Array 1 2767-2259 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCYZ01000486.1 Pseudomonas aeruginosa strain 88 scaffold_485, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2766 28 100.0 32 ............................ ATAGGCATAACTCCCGTCTGGACCGCTAGAGA 2706 28 100.0 32 ............................ TGTCCGGGGAAGTAGATGAACGAGCCGCAGAC 2646 28 100.0 32 ............................ AGTCAGTCGAAGAGCCGGATTGGGCTGGTAGA 2586 28 100.0 32 ............................ GTAGCGCTTGCGGTCTGCCGGGTCGACCTCGG 2526 28 100.0 32 ............................ GAGCAGGCAGAGGCGGAGCGGCCGGAGGTTGT 2466 28 100.0 32 ............................ TCGGTGATGCCCCGGCGAACCGGGGCGGAATG 2406 28 100.0 32 ............................ ATCGACGCCGCCCTGGGCCGCCTGGTCGAGCC 2346 28 100.0 32 ............................ ATCGAGGCACTGGAAGCTGAAGAGTGGCTGGA 2286 28 92.9 0 ..G.....................A... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGGGCGCGCAACAACCGCTGCTGTCGGAAGAAATAGTGCGGGGCTAGCTGGGTATGGCCGTGCATGGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGGCGGCAGGGAGACAGGCCGCTCGTGGGTATGAGGCCAGCAGGCTGTGGCCTGCCGGCGAGCGAGTCGCCGGCGGGAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGACTTGTACGAAGAGTCTGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGGTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGGTCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGATTTCACTGCCACGTAGGTCGTAAAGCAGCCCTGAAGTATTGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCGTTCCCTGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGGATGCGTTTCCGAGCCTCCTCCTCACCCAGGTCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAATCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCGCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 757-1384 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCYZ01001135.1 Pseudomonas aeruginosa strain 88 scaffold_1134, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 757 28 100.0 32 ............................ CGCTCTATGCGTCGCAGCAGGTCCTCGGTGAC 817 28 100.0 32 ............................ GTCAGCAGGCGCAGGAATAGCTTTCACCAGTT 877 28 100.0 32 ............................ TGCGGGGCTGCTGGCAAGGTTGGAAGCTGCAC 937 28 100.0 32 ............................ ATGACCCAAGCAAACAACGGAAAGATCACCAC 997 28 100.0 32 ............................ TTCTTCCCGCGCTTGCTGTTGCGGAACTCCTC 1057 28 100.0 32 ............................ TGGGAGTGGCCGCGCATCAACGCCGGCTACTT 1117 28 100.0 32 ............................ GAAACCAGGGAGCCCATCTGATCGAGCCTCAG 1177 28 100.0 32 ............................ AGGATGTCGCCGTCCGTGACAGCAACTGCTAT 1237 28 100.0 33 ............................ TTCGAGGCGCTGTACGCATGCCAACAGTGGCTA 1298 28 96.4 32 .....T...................... CGTTGATCTAATGCGGATGCGGGTGGAAACAG 1358 27 78.6 0 ...........CGC.......C..-..G | ========== ====== ====== ====== ============================ ================================= ================== 11 28 97.7 32 GTGCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ACCGCTTYCCGCRCAACGCCACGCTGTACCTCGACACYCAGGCRCCGCCCRGCCTAGTTGTTCGAGAGCGCGAAAGCGYGCCTGAAGTCGGCGATCAACSTCCTYGCCMTGACCTGCCTGCTCGACGARAACGAAGARCCCGGCGAMACCCTCGCCTACATCAACGGCGCCTTGCTGAAGCTGGTCAGCGACGCCCTCTCCGAGATCGAMGCGGCMCACCCACRCCAGTAGCGCCGTCCCAGACGCGACGCCCCCGGCCAAGCCGGGGGCTTTGATATGTGATCCATACGAGATCCATTCGCGCGCGAACGGCGAGGTTCATCGCCCGTATCGGCCGTCGCGAAATGGCCTCCAATGCCCGAAGCTTCCGACCCTTTTTTCGGACGGTTTCTGACGCCCTTTAAAATCAACAACTTACAAACCATCGAAAAAAGAGGGTCTCAGACAGAGAAAAGCCTGTATTTCTTTTTCCTTCAATTGGTTATAGGTTTTCGGGGCTA # Right flank : CTTTCCCGCCCTACCCAATAC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 356-1045 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCYZ01000349.1 Pseudomonas aeruginosa strain 88 scaffold_348, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 356 28 100.0 32 ............................ TTGCGATCAAGGGGCTGCAACACGGCCTTGCG 416 28 100.0 32 ............................ AAGCTCACCGGCCCGGCGGAACTGCTCGCCGA 476 28 100.0 32 ............................ ACAAGTAACCCACCCGAACCCATCAGGAGAGC 536 28 100.0 32 ............................ CTGAACCCGATCCTTGAATGCGAGCTGCCGAT 596 28 100.0 32 ............................ TTGACAACATGGCGGTGCTGGCGGAAACCGTT 656 28 100.0 32 ............................ TTGGTCTCAATGATCATTTTCACGCGGCGGTC 716 28 100.0 33 ............................ AGAATAACGCCCACCACTTGTGACAGGTAACGG 777 28 100.0 32 ............................ AGAGGAAGCCGAATGCGCCCTTGGCGGTATCG 837 28 100.0 32 ............................ GTGCGAGTTAGAACGAGCAGCCCCATTGCAGG 897 28 100.0 32 ............................ ACGATGTTGAAGTAGCGCCGCTTCTGTTCTTC 957 28 100.0 32 ............................ TGTACTGCCTTGAGTTTGACTCTAGAGTGGGC 1017 28 82.1 0 ......................G.CTTC | C [1037] ========== ====== ====== ====== ============================ ================================= ================== 12 28 98.5 32 GTTCACTGCCGCATAGGCAGCTAAGAAA # Left flank : ACCCTCGCCTACATCAACGGCGCCTTGCTGAAGCTGGTCAGCGACGCCCTCTCCGAGATCGACGCGGCCCACCCACACCAGTAGCGCCCGGCCCAGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGAGAGGTGATCCCTTCGAGGCCCATTCGCACGCAAACGGCGAGGTCCGCCGCCCGTCCCGATCATCGCGAAATGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGGTTTCTTACGCCCTTGAAAATCAATAACTTACAAAGACATGAAAAAAGAGGGTTTCAGACCAGGAAAACCCGGTATTCCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : CCCTCGGACTCGCAAATGGACGCTGGAAGGCAAGAGACGATCACCGTGGAACGACTGGCAGACACTGCCGCCCACACCCGGCATTCCCCTGACGAAACGAATAGCCTGTCCGTTCCCGTAACGCCCCTGTCAACTTGCCCCGGTAAACCGGACCTTCGTGAAGCCTGCGGAGAACTCCGGAATGAGTGCAATGGACCTCAAGCGCCGCCGCGTCATGCAAGGCCTGGGCGCTGGGCTGCTGTTGCCGGCGCTGGGCGCGCCGGCGGTGATCGCCGCGCCGAATGCGCGGCCGAAGCTGACCGATGGCGTGCAGTCCGGTGACGTGCACGGCGACCGCGCGCTGGTCTGGAGCCGCACCGACCGTCCGGCACGGATGATCGTCGAGTGGGACACCCGCAGCGTCTTCAGCGAGCCGCGCCGGCTGGTCTCGCCGATCACCGACGAGCGTCTCGACTACACCGCGCGCATCGATCTGCGCGGTCTGCCGGCCGACCAGTCGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //