ............................. CCCTTGAAGGCGGCACCGCGCCCTGGCAAAAA 36605 29 89.7 32 .................C.......G..A AAGCCAGTGCCTCAAGGCTTGAGGGTTCGAGA 36666 29 69.0 0 A.A.........GTT..........GTGA | ========== ====== ====== ====== ============================= ================================= ================== 24 29 97.3 32 GTGTTCCCCACGCACGTGGGGATGAACCG # Left flank : TGCCCACGCCGGGTGGGCCCCACAATATCATCGAGTGCGGCTTGCCAGACGCCACCGCCAGGCTCAGCGGCTTGCCTTGGCCGATCAGGTGCTGCTGGCCGATCACTTGGTCGAGCGCTTGCGGGCGCAAGGCCTCGGCCAGCGGTTTTTGCGGTTCGACGGAAAAAAGATCGGACATGGCGCGATTTCGGCGGGATGGGGCGGAGAAACAGTATACCAGTTGGGGACACGCATGAAAAAAGCGCCGGCCAGGCGCTTTTTGCTTGCATGTCGATGGAATGAAGGTACGCTATGGCTGCTGACCTAGCCTAAGCCTTGCTGTTGCGGAAGCTTGGCGTTCAGCATCAGGGGCGAGCGGTGTCGGACCCTTGTGCAAGGGACTATTTGCCAAGGCCTGGCGGGGTTTGCCGTGCTGATTTGAACGCCGCTTCATGACTGGGAAAATCGGTAGAATTTTAGATCGGATTTTTGTCTTTAAAAATCAGCAGCTTGAAAATGGT # Right flank : ACGGGGGACGGCTGGAGTGGCGTCGCGACGCTGTCAGTCCGGCCGCGTCCGGCAACAAAAAAGCGCCCCGTGGGGCGCTTTTTTTCTGCACAACGAGTAAGAAGGCTTAGGCGCGCTTCTTGAATTCGTTGGTGCGGGTGTCGATTTCGATCTTTTCGCCGGTGTTGACGAAGGCCGGAACCTGAACTTCGAAGGTGGTGCCTACCAGGCGGGCCGGCTTCAGCACTTTGCCCGAGGTGTCGCCGCGCACGGCCGGCTCGGTGTATTCCACTTCGCGGATCACGGTGGTCGGCAGTTCCACGGAGATGGCCTTGCCGTCGTAGAAGGTTACCTGGCACACGTCTTCCATGCCGTCGACGATGTAGTTGATGGTGTCGCCCAGGTTGTCGGCTTCCACTTCGTACTGGTTGAATTCGGTGTCCATGAACACGTACATCGGGTCGGCGAAGTAGGAGTAGGTGCAGTCCTTGCGGTCCAGCACCACCACGTCGAACTTGTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCACGTGGGGATGAACCG # Alternate repeat : GTGTTCCCCGCGCACGTGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 43968-44118 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWPW01000017.1 Chromobacterium violaceum strain GN5 Contig17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43968 29 100.0 32 ............................. CAGCCGCCGTACAGGCGAGACCACTTGATGGA 44029 29 100.0 32 ............................. CCGGCATGTCCCGCGCTCTTGCTCGGGCCATT 44090 29 96.6 0 .........................G... | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : CCTGCTGGCGCAATGGCTGTACAACGTGCCGCCGCTGTTCCACCTGTCCGCCGCCAGCCTCAAGGCCCGCTTGCCGCAGTTGCAATGCGCCGACCGCGCCTTCCGCCCCTTGCACGAGCAACTGGCCACCCAGGCGCTCACCGGCTTTGCCTGGTTGAACGCCGAGCATACGCTGCAGCAAACCCGTTTCGCCGACGGCAGCCGGCTCACCGCCAACTTCGGCTCCGCGCCGGTCCGCTGCGATAAGCAAACCCTGCCGCCGCAAAGCCTGCTGGCCGAGCTGGCCGGCCAGCCGCCCAGGTTGCTGCCAGTGGCGGATTGCGCCGGCAAGTAAGCGGCGGCGATAATGCCGATGTCGTTTTGCCGGTCATGGCGCGGCGGTTTGCCTTGGCCGGCGAGCGGCATTGCCGAGCGATCAAGATGGTGATTTTTTGAGCGGAAAAATCGGTAGATTTTTGGGGTGGGTTTTTATCTTTAAAAATCAGTATCTTGAAATTTGT # Right flank : GGCGGTATGCACATTTGCGTCCGGTTTGGTTGTGTGTTTCCCACGCCCCTGGCTCGAGAAAAGACGTGGCTTTCTTTATGGGTAGTGATATGGGATTTCAAAAATATGGGGATTGAAGCGTGGGCGATGGTTGTGGGAATCGTCAGGCCAAACGGCAGGTACAACTCTCGACCCTGCAAGTCGCTGCCTAGAGAAGTCTCATGGCATGAGTTATGTCAATATTCTTATTGATCGAAATGACAGTGTACTTTTAGGCTGATAGCCTGCGCGCTTGGGTTGGTTCCAGTTGGCAGATCGGTTTTCACTGGGAGAGGCGATGCAGACAGAGTTGGACGGCAAAAAAGAGGTTCATGAACCCTCCAGTGTAACCGGACTAAGTTTTGATGATCTGCACCCCGCAGTCCGACAGCTATGGGCCAAAAGCGGTGACCCGATTGGCCATGGTCTGTTATGTCACATGCTGGACGTGGCTGCGGTGACCAGAGCTTTGCTCGACTACT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 52963-53541 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWPW01000017.1 Chromobacterium violaceum strain GN5 Contig17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 52963 29 100.0 32 ............................. GGCGACGCGGCCTTGGATGCGGATGGGTATTA 53024 29 100.0 32 ............................. ACCGCGCTCGACATCCATAGCCCATCCCGCGT 53085 29 100.0 32 ............................. CGCCCAGCGGCTGGACACCGAGCAGTTCCACA 53146 29 100.0 32 ............................. TCGGCGGGCGGCGCGGGGTGATCTCCAGCGGT 53207 29 100.0 33 ............................. GGCGCATCCCCACATTTGGGCGGCCCAGCTTCT 53269 29 100.0 32 ............................. CAGCCGCCGTACAGTCGGCTCCATTTGATGGA 53330 29 100.0 32 ............................. ACACGGCCCAGCGGCCAACGTGTGCGCGCGAC 53391 29 96.6 32 ...............A............. AAACTCACGACAGAATCATGGGCATCGCCATG 53452 29 93.1 32 ...........A..T.............. GTTCACAAGAAAAGCATCGAGGACGACAAGAT 53513 29 82.8 0 ....................A...TG.TT | ========== ====== ====== ====== ============================= ================================= ================== 10 29 97.2 32 GTGTTCCCCACGCCCGTGGGGATGAACCG # Left flank : CGGACATCGAAACCATGCTGGACGCCGGCGGCCTGGACAAGCCGGAGGCGCAGGGCGTGGTGGACGCGGCGTTTCCGGAAGACGAGGGGCTGGGCGATGCTGGTCATCGTACTTGAGAACGCGCCGCCCCGGCTGCGCGGCCGGATGGCGATCTGGCTGCTGGAAATCCGCGCCGGCGTTTACGTGGGCAACTACAACCGCAAGATCCGCGATTACCTGTGGCAGCAGGTGGAAGAGGGGCTGGAAGACGGCAACGCGGTGATGGCTTGGCAGGCCGCCACCGAGGCCGGCTTCGACTTCGTCACGCTGGGCGCCAACCGCCGCATCCCGGCCGAGTTCGACGGCGCGAAATTGGTGTCTTTTTTGCCGCCGCCGGTGTCGGAAGCGGGGGGCGAATAGAGGGCGGGTGGAGTGTGGAGAAAGGTAGGTTTGGCTCTTTAAAAATCGGTAGATTTTTGAGTGGCAATTTTGTTTTGAAAAATCAGTTGCTTGCAATTGGT # Right flank : TCTGCCCGTCTATCGCTTGCTTAATCCACGGCCGTCGCGTTGCCCGATGCGCTTGCGATCGACGCGCCGCGGCTTGCCGTCCGAGGAGGGCGCTTCCTATGCTGCAAGAATCGATGTCAGAGGAATCGCCATGCAGCAGTTAAGAGTGAGTGTTCTGGTTGCCGCGCTGTTTCTCGTCGTCGCCGTGGTGTCCAAGACGCTGGCCAGCTCCGTCACGGAGACCGTGCCGGTGTGGCTGGGCAGCGGGGTGACTTTTTCCGCGTTGCTGATTTCTCCGCGCTGGCGCTGGCCGGCCATTCTCGCCGGCGTGTGGCTGGCGTCGGCGATATGGGGGATGTCCGCGCATGGCCTGGGGCTGGCCGGCGCGGCAGCGTTCGCGGGGATAGAGGTGGTCAGCGGAGCCGTCGGCTGCTGGGTGGCCGGACTGGGGCGCAACGATCCGGATTCCCCGATCGGCATGGCCTTGCTTCTTTGCGGCGCGGCGCTGGCGTCCTGCCTGG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //