Array 1 3311848-3310721 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFHAO010000001.1 Escherichia coli strain 2COLEC 2COLEC-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3311847 29 100.0 32 ............................. TACTAAAAGTCTGGTTCACGAATATCAAAAGG 3311786 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 3311725 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 3311664 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 3311603 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 3311542 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 3311481 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 3311420 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 3311359 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 3311298 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 3311237 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 3311176 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 3311115 29 96.6 32 ..........................T.. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 3311054 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 3310993 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 3310932 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 3310871 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 3310810 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 3310749 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3341720-3340104 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFHAO010000001.1 Escherichia coli strain 2COLEC 2COLEC-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3341719 29 100.0 32 ............................. AGCACAAATATCATCGCTCAAACCACTTACGG 3341658 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 3341597 29 100.0 32 ............................. AAAATAAATGATAATCAGACGGTTAGCAACGT 3341536 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 3341475 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 3341414 29 100.0 32 ............................. TATTCGTAGGGTTTGCGCCGGAAATAGGCGCT 3341353 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 3341292 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 3341231 29 100.0 32 ............................. CGCCACCAGCGATAGAGCCGCAAACAGAGCCG 3341170 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 3341109 29 96.6 32 ............................C AGGTCCTCGTCAGATACAGTAGTCACAACACC 3341048 29 100.0 32 ............................. CACTGACAGTGAAGCTGAATTACAGGCAGAGG 3340987 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 3340926 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 3340865 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 3340804 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 3340742 29 100.0 32 ............................. CAGTTGAAGCGCTTTAAAAAATTCTGGACGGC 3340681 29 100.0 32 ............................. AGATCGACATGAGCCGCCGCGCGACGAATAAC 3340620 29 100.0 32 ............................. TACCGATAATCGGTACAAGATAGTATTTACAT 3340559 29 100.0 32 ............................. GACTATCGCGGGCTGCTGAAATCAACCGGCGA 3340498 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 3340437 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 3340376 29 100.0 32 ............................. ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 3340315 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 3340254 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 3340193 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 3340132 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //