Array 1 7275-7636 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSLN01000020.1 Ammonifex thiophilus strain SR NODE_20_length_25090_cov_41.573489, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 7275 30 100.0 38 .............................. CGAGATAATGGCTATAGGCGCAGAGCAAGATGGGGAGG 7343 30 100.0 36 .............................. CAAGATCTGGGCGCCTGTATCCGCGCTCGTAGCACG 7409 30 100.0 36 .............................. GGAGATCGTAGCCCACCACCTCACCAGTACCACGAT 7475 30 100.0 36 .............................. GAGAGGTGCTGGTGCGCACCCGGCGCAGGACGTCCG 7541 30 100.0 36 .............................. ACAGTGGAGGAGGTTGAAGAGGTTGCGGCTGGTGGA 7607 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 6 30 100.0 37 CTCTCAACCCCACAATGGTGCGATTGGAAG # Left flank : ACCTCTCCAAAAACTCCGCCAGAGTGGGAACCACAGTATTCCCACCGTTAAGGACCTCTCTCCTCACGAACCCCTCCCCGTCCCGCCAGACCCACAGCTCCTTCGTGGCGTTGGGCGGCACGGGGAGCGCGGACAGCGCCCGCAGGTCGCCGGGCCTGACGCCGTCCCCGTCCTTGTGCCGCTTGACTTGAACCAGGCGCACCCTCTCCCCGCTCACGGCCACCAGGTCGAACGGCCCCTTGCTTCCCGCCGTGCGCAGCACCAGGTATCCTTCTCTCTCCAGCTCCTCCTTCGCCTTAAGCTCCGTCAGGTAGCCCCGCCTGTAGTTCCTAGTTGCCAGAATTTCACCTCCAAAAAGAAAGGATCCGGACGTAAAGCCGGACCCAAACTTTTGTCTCAATACTATATCTTTCCAAAGGTTCGGAGTTAACTAAAGCATTTCTTATAACAATGCAGCCGAAATGATAGCTACTTCGCACACCAACAGTGTCGAGCCAGCC # Right flank : GTAGATTCTCAAGACTCGGGAAGCCTTGATTTTTCTTACTCTTCCTTCTGCTCCAGCGCCCAACATATTGTCAACCTCCAGTAGCGCAAAAATCCCTGGAGGTCGACGACAGTATCTCATCCTCCTGAACCCGCACCAAAACTGGATTTGGAACAACTTACCAGTCGCCAAATGGCTCATGCACTTCCCTGCCTGCTCCGGTCGACGACAATTGTAATACGCCGCCGATAGACAGCACAAGTATCAGGTACAGAAGTGTACACTGCACAATACAGCTGCCTACCGCAGACTACCGGCTGTAACCGGACACAATGCGGAACATGCCGAACCCCTGGCTGTTCCTTTCCCCCAGTCCGGCCTCGTAAGCCAGCAAGAGTAACCTCCAGTTCCCTTCTGCCACGAAGCGCCCTTCGTAGCCTCTTACCTTAAGTCCCTGAACCTCCACGAGCCTGGAGCGCCAGTCCCCTACTCTTTCAAACCGGACTGTAGCCCCTGCCGGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTCAACCCCACAATGGTGCGATTGGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.90,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 9035-9865 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSLN01000016.1 Ammonifex thiophilus strain SR NODE_16_length_33307_cov_36.095027, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 9035 30 100.0 35 .............................. TTGCTGTGCTTCAATTACTACCGGAAAGCCCGATA 9100 30 100.0 36 .............................. TCCCCTTTCAACGGACTCCCACGCTTCCTCCAGCGC 9166 30 100.0 36 .............................. TACAGTACGGGGATCTTGTAAGGGCTCTTGGTAAGG 9232 30 100.0 38 .............................. CAGCAGGTGCGGCGGGTTCTGTAGGCGGAGGGTGTTCG 9300 30 100.0 35 .............................. TCGGAAGCGAACAGTACGGATGGGAGCCGCCGAGA 9365 30 100.0 37 .............................. CTGGGTTAAACCTCTCGCACGCCGAGCCGCCCGGAGG 9432 30 100.0 38 .............................. CGGGTTGCAACCCGGGAGGGTCTTTCTCAGGTATTAGA 9500 30 100.0 38 .............................. AGCTCTTCGACCATCCCGGCCAAATCTCCCCTATTCCG 9568 30 100.0 36 .............................. GGATGTTCGGATGCTTGACAGGCAGATTAGGAACTG 9634 30 100.0 38 .............................. AGTCTGATTTGCGTGGGAGTAGTGAGTTAGCCGACGCC 9702 30 100.0 37 .............................. AGATTTATGTAGGTGCGCCTGGATCGGGAAAGTCATA 9769 30 100.0 37 .............................. TCAGTCTAGCGCCACGACCCGGTACCTCCTGACCACG 9836 30 96.7 0 .............................G | ========== ====== ====== ====== ============================== ====================================== ================== 13 30 99.7 37 GTAGCAATCGAACCATTGTGGGATTGAAAC # Left flank : CCTTTCCTGAAATAGACCCTCTCCGCAAAAAGTCCCTGGCAGAAGTTCCGAGGACCTTCCTACCCGTTGCAAGCGTACGCCGTAGGAAGAGGTCGGGATGCTTCGAAGCCAGAATCTACAGGATGGGAGGCGGTAGAGAGGAGTTAACGGAAAGCCGCCGGTGGCCAGGAGCCGGAGTAATTCTTTGTCTCGTTCCGAAAAACGCCGAAAATGAAGGGAAGCGGCTGTTTCTTGCAGCGAGCGTTGACAAATCCGAGGTTTGCTCTTTCTGCCGCTGCCGTGTTATAATTGCCGTCGACCTGGGTGGTTAAAGGGTGCTGGGAGCCACCTGCTGTTTGGAAGATTATAACAGATCCAGTAGTGATGCGGGTTTCGGGGATCGAGAGCTGCCGTCGACTCCCTGGGGTTTTGGGGTTAACCGAAGGTCGACGGCAGTTTGAAGTAAGTGGCAGGAGCTCGGAGCGAGAAAAATCAAGGCCTCCCGCCCCCAAACGGGCTTG # Right flank : GTCATAAGCGCATTGCGTCCAAGCCAAGATACGCTATGCACTATTTGCTGCTCTCAAGAGCTCCTGCTGCTCGCCTTCTTCCCCACTCCATTTCTCTGCAGACCCTGGGGGTTCGGAATACGGCCCGGACGCCGCTTGCAGAACGGGCTCCCAACCTGGCCACTGCCTTAGCTTACGAGACCCGCGTCAAGCTCAAAATGGAAGTTTGGCCGCCTTACCTCTGGCGACTCACGGGCGTAGCCTGTGGCGACCATTTTTTCGGCTAGGATCAAGCCCGTCAAACTTCGCACTCAGGTGCAAGGAAAAAGGACCTTCTGTGGAGAATAAGACCGGAAGCTGGCTTGCGCGTAAATACCAGTTTCTCTCGTAGCCTCGGTTTGAAGGAGGAAGAAGACAAATGGATCTGCTGGAAGTAGTTTCTGCGGCAGTAGCCGAGGGAAAAAGGGCGGGAGCGGAAGAGGTCGAAGCCTTTGCGGTTACTGGTACCGCTTTGCAGATAG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCAATCGAACCATTGTGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 2 17354-21449 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSLN01000016.1 Ammonifex thiophilus strain SR NODE_16_length_33307_cov_36.095027, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 17354 30 100.0 36 .............................. GGTTTTTACTGGCGGTGTTGGTTCGGGGAAAAGTTA 17420 30 100.0 36 .............................. CCCGGCTGGAAGAGTAGAAGCTCCACAGCCGGAACA 17486 30 100.0 37 .............................. GTGGTCGCTCAGTAGGCGACTGCGTAGGTTTCTTCTG 17553 30 100.0 36 .............................. TGCAGGAGCAGTTTGATGCTTTACTTAATACGGTTG 17619 30 100.0 36 .............................. TAGTATTGTAGCGCCTCGCAACCCAAGGCAAGAAAA 17685 30 100.0 36 .............................. TGACTACTCTGCGTAATTGGTGCGATAGATACAGGA 17751 30 100.0 37 .............................. TACGAAGGTTATACGGAGGTGGCGTGTAGTGTTAGAT 17818 30 100.0 36 .............................. CTGTGGAGGGTTTGGAGCGGGCTAAGATGGCCTACT 17884 30 100.0 36 .............................. CCTTCTCTATCCTGGTGGAGCCATGCGGCCACCAAC 17950 30 100.0 36 .............................. TGACTACTCTGCGTAATTGGTGCGATAGATACAGGA 18016 30 100.0 36 .............................. TGACTACTCTGCGTAATTGGTGCGATAGATACAGGA 18082 30 100.0 35 .............................. GCTATGATGTAGTACTTATTACGCAGGATGTTAGA 18147 30 100.0 38 .............................. GGATGAGCTTATCCGGCTTTTCGAGTCGGAGCTGGTAG 18215 30 100.0 36 .............................. ACTCTTCCAAAGCTTTATCCGGATCCTTCTTAGTAT 18281 30 100.0 36 .............................. ACAACCCACGAGAGAAGCTTATCCAGCATCACACAC 18347 30 100.0 36 .............................. TGTAGCAAAACCTTTCGCTGTCAATCTCGCTAGTCT 18413 30 100.0 37 .............................. TCCAGTTGCTGAATGTTCCTCAAAAGCCTCCCATTTT 18480 30 100.0 35 .............................. CCGAGTTCCAGCCGATACCCGACCTCCCGGGCTAT 18545 30 100.0 36 .............................. ATATAATCCGGAACCGCCTCGGGAACACCGTCCCTA 18611 30 100.0 38 .............................. AAACTTCCTCCGAAACTTTAAAAAGCTTCATAGTGTTG 18679 30 100.0 37 .............................. ACAAACCAATCACGACTGTTGAACCATATTCCTGCCT 18746 30 100.0 37 .............................. TCCTGAAAGATGCCAGAACATGCGGTGTTTCAGAGAA 18813 30 100.0 37 .............................. AGCGAAACCCACGGCACGGCACTCAGCGTGAGCCTGG 18880 30 100.0 37 .............................. GGTATTCTTCACGCCCGAGGCGTACTACAAGCAGAAG 18947 30 100.0 37 .............................. CCCTGTCCTGCCGTAATGCACTCAGGCGCAGTGGGGT 19014 30 100.0 37 .............................. TACGACGTTTTAGGCGCAAAAAGCAAAACCCGTACCC 19081 30 100.0 36 .............................. CCGAGAGCATAAGAAAAGTACCCTGGGGAGCCAGAT 19147 30 100.0 38 .............................. AAAGCCGCCTATTTTTGATGTTACCTTGCCTAGCGTGT 19215 30 100.0 37 .............................. GGTGGCATAGCTGGTAACTATGCTGTTCATTATTTTA 19282 30 100.0 36 .............................. CCAGGTATCTGGGAATGCCAGGGAACTGGAAACGCC 19348 30 100.0 38 .............................. AAGACGCAGTGGGACTAGCAAAAGCGAGCCAGTTGCCT 19416 30 100.0 37 .............................. CATCCTCCAACCGCTACCACCCCTAAGCCTCACACAA 19483 30 100.0 36 .............................. CCACCCAGCCAGGTAAGCCGGTGGTAAAGGTCACCG 19549 30 100.0 37 .............................. CCAGCTATGCCACCCAAAAAGCTAGCAAGACTAACAG 19616 30 100.0 36 .............................. CCTGGCGGGGCTGTGCCCGCTCCCGCCGGGTTTCGA 19682 30 100.0 37 .............................. ACAAAGTATGCGTAGGGAATCCGGGCGGTAAGTATGT 19749 30 100.0 39 .............................. CCAGAACAGACAAACACGCGCTGGAGGAAGCCTTGTACC 19818 30 100.0 38 .............................. ACTGCAAACAGATAAGGGCCGGGATCACTCCCGGCCCG 19886 30 100.0 36 .............................. GATACTTGCGGAGGTAGCCCCAGACGCTTTTCTTTA 19952 30 100.0 36 .............................. CGTGGTAGTGCTTGACAGCGAATGATGTGCTCAGTA 20018 30 100.0 37 .............................. GCCAACCCGGAAAGACGCTCAAGCGGAAGAGCTGGTA 20085 30 100.0 38 .............................. CCCCGGATGGGCGGTGGGAGCGGTCCGCCGCCGGGCGG 20153 30 100.0 37 .............................. CCCTCCCGGGGCAGAGAACTCCTGCCCGGAGTTCCGT 20220 30 100.0 36 .............................. GGACTTGTGGGAGAAAGTGAAGCAGGTGTGCATGAG 20286 30 100.0 34 .............................. GTAAGGATATGGTGGAAGGACATACCGCTTGCTT 20350 30 100.0 37 .............................. GCGATTAGCGCCTGGGTTGGGTATGGGGAACTGTTTG 20417 30 100.0 37 .............................. ACAGGAGTGTTGCGGCTGTGGTAGTATAAAAGTGAAG 20484 30 100.0 36 .............................. GAGACAATGGCGAGGGACATGGTGGCCAGCGGTATG 20550 30 100.0 37 .............................. AACGCTATGTATAAGCAGCTAACGCAGGTAAAGATGA 20617 30 100.0 37 .............................. AGATCTTTAGGAAGCTCACCGGGCGGGCTTAGCCCGG 20684 30 100.0 37 .............................. ACACAAAGAACCCGACAGGTGGAGCTAACAGCAGCAC 20751 30 100.0 38 .............................. ACATCATAGTGATAACCGATACCTTCAAAAAACGGACG 20819 30 100.0 36 .............................. CGCACCGGAACTCCAGCCGCTCCTGGAGGTCCGCCC 20885 30 100.0 38 .............................. TCCCCTTTTAGAGACGCGAAGGGCGCGGGCACCGCCTG 20953 30 100.0 37 .............................. AGTTCATCCCTTGCCCAGGTGCAGGAAGCCCGGGCTA 21020 30 100.0 36 .............................. GTCCTACGCGCCTGGAGAAGTTCCACACCTGCCCCC 21086 30 100.0 37 .............................. GCAGCCACACCCTGGGCACCTTCTTCGCCAGAGTGTG 21153 30 100.0 37 .............................. CCACCTGCAACCCCTGGGGGGCCACAGGAGCAGGCGG 21220 30 100.0 36 .............................. AATGCTGGCCTGGACCAGGAGGGTTTTAGAAAGGCT 21286 30 100.0 37 .............................. AGGCTACAGGCGCTCAGGATGTTGGATATGCTTTGAA 21353 30 100.0 37 .............................. CGGCTTAAGAAGCCTTCTTCCACGGCCTGCTGGAGGG 21420 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 62 30 100.0 37 GTTTGTAGCCTACCTATGAGGGATTGAAAC # Left flank : CCTGGTCTACGACGTTAATGTAGCGCGGGTGGCCAAGGTTTTAAAGATAGCCCGCAAGTATCTACACTGGGTACAGAATTCTGTCCTCGAAGGGGAACTGACCGAAGCTACCTTCCGAAAGCTTAAGCACGAGCTCAGGCAGGTAATCGATGTGAAAGAAGACTCGGTGCTCTTATACGTTTTGGGAAACCAACGCTATACTACTCGTGAACTCCTGGGGGTAAAGAAGGGTGGAGAAGAATGGATCTGGTAAACCTCCTTCCACTATTGAAAGGGCGGGCTTTCCTAGTGGCTCCTCGTAAAGAGAAGTGTCGTCGACCGTCGGTAGTGCAAAAACCCCTGGAGATCGACGACACTACTTAAGTTTTTTAAATATTGACTTGAAAGCCCACAGTGTGGTAGTATTGAACCACCAGATAATCTGGTGAGCTTCCGGCGAATGGTCGTTCGCAGGGCCAGTGACCGATCTTGGAAAGCCAGAATTCACGCCCGCAAAACGG # Right flank : CCTGTATGTGGCTCCGGGACTCAAGCGTGAGCTGAAGGAAGAAAAGAGCGAGTGGAAGAAGAGGGCTATAAAGAAGCGGTTAAAAGAGGTGCGTAGCGAACTGAAGGCTCTTCGAAGACACCTGCAAACTCTCCAAAGCGGAGAGAGTGAGCCCGCTTCCCGACAGCCGGTCTACCGACGGAAGGAGCCGGTGAGGGGCCGCCCTCTGGGGTGGCGAAGAAAAGCTTGGCGAGTCCTCTCCGCAGCCCTCACCGTCCCGTATCTTGAAAAGCTCCCTCAGGTAAGAGGTATGCCGAGGGAGCTTTTCTCCCTTGAAGACTGTTTTGGTGGCGGGGAACCGCCGAAGGCGGGTGGTGAGAAGGCCAGTTCCTGTTCCTGGTGCAGGGACGGCTGTATGAAAGTGACATACACACTTTTGTACAGTTTCTCAAACCAGGACGCCACCTGATATCAATTTCTCTAAAGCCCGTTTTTCCAGCCGGGAAACATAGCTGCGGGAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: F [matched GTTTGTAGGGTACCTATGAGGGATCGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 46710-43883 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSLN01000004.1 Ammonifex thiophilus strain SR NODE_4_length_123505_cov_33.545883, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 46709 30 100.0 36 .............................. GCTATGATGTAGTACTTATTACGCAGGATGTTAGAA 46643 30 100.0 36 .............................. ATAGGCAGATTAGAAATTGTGCTGAGTATGTAGTAA 46577 30 100.0 37 .............................. AAACGATTTATATGCCGGGTTTGCGGGTGTACAAAGG 46510 30 100.0 38 .............................. TGCTCTCTTAGTTATAGACGAGGCAGGGATATGGTTTA 46442 30 100.0 38 .............................. TACTGGCAGGGGGGGGCTTTCCGGGGTACGCCTACCGT 46374 30 100.0 36 .............................. GGTGTAGCACTGTCCCACCAAAACCACCTTTCTCCC 46308 30 100.0 36 .............................. CTGGGTAGCGGTGGATCTGGGGACTGGTGAGATCCT 46242 30 100.0 36 .............................. GATACTTGCGGAGGTAGCCCCAGACGCTTTTCTTTA 46176 30 100.0 36 .............................. CCCGCCACCAGAAGCCAGTCCTCTAGCTCCAAAAAC 46110 30 100.0 37 .............................. GTGTCCCACGTCACTATCCTCACGGTACTAACCCCCT 46043 30 100.0 37 .............................. CAAATTTTACACATACAAAAAAACACTGGGAACGGCG 45976 30 100.0 35 .............................. TGGCCATGGGCCTTGCGAAAGGGTGGCGTTCGGGT 45911 30 100.0 36 .............................. CCAGCGCCCGCCGAAGAGCATGATAACTCTTGCCAG 45845 30 100.0 37 .............................. CCAACAACCCCATGTTCGTGGCCGATATTGATGCCAG 45778 30 100.0 37 .............................. CTTAGGGCTTCCGCTCTCCCCAGTACCCCCAGGACAG 45711 30 100.0 36 .............................. AGTAGGCAGGCAATGGCACGCAGGGGGGCTTTGACT 45645 30 100.0 37 .............................. GCTTTTCAAAGAATCCCAGCACGTGCTTGTGGTACTT 45578 30 100.0 36 .............................. AGTTTAAAGAGGGCATTTTTGAGACGGAAGACGCGG 45512 30 100.0 36 .............................. CTGTTTAAGAAAAACACATATATGCGGCTCGCTTCG 45446 30 100.0 37 .............................. ATGCCTACCAGCGGCTGTCTGTCGATGGCTTTTGTGG 45379 30 96.7 38 C............................. ATGAGTTCCCGCAAAGACATCGGATCCACCTTCACTGT 45311 30 100.0 36 .............................. ACATTTGTCTTGCCCAGGTTACCAAGTTCCAGCCGA 45245 30 100.0 36 .............................. TTCTCCGAGAGCGCCCGCACCAGCGTCCTGAGGTGC 45179 30 100.0 36 .............................. ACATATGCTGGATAAACAATAAGACGACTACCATTA 45113 30 100.0 37 .............................. AGGGTAGTGGATGATCATGTATTTGTTGTTCCCGTCG 45046 30 100.0 35 .............................. AGGCGTGCTTCTAGGGCCTTCCCGGCGGGCCCGCA 44981 30 100.0 37 .............................. CGGATGAACTGGACGGCGGCCGGGTGCCTGCTAACGA 44914 30 100.0 36 .............................. AGGAAAGGTGCAGGATAGCTAATGAAGCGAATGCGA 44848 30 100.0 36 .............................. TCTATCTGCACGGTCACATTCCCCCTAGATGATATT 44782 30 100.0 38 .............................. ATGACGGGAACCACCTGGTCGGCGAAGGCCCGTGTGAG 44714 30 100.0 34 .............................. GCTAGGCTAGCTCGGCTGCTTTGCCTGTGTATAA 44650 30 100.0 37 .............................. TTTTTTACTGTGGGTATACGGTTTCCAAGGGGTTTCA 44583 30 100.0 37 .............................. CTGAAGCTGGCGCTTCCCCTCGGCCACTGTATGAGTT 44516 30 100.0 37 .............................. CTAAAGCTTTCCGGAGAGCATGATAGCTCTTTCCCGA 44449 30 100.0 37 .............................. GGGGCAAGAAGGAGCGTGATCCTAACTTCTTCGAGGT 44382 30 100.0 37 .............................. CGGAAGGCTCCTGATGTCGTGAATTATGAGGTAGCTG 44315 30 100.0 36 .............................. AACCACACCTCTGGCCTTTCCCCATATTGGGCAATG 44249 30 100.0 38 .............................. AGGGAGGGGGGTAGTTTGGAGAGGGCTATTCGTGCGGA 44181 30 100.0 37 .............................. GGTGTTTCGTAGAAGTGCGCGCCTGCCCCTCCCAGAA 44114 30 100.0 37 .............................. GGTGTTTCGTAGAAGTGCGCGCCTGCCCCTCCCAGAA 44047 30 100.0 37 .............................. ACTTCTTACGCACGTACCCCGACATGCTCCTCGTCCC 43980 30 100.0 36 .............................. GCCGAGGTGGCCGGGGTGCTGAGGGCGTGCGGCCAG 43914 29 83.3 0 ....................T.-....CTT | ATA [43891] ========== ====== ====== ====== ============================== ====================================== ================== 43 30 99.5 37 GTTTGTAGCCTACCTATGAGGGATTGAAAC # Left flank : CGCCGCGCGGGCAAAAACTTCGTGGTGGCCGAGGTCAAAAAGAGCTCCCGCGCCGCCGAAGCAGCCCGGATGCAACTGGCCTTTTACCTTTACGAACTCAAGCAGATGGGCCTAGAGGCCGAAGGGGAGCTCCTTTTTCCGGAAGAGAGGAGAAAGGAGTATCTAGTGCTGACGCCGGAGCTGGAAGCAAAAGTAGCCAAGATGAAGGAAAATATAGTCCAGATCATAGCTCGCCCGATTCCTCCTGCCCCGGCGCGCACTCGCTTCTGCGGTAAGTGCGCCTACGCCGAATTTTGCTGGGCATGAAAATGTCGTCGACCTCCGGTAGTGCAAAAACCCCTGGAGGTCGACGACACTACTTAAATCTTTTAAATATTGACCTGAAAGCCTACAGTGTGGTAGCATTAGGCTGACCGATAATCCGGCAAGCTCCCGGCGAATGGTCATTCGCGAGTTCGATAACCTAGCTTTCAAAGCCGGAGTTCGTGCATACAAAACGG # Right flank : TCTTTTGGAGGGGTTCTTGTGTCGTACGCGATGGTCTGTTTGGTCAGCGAGGAAAGGATGCAGAACATTATTCCTGTGTTCCAGCATGGTTTAAATATTAGCAAGGTCTACCTGATATGTTCTCGCGATGCCGGACAAGAAAATTCGCCCTTGCGGAGAGCTCTGGATGATCTCCAAGCTACCTTAGAATCAGAAGCCGGCGTCAAGGTTAGAGTGTGGGATCAGTTCGTCGATGCTTACGACCCGGAAAGTGCTCGTCGAGTTGTATACGAGGCGATAAAGGACGCGCAGAAGAGAACTTCTGCTCAAGTGCTAGTTAATTTCACCGGAGGTACTAAGTGCATGTCTGTCGGAGCCTTCTTAGCCGCCCAAGATGCCGGCCTCCCCTGTCTTTACGTGGATACTGCCAACCTCCGCCTTATCCGATATGATCCCGTATCTTTATCTCAGGAATCTCTTCCTTTTGATTTGGCGGGCCGTCTCACCGTTCCCATCTACTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: R [matched GTTTGTAGGGTACCTATGAGGGATCGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 33466-32769 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSLN01000003.1 Ammonifex thiophilus strain SR NODE_3_length_190655_cov_33.150156, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 33465 30 100.0 36 .............................. GCGTGGAAGTGGCATTGCTGTCCCCCCTCTCTTGCG 33399 30 100.0 37 .............................. AAGGGAGAACGCAACGTTCTCCCTTCTTGAGTTTCTT 33332 30 100.0 36 .............................. TTTAGCTTGCCGTGGGATTTTGTGCATCTTGTTAAG 33266 30 100.0 37 .............................. TTGGTGGCAGAACTAATGTTGACACCCTGCACCTGGA 33199 30 100.0 36 .............................. GGGTACGGCTGGCGCGTGGTGGTGCTGGACAGGTAT 33133 30 100.0 37 .............................. TGAGGCTTGTCGGCTGGGCGGCGGCCAACTTTCCCCA 33066 30 100.0 36 .............................. TTTAAGCCATGTATAGTTCCTTAACTTCACATGCTT 33000 30 100.0 39 .............................. TCCTGCGTGTAGCGGAGAGAGGGATCGTTCGCCAACCGA 32931 30 100.0 37 .............................. AAGCTTAACATGCTTTACTATGTATTCGGCGCAATTT 32864 30 100.0 36 .............................. AGGCGTTCGGGCCCATGTCCACCGCCGTGTCGAAGG 32798 30 96.7 0 .............................C | ========== ====== ====== ====== ============================== ======================================= ================== 11 30 99.7 37 GTAGCAATCGAACCATTATGGGATTGAAAT # Left flank : CTAATTTCCCCTTTCGAGTGGGTCAGATCACCGGGGGGCTTTTAAGGATGTATCTGACGGTGGAGGATGCCCCGGCAGCTTATGTGGTCAAGATCTGGCCGGAGGAGCCCTCCGGCGTGTTGGCGCCGGTCCCCAAAATCCCCTCTCGGTTTCTCAAAGGCTGGCTAGGAACAGAAGTAATTCTTTGTTATCGTCTAGAAAAGCGCCGAAAACAGCGATAAGTGGCTGCTTTTTGCGGTAAGTACCGGCAAATCTGGAGTTTGCTCTGCCTGCCGCCGCCGTGTTATAATTGCCGTCGACCTGGGTGGTTGAAGGGCGCTGGGGCCACCTGCTTTTTGAAAGATTATAACAGATCCAGTAGTGATGCGGGCTTCGGGGATCGAGAGCTGCCGTCGACCCCCTGGGGTTTTGGGGTTAACCGAAGGTCGACGGCAATCTGGAGAAGGTGGCAGGAGCTCGGAGCGAGAAAAATCAAGGCCTCCCGCCCCCAAACGGGTTTG # Right flank : GTTGACATAACGTTTATCATGTGGGCTTCGGGATAGTGCTTGCCCGGCTGAAAAGCCGAGTTTTTCTTTTTAGGGAGCTGATAGGGGGAAGAAGGCTCTGGCAGGATAGAGGAACCGAGTTTTTTATGCCGAAAGTTTCTACTTGTAGCTTTGTTTTTGCCTTCCAGGCAGATTTGACACGGTCAGAAAAATATGTTTTCAGCCATTTCACATCGAAAACTGCCTGGGGAGGTGGGTAGTGGTGCCCCGGCACTACCTGATACCGGCGCTCCTTCTGGTGTTCTGTTTTGCGCCCTTGCTCCTCTTAAAAGTTCCTGCCTGCAATGCTTATTCCGTCACCCGCACCGTTTACCGGGACGAAATCTCCCCTACTTCGAGGCTCAATTTCTCCGTAGGGCGGGAAGTTTACCTGGACCTTCACCAGGGTTGCTTTCCGCGCGGAATTGAAAAACTCACCTTCACCGTCACCTCCCTTTCCGGCATCCCCGGCGTATCCTTCG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCAATCGAACCATTATGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 46989-46160 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSLN01000003.1 Ammonifex thiophilus strain SR NODE_3_length_190655_cov_33.150156, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 46988 30 100.0 36 .............................. ACATACTAACACCTCCCTTTGCTTTTAGGAGAACCT 46922 30 100.0 37 .............................. TTTTTTCGTTGCAAAAGGAGGTGGACCGGTGCGGGCC 46855 30 100.0 36 .............................. ACACTTTCTTAACATCCACTCTTATCACCCCCTAAA 46789 30 100.0 36 .............................. CGGGCCAGGGCCGCCTGGGGGACCTCCTCCACGGAG 46723 30 100.0 36 .............................. GTGCCCGGGCCTGTCCCAGACGCCCTCGTCCCGCAA 46657 30 100.0 36 .............................. TTTTCTTTCTTGGAGGTGGGTTGCAGTGTCTAGGAG 46591 30 100.0 36 .............................. TCAGGGCGCTGGGGAGGGCGGAAAGCCCTCGAAATT 46525 30 100.0 38 .............................. GTATGGAGAGCTGTTTGTAGTCCCGTTTCCCAATTGCC 46457 30 100.0 36 .............................. TAAAAAGCTTCATAGTGTTATAACGCTTTCCAACCC 46391 30 100.0 36 .............................. TTTGGCAGACGAGAGGAGGGTACTCTACGATAAGTT 46325 30 100.0 36 .............................. ACGGCAGCGAAAGCAGGAGCAGCAAGAGCAAGAGAA 46259 30 100.0 40 .............................. CCGCCAGCAGCCTCACCAGCTTCTCCGCCACCTGCTGCCG 46189 30 96.7 0 .............................C | ========== ====== ====== ====== ============================== ======================================== ================== 13 30 99.7 37 GTACCAATCGAACCATTGTGGGATTGAAAG # Left flank : AAGTGAGGCCGCCCGCTCGCGATGACTGCAGCCTAGACTTTAGAAGGCGTGATTTTTGCAAACCCAGGTAACGGTAACCTCGCCGCGGTGTTTCTGTGGCTCGCAAAGCGGGTGTCCTCAGCGGGTGACAGGTTGCGGGTTAGGGAAGCAGAGTGTCTTGGTTTTTGGAACTGGAGCAATTTTTCGTCTCCTCTAGAAAAGCGCCGAAAACAGCGATGGATAGCTACTTTTTTGCGGTAAGTACCGGTAAATCTGGAGTTTGCTTTGTCTGCTGCCGCCGTGTTATAATTGCCGTCGACCTGGGTGGTCAAAGGGCATTGAAGGCCGCCTGCCGTTTGGAAGATTATAACAGATCCAGTAGTGATGCGGGTTTCGGGGATCGGGAGTTGCCGTCGACCCCCTGGGGTTTTGGGGTTAACCGAAGGTCGACGGCAGTCCAGGGTGGGAGGCAAAGGCGGGAAGTAAGGAAAATCAAGGCTTTTTGAGCCCCGATAGGCTTG # Right flank : AAACGTCTACGGTGCCTAGCCGATTATTTCTGTGCCCGCAGGAAGGATTTCCAAATAGAAGGCCGGACCTGGTCTAGCTTTCTGAACTTGGCCGCCTTATCCCAGCGACTCACGGGCGGAACCTGTGGCGGCCATCTTTCGGTCACCTTCTAATGGCGCTTGGAGGCAAACTTACCTCTTTTTCCCTTATGGCGAAGCCGCTTCTGGGGCTCACTTTTAACGCCCGAGGGTCGGATGTATTGAGTAGTTGGGTGCTCCTCAAAATAGCTTTGACCTTAATCCCTTGGCTTGTAGCCGGATGGGCAGGAGGCTACTTCTTCTTTCGCCACCGCCCGCTCTGAGTTGCAGAGGGCCATCAGCTGCCCACTTTCCTTGCAAGATTTCGCTTCAGACGAAGCACACTAAAGGTGCAGGAAAAACCGGGGGTGTAAGTTTTTATGCAGTGTCCGGTTTGCGGCGGCAAGGCGGTGGGGAAGATAGGAGCGGGTCACTATTTCTGT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACCAATCGAACCATTGTGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 40758-41717 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSLN01000007.1 Ammonifex thiophilus strain SR NODE_7_length_80011_cov_35.347904, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 40758 30 100.0 38 .............................. AGCGATCGAAGCGATAAAGGAGCGCTTTCCGGTCGAAG 40826 30 100.0 37 .............................. AGCGGCTACGAATGACCACCACCTCCTTTTGGAAGGC 40893 30 100.0 36 .............................. TCCACCCGGATGTTCTGTGTCCCTTTAGGCCAGTTG 40959 30 100.0 36 .............................. GGACGCGGCCGCCCTGGCTGCGTGCAAGCAGGCCAC 41025 30 100.0 35 .............................. CGCGCATAGCGTCCAACACCTCTTGGGGCTTGAGC 41090 30 100.0 35 .............................. TAGAAAGGGGAGGGCGTAGGCAATGGTGGAAGAGA 41155 30 100.0 37 .............................. CTTTTTCAACCAACCCTTGATTTCGCTTGCAATCCAC 41222 30 100.0 35 .............................. ATTTCTCTACGGTCTACACGTATAGTGCCGTTATA 41287 30 100.0 38 .............................. CCTGGTGGTGGAGCTGGAGCCGGGCGTTACGGTGACTG 41355 30 100.0 36 .............................. CCTGCTTTAGGGCGCCGTTTAGGACGCGGTGGACGC 41421 30 100.0 36 .............................. GCGGCTGGCTGAAGAAGGTTTCGGGGGGCAGGATGT 41487 30 100.0 38 .............................. TTTCCAGCTCCGGGTCTTCCGCTCGCTGGACCTCTAGG 41555 30 100.0 37 .............................. TTTCGCCATTAAGCCTAACAGCTCATAAGCAGAAAGA 41622 30 100.0 36 .............................. TGATGGAGGATACTCCCCAGGCATGGCGCGCATATG 41688 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 15 30 100.0 36 GTAGCAATCGAACCATTGTGGGATTGAAAG # Left flank : CTGGGCTATGGCTTGATGTCTGTGAGCGTTATCGAGCTCCGGTAGCATGGTGACCTTGATCTCCGTGCCGAAAAGCGCGCCGTTAGTACGCCGGGGTGGAGGTGCATATGCTGGCGGCAGACTAACCGGAACAAAGGCCCTTACTCTCAGTGTGCCTGCGAGGGTTAAGAGTTAGCGCAATTCCGTACTTTGTCTAGAAAGATGCAGTAAATAAGAGTGGGTGGCCATTTTTTGCGGTTTACACCAGCAAATCTGGGGTTTGCTCTGTCTGCTGCCGCCATGTTATAATTGCCGTCGACCTGGGCGGTTAAAGGGCGCTGGGAGCTACCTGCTGTTTGGAAGATTATAACAGATCCAGTGCTGGCGCGGGTTTCGGGAATCGGGAGTTGCCGTCGACCCCCTGGGGTTTTGGGGTTAACCGAAGGTCGACGGCAATCTGGAGAAGGTGGCAGGAGCTCGGAGCGAGAAAAATCAAGGCCTCCCGCCCCCAAACATGCTTC # Right flank : GAGTGTGGGATTGAAACGAAAAGGGGAAATCGGTTCGTTGAGATCCGGAGTGGCATCCGGTCTTTTTATTTTTTGCTCATCGTGAAAGGTGTTGCGGGCGGGAGCTGGGCACTTCGTTCGCGCCAGGCACCTAGTTTTCTCTTGGAGCTTGCGCCAGGGGAGCTGGGAAATATCTTGAAAGGAAAGAATCAGGCCTGTTGAGATAGGGATCCCCTTATGCAGCTTATAAGGGAGGGGAACCTTCTTCGGTCCGGGGAATACTACAACTACTTCGAAGCGGGTACTGGGGGCGAGCCGGAGCAGGGAAGCTTACCTTGCACCAGGGGTGCTCGTCTCTGAGGGAGAAAAGGAAGGAGGTTTTAGAGCCTTGACCGAAGGAATAGACCTGGAGCGCTTTCGTCGGCGCTTGCTCCAGGAGAAAGAAGAGCTGGAGGAAAGGGCCCATAGTGAGCGCCAATCAATGCGCGAAGCTACAGGGGAGCTATCTCTGGCCGACAACC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCAATCGAACCATTGTGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA //