Array 1 12684-15228 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNUJ010000040.1 Lactobacillus delbrueckii subsp. lactis strain CIRM BIA 225 CIRM_BIA225-i1-1_scf40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 12684 36 100.0 30 .................................... AAAGGAGCAGCATGACATCACTGGCAGTAG 12750 36 100.0 30 .................................... TATAGAGTGTCCAAAGTGGACGAAAATGTC 12816 36 100.0 30 .................................... TCGCCGTAAGAATTTTTGTGGGTGACTTGC 12882 36 100.0 30 .................................... GGCAACTAGCGGTTGACGACTTCAACAAAT 12948 36 100.0 30 .................................... ACTCCGTTTAAATGGAAAAAAGCTACCGCT 13014 36 100.0 30 .................................... GCGCCTTTTACTCCACGAGCGACATCCATT 13080 36 100.0 30 .................................... AAACTGGCGTAGATAGCCCCAGAGTCAAGC 13146 36 100.0 30 .................................... TTTCCAGGTCTATGGTGGTATCGGCTTGGG 13212 36 100.0 30 .................................... GCCAAAGCATTTCCGCGGATGACGAAGCTA 13278 36 100.0 30 .................................... ATGAGCTTTGAAATCCGGGGCTTAGACCGT 13344 36 100.0 31 .................................... CAGGAGGTAAAATTATGCCATTATCACAAGC 13411 36 100.0 30 .................................... GATAGAGCCAGAACTTGCACCAGCCAGTAT 13477 36 100.0 30 .................................... TTGAGTCTGGAAAACAGCCTAGAGATGTTA 13543 36 100.0 30 .................................... CCCTTAACTGGAGATTCTTGTTCAATCACT 13609 36 100.0 30 .................................... CAGGCAGCCGTTACAAAGATGTTGCTGGAA 13675 36 100.0 30 .................................... CGGTCCGCTGAACCGTAGCCGCTAGCACCA 13741 36 100.0 30 .................................... TGAAGTTTGCCGGCTTTGACACGTCAGAAA 13807 36 100.0 30 .................................... CCTGTGCCTTGGTTTCTACCGCCCAATCCA 13873 36 100.0 30 .................................... ACAGCCAAATCACCGCTAACCAGCTTATTA 13939 36 100.0 30 .................................... CTATTTCATCCGCTACAAGTGAGCAAGAAA 14005 36 100.0 30 .................................... CTGGTCGGTGATCCAGCCTGCAACTACATC 14071 36 100.0 30 .................................... CAAGACAAAAGTACTATTATAGTAATGTAA 14137 36 100.0 30 .................................... CAATTAAGACAGTCAAGCGAAAGACAGCAA 14203 36 100.0 30 .................................... ACGGCCCACTATTTTGTTTTGGCTGTTGTC 14269 36 100.0 30 .................................... CTACATCACTGAGTACTCTCCTTAATCAAA 14335 36 100.0 30 .................................... AGTTTCTACCTTTATATAGCCTAAAAACAT 14401 36 100.0 30 .................................... TCAACCAGTCGCTATTGTCCACCAACGTAG 14467 36 100.0 30 .................................... AATATGGGCTGCAGTCGCGCTTTAAACTGG 14533 36 100.0 30 .................................... GAAGATCTTATTGGCAGGCTGGTCAAGATA 14599 36 100.0 30 .................................... GCAGATCTGGCCTTCTTGCCGATAGCATTG 14665 36 100.0 30 .................................... TGGTTGATCACGGGGATTCACGTTTTAACC 14731 36 100.0 30 .................................... CTGGGACCTGGTTATAATTCATTCTCCGGG 14797 36 100.0 30 .................................... CGTACATTTAGTACTCCTTTCTTGCTATTT 14863 36 100.0 30 .................................... TAGGAACTGAGTCGATCTTTGAGTACTGCA 14929 36 100.0 30 .................................... GTGTTCCATTCCTCCAAAATTTCCCCTCCA 14995 36 100.0 30 .................................... GGTGGTGGCAGTGCTGAAACTGACAATCAA 15061 36 100.0 30 .................................... AATGCTCGTTCATGTCCTCTTCTGAGCTGA 15127 36 94.4 30 ..........A.....C................... TAGCTAGAGCGGATATCAAAAATACTTCTA 15193 36 94.4 0 ................C...T............... | ========== ====== ====== ====== ==================================== =============================== ================== 39 36 99.7 30 GTTTTAGAAGGTTGTCTATTCAATAAGGTTTAACCC # Left flank : CAGTGAATCTTTACTTCAAAAGTACATGACCAAATTAACTAGTTATGTAGTTGATGAGCTAAGCGCAGATGGCAGAAACAGAATCATTACCTGCTATCGCGATTTACTAAATGCTGTTCAAGACGAGTTGCTTATGGAAGATTTGCCGCTTGAAATAAGTTTTGACACAGACTTGAAGAAACTCTTCAAATTTGGTGGTCTACACTTCAACAAGACACTCACTCGCGATCCATATGGTATAATCGAGACAGTACTTAGGATACATGACAGGTTAGATCTTAAGTCTACTGTTGTTTTTAGTAATGTAGCTCATTACTTAGATGCAGAACAGTTTAACGAAATATCCAAGCTGTGCTTAGAGCTAAAAAAGTCTATTATTTTTATCGAGTTTTGTAGCCATAAGGATCAGGTTGTATATGGTGATGCAAAATTCAGTTATATCGATGAAGACCTTGTTGATTGGTACTAGCCTTCTATTAAAGCCATGTTAAAAAATAACG # Right flank : GTTGTGTAGGTTCAAATCCTGTACTCTCCTTGTTTTGGAATATTTCCATTCAATGTTGTCAATTTTCCCGACGTATGTTGGGGGTGGCCATCATAATGGCCTAATACTAAGACGACAATTCTACTCATTCCACGCAGGTGGGGGTGATCGTTTTAGAAGATTGTCTATTCCGGCTCTATAATTTTTCTTACTGATGGATGTCAAGTAATACATCCGTCGGTAAGATTTTTTGTTTAAAATAAAAAAAGAGGCCCATAGGCCTCGCTATTCGTAACTTAAAATCCTCTACCACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGTTGTCTATTCAATAAGGTTTAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAAGGTTGTCTATTCAATAAGGTTTAACCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //