Array 1 98261-95422 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQCE01000059.1 Klebsiella pneumoniae subsp. pneumoniae strain KPH+01 120-HLP91_NODE_2.ctg_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 98260 29 100.0 33 ............................. GCCCGCGCGAACCTGGGGCTGGGAGATTCAGCG 98198 29 100.0 33 ............................. TTGGCGGTCGACGGTGGCGAACTGCCTGATCAG 98136 29 100.0 32 ............................. GGGGGGAAATCAAGGTCAAAGTTGAGCTGGAT 98075 29 100.0 32 ............................. CCTCGATCATTCTTGCCAGTTGGGAGTCGGAC 98014 29 100.0 32 ............................. CACCTCGCCTATAAATCGTACCAGCCTGACAG 97953 29 100.0 32 ............................. TCGTAGCTAATAAATTCGTTGCTCATTTGAAA 97892 29 100.0 32 ............................. GCATCGCTCGCCTCGTTCGGTGCTAACGCTGG 97831 29 100.0 32 ............................. CGGCTGCGCTGTTGCACATAGCCGCTCAACCT 97770 29 100.0 32 ............................. CGGCCGCGTTCTCCCCTGTGGGAGGGGTGGGG 97709 29 100.0 32 ............................. GAATTTATTGGGAGGTGATAGCTCTGGCAGGT 97648 29 100.0 32 ............................. CGTCACGACGCCGGCGACAGTGACATCATCCA 97587 29 100.0 32 ............................. GGTATGCAGGGCACACGCCAAAATAATTTTGC 97526 29 100.0 32 ............................. GCTGGCTCTTTTCCTTCTGCCGCTCGGCGGTC 97465 29 100.0 32 ............................. CCGGTGGAGCGCCGCGGGCGAGAGGTTCTCTA 97404 29 100.0 32 ............................. CCGCTCTTTGTACGCGACGCCGGACGCTGCGA 97343 29 96.6 32 .......T..................... TCGCAATAGGCACTGTCAGCATCCAGAACGTA 97282 29 100.0 32 ............................. CATCGCTTTCCATCGCAGCTTTTTCCAGGCGC 97221 29 100.0 32 ............................. GTGACGCGCTGCAGTTTGCCAAAACCCTGCCA 97160 29 100.0 32 ............................. ATTTTGCGTACGCTCTCCCACAGCTGATCGTG 97099 29 100.0 32 ............................. TTTCCGGCAGCGTAGCCAACCCGGCCAACCGT 97038 29 100.0 32 ............................. CGGATTAAACGTAAGGCCGCGCGCTGGCGTAA 96977 29 100.0 32 ............................. GTGGTTTGTTACCGTGTTGTGTGGCAAAAAGC 96916 29 96.6 32 A............................ GGTTTATAGAGGCTGAGGTATTCACAATGCGC 96855 29 100.0 32 ............................. GGCGCCGGCCTGATCACTATCGGGTAACGGTG 96794 29 100.0 32 ............................. GGCCTGAACCAGAGCACGATCTACACCTGGAA 96733 29 100.0 32 ............................. ATTGGGTAGAGCAGGCGAACGGATGTCTTTTT 96672 29 100.0 32 ............................. TTTTCACGGTCGAAGTTGTGCATGCTTTCTGC 96611 29 100.0 32 ............................. GGCTCGGTTGATATTGCCCGAAGTACGGCGGA 96550 29 100.0 32 ............................. ATTTCGCACACGTCCATTACGAGGTTTTTACA 96489 29 100.0 32 ............................. TTAGAGGGGAATTATCAGCGAAAGAAAGTGAA 96428 29 100.0 32 ............................. GTTCGAGCAGCAATTGCGTGATCACCCGGATC 96367 29 100.0 32 ............................. TTCCATTGCGACATATTTATTAACCCTACTAA 96306 29 100.0 32 ............................. GAGGGGCCATGGAGCCGGTGTTGATTGCGTCC 96245 29 100.0 32 ............................. GACGTAAACGAATTATTTAATCTTGACAGTTA 96184 29 100.0 33 ............................. CGCCGGTCAGTGGTCAGGCAGGAAAAAAGCAGC 96122 29 100.0 32 ............................. CTCGAAAACGAACAGCCCGTAAACCATCATCA 96061 29 96.6 32 .........A................... CCCGTAAAGAACGCCAGAATCGGCATCTTTTA 96000 29 100.0 32 ............................. GGTTACTCCTTATATTATTTGTGTCGTTGTGA 95939 29 100.0 33 ............................. ACGAACGTCGCAATCGTTCCCTGTTTGACCAGC 95877 29 100.0 32 ............................. CATATATTCGGCATTAATTGAGGTTCCACCAA 95816 29 100.0 32 ............................. AAAAACGTTCCAGATTCACGGATAGCGGAAGG 95755 29 100.0 32 ............................. TAAAGGTTAGACATTGGTTAGTTCCTCATTGT 95694 29 100.0 32 ............................. CATAATCAGGAGCAAATCAGATGAGCTATAAA 95633 29 100.0 32 ............................. GCGTAACGGGACGCGGAACCGACAGGAAGCCC 95572 29 100.0 32 ............................. CAATCAACAGGTGCGGAACCGGTTCAAGAATA 95511 29 100.0 32 ............................. ACTGATATCACCGAACTGGCTCGGGCCATGAA 95450 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 47 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGTG # Right flank : GTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 80427-79367 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQCE01000054.1 Klebsiella pneumoniae subsp. pneumoniae strain KPH+01 120-HLP91_NODE_15.ctg_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 80426 29 100.0 32 ............................. TAACTTTACCCCGGATCCTGATGAACCTGTAC 80365 29 100.0 32 ............................. TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 80304 29 93.1 32 ............CA............... GCACCCTCACGGATACCTTTTGCACAGTGTTA 80243 29 100.0 32 ............................. TTACCAATGGGGAAAAATCTTCATTTGTAAAT 80182 29 89.7 25 .....T......CA............... AACATCAGTGGAAATCCACTGCGGC Deletion [80129] 80128 29 89.7 32 ......T.....CA............... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 80067 29 100.0 32 ............................. CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 80006 29 93.1 32 ............CA............... AACAATTTGAAGTTTCTGCGCCAGGTCGTTTC 79945 29 93.1 32 ............CA............... AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 79884 29 100.0 32 ............................. TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 79823 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG T [79812] 79761 29 86.2 32 ............CT.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT C [79750] 79699 29 93.1 32 ............CA............... TGAGGCTGCTGACGGAGAATTGGGACCTGTTC C [79688] 79637 29 89.7 32 ............CAC.............. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 79576 29 93.1 31 ............C..A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 79516 29 86.2 32 ...C........CA............T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 79455 29 93.1 32 ............CT............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 79394 28 79.3 0 ..........A.CA..T......-....A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 92.9 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAAC # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //