Array 1 15836-13673 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZCI010000184.1 Salmonella enterica isolate 4586_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15835 29 100.0 32 ............................. CTCGACACGCTGAATAAAACTAAATCAATGTG 15774 29 100.0 32 ............................. TCGTCACTAGTACGTGACCATATAGGCCGGAT 15713 29 100.0 32 ............................. AGTATTTACCCAGCGTGCAATCATGTTGAGGT 15652 29 100.0 32 ............................. AGATCGGCAGTGTCATAACAGCCCGCCACTTC 15591 29 100.0 32 ............................. ATCTTATTGTGAATCATCTGCCCTATGCCAGA 15530 29 100.0 32 ............................. CTGGGAGATAGCCAAAAAACTGGGTAACGGCA 15469 29 100.0 32 ............................. ACATTGACCTGTTGACCCGTAACGGAATCGAC 15408 29 100.0 32 ............................. CCGTTACGGTTGATACGCGCCAGGTCACTGTT 15347 29 100.0 32 ............................. CCGTGTGCGGTCTGTGCGCCGCCGTTGTTAAC 15286 29 100.0 32 ............................. CGTTGCAACTGGAGATCTTGCCCTGTATCGAT 15225 29 100.0 32 ............................. GTGGCTGGTTTCCGATTATTCGCGAGTCATAC 15164 29 100.0 32 ............................. GCTCTTGCGCGAGGTGTGCGCTCAGAGGCCCT 15103 29 100.0 32 ............................. ATACGGAATCTTATTTTTCTGTGTTATTTCAA 15042 29 100.0 32 ............................. CTGGCAATAAGCCGCACTTTTGATAACGACGT 14981 29 100.0 32 ............................. TTCAGGGAGGATTTACAGGCCCGGTCCCCACC 14920 29 100.0 32 ............................. TTCGTTGTTAATCCAGTCCTGCGCCTTGCGGT 14859 29 100.0 32 ............................. GCAGAAATTCGATATTTGCAACAGGTCGGCAG 14798 29 100.0 32 ............................. ATAATCGGGATACATTTTGTTGTCCGGGTGGC 14737 29 100.0 32 ............................. GGGCATTAACCTGTTGTTTTTATTACTGGTAA 14676 29 100.0 32 ............................. GTGAATCTGCTGGCGCAGATCAACCGGCAACG 14615 29 100.0 32 ............................. ACATGACGCGTGAGGTGCCGTTCCTGGTTGAA 14554 29 100.0 32 ............................. ACCGGACGACAAAAACCGAAAATGACAAACAC 14493 29 100.0 32 ............................. GAACGTTATCCGCAACAGCAGCCGCCACGTCA 14432 29 100.0 32 ............................. GCAAATTTCGACAGTGAGCAGGCTATTTCAGC 14371 29 100.0 32 ............................. CGATCTCCTGACGCTCCGCGACCAGTTCAAGC 14310 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 14249 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 14188 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 14127 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 14066 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 14005 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 13944 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 13883 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 13822 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 13761 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACT 13700 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGAGCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2635-4982 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZCI010000048.1 Salmonella enterica isolate 4586_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2635 29 96.6 32 .........................G... GGCGCTACAGTCTGAATGATCTCCACGCCTCC 2696 29 96.6 32 .........................G... TTTCCTGTAACATTCCGATATATAATTCTCCG 2757 29 96.6 32 .........................G... ATGACGACCTGATTTCAATTGACGCGCTGACT 2818 29 96.6 32 .........................G... TCGCGTGAGGACATTGCCCCTGACACCGGGCG 2879 29 96.6 32 .........................G... GGATCTACGGCTTTAAAATCGTGTTTGCCTCG 2940 29 96.6 32 .........................G... GCGATCTGCTGGTGCTGGGGGGTAATCAGTCC 3001 29 100.0 32 ............................. TAGTCCATAGCCTCAGCCCGGCTTGTCATCCT 3062 29 100.0 32 ............................. GGGAACAACACATCACCCCTCACCGAGGGCGG 3123 29 100.0 32 ............................. ATTACGAGACATTGTGGAAATCCATCTACGGC 3184 29 100.0 32 ............................. AGGCGTGCATCAATTGCTATAAAGCCGTAGTC 3245 29 100.0 32 ............................. ACTGGTTGAGAAGATCCGCCGCAGAATCAGCG 3306 29 100.0 32 ............................. ATCACATCACGCAGATATTATCTCATTACAGC 3367 29 100.0 32 ............................. CCCGTTCCACGGCGAGAAAACCCCGTCCTGCG 3428 29 100.0 32 ............................. GAGCACTCAGAAATTTGGCAACTGGACGCTGA 3489 29 100.0 32 ............................. GCTGAGGGTTCGGACGGCATAGGAATAGAGCA 3550 29 100.0 32 ............................. ACTCCAGCCCCACACGCGCTGGCCGCGCTAGT 3611 29 100.0 32 ............................. ACTCGCTAAAGTTGCGCTCAACGCAAACAGCC 3672 29 100.0 32 ............................. TTGGTGCCGCTCCAAGATTCACCGCGTTTATC 3733 29 100.0 32 ............................. ACGTTTTCCCACAATGAAATCGCGTTCGTAGT 3794 29 96.6 32 .............T............... GAGATCCGTTTGCCGCACTGGAGGCGGCGTTA 3855 29 96.6 32 .............T............... GCCCGCAATCGGATGCTGTCACGTGAGCGTGA 3916 29 96.6 32 .............T............... AGCCTGGGACTATCAGTTATGACCACGAAACC 3977 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 4038 29 100.0 32 ............................. GCCTGCGTGAAAAACAGGTTCATCAGGATGCC 4099 29 100.0 32 ............................. CTCCTTGAGCAGGGGAAACCCTGCCTTTTCCA 4160 29 100.0 32 ............................. GGCTGAGAAGATCGGCGGGCAAACTGCCTATG 4221 29 100.0 32 ............................. TTTATTCGCCGAAAGAGGGCGACATAGTTATT 4282 29 100.0 32 ............................. AGCCAGGCGTTATCTTCTGGCGTTCTTAGCGG 4343 29 100.0 32 ............................. GCACAATTACAGTTTGACGCGGTGCTGTCATT 4404 29 100.0 32 ............................. GTGACAACGGTCCCGGCGCTGGAAAAGGTGAA 4465 29 100.0 32 ............................. GGGGAGGGTGAATTTAACGAGCTGTATAAAGC 4526 29 100.0 32 ............................. CAAAAATGATTACTATAATCCCATGTTGAACA 4587 29 100.0 32 ............................. CTTCATCTCGCAGTACGTAAACGCCTGCATCA 4648 29 100.0 32 ............................. CTTCATCTCGCAGTACGTAAACGCCTGCATCA 4709 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 4770 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 4831 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 4892 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 4953 29 96.6 0 A............................ | A [4979] ========== ====== ====== ====== ============================= ================================ ================== 39 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTGCCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGTTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //