Array 1 4145-5428 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTYA01000023.1 Bacillus cereus strain AFS005998 AFS005998_110_F1_Contig23_140523, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 4145 32 100.0 34 ................................ ACAGATTGCAGCTGACTATGGTTTGTCAGCAATG 4211 32 100.0 32 ................................ TCCAATCTCTTGCGAAGACCCTTGGCTTTGCA 4275 32 100.0 33 ................................ AATTTTATCAAAACTATTTTTGGCTATACTCAG 4340 32 100.0 34 ................................ TCAAACAAATGGTAAACCTGGTCACGTGTCAATT 4406 32 100.0 34 ................................ CTTGAATCCTATCTCGTTGACTCCCATGATTACA 4472 32 100.0 34 ................................ GACGTCGCCCAGATCATCGCGCGTTGTTGCGGTG 4538 32 100.0 35 ................................ CAGAAAGCAAGACTCTACTTCGATACAATCTACGG 4605 32 100.0 33 ................................ CTATATATAGCCAGCGTCCTCTTTTTTATATAA 4670 32 100.0 35 ................................ TTTTGTTGCGCCTAAGTCTTTCCAAGGTCCTTTTA 4737 32 96.9 33 ...........A.................... CTTAGAACCTATAAAAGAACAACCTTCTACCAA 4802 32 93.8 34 .........C...A.................. ATTTGGTAGCGCATTGTTTATGGATGCACGATTT 4868 32 93.8 36 .......T.......A................ ACAATTCCTCGTGGTATGAACCCTGAAGATGTTAAA 4936 32 93.8 33 .........C.........T............ ATGCCAATCGGTGTCCAAGCCGACTTCATTAAC 5001 32 93.8 34 A..........A.................... CCCTGCTGATGCAACATCGCTACCTGCATTTTGT 5067 32 93.8 34 .........C..........A........... GAAAAAACGCTTGATGACTTAATGCGAGATGAAG 5133 32 93.8 34 ..A........A.................... GATGATACAGAAAAAATAGTACCAACAATCCGAC 5199 32 96.9 34 .........C...................... TCCAAGGGGGAACTGGGAGAAAGTAACTTAATGG 5265 32 96.9 34 .........C...................... GAATACGATTATCAAGATGAAAGCACAAAAAAAG 5331 32 93.8 34 .........C.........T............ TACCTCGGGTTTATATTTATCTGGAACGCTCATA 5397 32 96.9 0 ..............G................. | ========== ====== ====== ====== ================================ ==================================== ================== 20 32 97.2 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TATCTAGTTATATATTAAAAGTTGAACACAAATAAAGAGAAGAATAATTAAAGTATTTTTGAGTTAGCAAAATAAAGGAATTTTTAGTATTCAATATTCTTAAGAATGTTATATCATAAAAAAAGATCAAACGATGATATAAAGAATAAACTTGATAGGTAGATAGAGAGACAATATATAGTGAATTTTATTGTAAATTACGACTCAATATATTAAGGGTATTATGAAGCTATACATTTTTGTTAATTAGTTAGTTAATAACTATGAAAATAAGGTCGAATATATTGATATAAAAGAATGAGTTGATTTAGAAAACCTTTAATTTTTTAGGTGCGAATGTATAGCAAACATAAAATTCCTAATACATTCGCACCTAGAATTCTCATGCTTTATGATGGGAATTTATGATTTTTTATACAAATTAGTTTATTAAATAAAAACATTTTTATATTTTTGGATAAAACTAACGTATTTGTGGTTGATTTCGAACACAAATCGGT # Right flank : TAGTTTAGTAGATACTCAACTGGAAGTATCTACATCTGCAGTATCTAACAAACATGTAAAAAATATGAAATGGAGGGAGATTGAATGACCTACATTGCTCATATACGCGAGAGTGACAGTCAAGTACAAACAGTCGAAGAACATTTATTAGGAGTAAAAGAACTAGCTGAAACCTATGGAGAAAAAATTGGTATAAAACATTTAGCTGGTTTAGCAGGTATGCTCCATGATATGGGTAAATACACCAATGAGTTTAAAGAATATATATTGGAAGCAGTAAATAATCCTAATTCTCCACCTAAAAAGGGGAGTGTTGATCATTCAACTGCAGGGGGGAAATTGTTATATCAATTATTCCATACAGAAAATATTATTCCTTACAAAGGGATAATATCTGAGATAGTGGGAAATGCCATCATTTCTCACCACGGATACCTTCAAGATTTTTTAAATCCAGATTTAGAATCGCCCTATTTAAATAGAGTGCGAGATAAGCAATT # Questionable array : NO Score: 8.81 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 13759-15314 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTYA01000023.1 Bacillus cereus strain AFS005998 AFS005998_110_F1_Contig23_140523, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================================================================================== ================== 13759 32 100.0 35 ................................ AAGAGTTAGATATCTAAGAAAAAAACATAAATTAA 13826 32 100.0 34 ................................ TATTTTGAAGATAGTAACGGAAAACCGCTAGAAC 13892 32 100.0 34 ................................ ATAGAGGACTTAGTAACGAATTTAAGAAGGTTGC 13958 32 100.0 33 ................................ TCAATTAACCCCTGAGGAGGTATTTTTTTTACC 14023 32 100.0 34 ................................ TACTTATACACCTATTGATAAGTTAGAGGGAGTT 14089 32 100.0 33 ................................ TCTAAATTTTGATTTAGAAATGCATCCGTAATA 14154 32 100.0 34 ................................ GTAAATATAAGGTCAGCATTTGCCGACGGCCCAT 14220 32 100.0 34 ................................ CCACTGGGAACGACTCCAATCCACATAAGCAAAG 14286 32 100.0 35 ................................ CGCTCCCACAAGGGGTGACTGATAAGAATGCCTAC 14353 32 100.0 37 ................................ TTTTGGGACGAAGCAGAAGAGATTTGCAAAGCTGCAA 14422 32 100.0 35 ................................ ATTTTGGTACAGGATTTGCAGCAGGTATTGGAGAG 14489 32 93.8 34 ..............T....A............ AGAGGGCGTTGATTATGTGTAGGAAAGTAATTTT 14555 32 87.5 33 ..........TG..G......A.......... GATAAAGGGTTTGCAATCATAAAAGATATTGTT 14620 32 90.6 36 ...A......G........A............ TCTGAGGGGATACCTTATATGGAAGAACTAAGAGGA 14688 32 90.6 36 ...A......G........A............ TCTGAGGGGACACCTTATATGGAAGAACTAAGAGGA 14756 32 93.8 33 ...A...............T............ TATAAAAAAGAAGTATGTTGATTTAGTTAAGCA 14821 32 93.8 35 .........G...A.................. TCAATACATAAATCCAAAAAACTAACAATCGGGTC 14888 32 93.8 35 ...........C....A............... ACAAATGAACGTGTAACAAATGGATTTTTGCTACT 14955 32 93.8 33 ...........C...C................ TATATTGGTCGTACAGTTAAATTAAATCGTCCG 15020 32 90.6 33 ..................AT...A........ CACCCAAATATCGGAAAATTATAGAGTTTTTTA 15085 32 81.2 100 ....T....CT.T......T..T......... CTCAATAGAAATTGTGGAAGTTTGAAACACAAAAATCAAACCCCTTATAGGGGTTTGGATTGGGATTTTTGTCATCACATCGTATTTACTGTACATGCTG 15217 32 87.5 33 C.........T..AT................. CCGTTAACGAAAATATAAAAAGCATACGTGCCG 15282 32 75.0 0 ....T....C.......CA.....T.A.G.C. | A [15305] ========== ====== ====== ====== ================================ ==================================================================================================== ================== 23 32 94.4 37 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : AGATGAATATCCACCATTTTTATGGAAGTAGGTGTAACAGTTGCTAGTATTAATAACATATGATGTAAGTACAGCTAACAGTATTGGACAAAAAAGACTGCGAAAAGTTTCGAAAACATGTCAAAATTATGGCCAACGAGTCCAAAATTCAGTGTTTGAATGTGTTGTGGACGCAGCTCAATTTGCTACTTTAAAAATGGAATTAATTAAAATTATTGATGAGGATGAGGATAGTCTCAGATTTTATCAGTTAGGTAACAACTATAAAAATAAGGTTGAACATATCGGTATAAAGGAATCCGTTGATTTAGAAAGTCCTTTGATTTTTTAGGTGCGAATGTATAGCACACATGAAATTCCTCGTACATTCGCACCTGAATTTTCATAATTTATGAGTGAATTTTAATATTTTTCATACAGGTTCTCTTATTAAATAAAGAAATATGTATATTTTTGAACAGAATTAATGTATTTTTGTATGATTTTAAACAAAAATCGCT # Right flank : TGGTAAGATGCTTGATATTAATTTAGTGCCTCTGCTGGAGTAAGTGGCACTGCTTCAATTCATACAGCAACTAGTGTTGAACCAATTGACATTACTAGTATGCAGATTACGAAAAGTATAAATTCTGATCCTGAGAAGGATAAAGTTTCAGATACGATGGGGATGAAGCATGGTGTTGATCTTGGAGCTTATATTTTTTATGGAAGTATTCATATGTAATAAGCAAGGAGACAGATTCACCAAAGGTGATTCAGAAAAGATTAAAAATGAACTGGTTACATTGTTTGGAAATGATGGGTCAGCAGCATGCCCTGAGGGAAGTATAGAAGTACATAAAGTTTGTTGGTGGAAGCATAATTCAAAAATTGGCCAGTACTCTTCCGCAAAAGTACACCGTTTACTGGATATTAAGCGGAACATTGACGAACCAAAAACAACTGATGACTATAATATTTTGGTAAATGAATTAAATAGTTTAAAAGTTACGATTATTGATGGAC # Questionable array : NO Score: 8.47 # Score Detail : 1:0, 2:3, 3:3, 4:0.72, 5:0, 6:0.25, 7:-0.24, 8:1, 9:0.74, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-30] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //