Array 1 43090-43356 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUXT01000164.1 Pseudoalteromonas luteoviolacea NCIMB 1942 contig_42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 43090 28 100.0 32 ............................ TTGCTTTGAATATGACGCTTGGAGAAGCTGCG 43150 28 100.0 32 ............................ CAACCCAGTAGCGAAAGACCCCATACCAACCG 43210 28 100.0 32 ............................ GAAATAAAGTATCAGCGCCATTGTCTTTGCTC 43270 28 100.0 32 ............................ TGAGTAGTCGAAAAGCGATAAGATTGTTTTTT 43330 27 89.3 0 ...AC.................-..... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.9 32 GTGTTCTGCCGCATAGGCAGCTGGAAAT # Left flank : AACTACTTTGAAATGATGGCCCACGACAAACTATTTGAAATGTCAGCTATAAAGCCAGTACCAGTCGATGCCCCTGAAGTACAGATTATCCGCGACCAAAGCTTAGGTAAATTGTTTATGGGTGAAAAGCGCCGCCGAATGGAACGCGCAAAACGCAGAGCCGAAGCACGTGGTGAGGAGTACATTCCACAGTACGTGCCGAACGATACAGAGATTAGCACATTTCATAAAATTCCCATTGCCAGCAAAAGCAATCAAAACGACTTTGTACTGCATCTAAGGTTAGAGCCAACAAATTCAATACAAAACACGTATAACAGCTATGGCTTTGCAACAAACAAAGAATACAAAGGCAGTGTACCGTTGTTAACCTTTTAAATCTCAATAGCTTTAGGAGTGTTGTATATCAGAGAGTTACGAGCCGTCGGTAAAACAAAGGTTATTCGTTAAAAGTTAGGATAATCGTATGGAACTTATGAAGTTTTAAGCTAATTTTAATA # Right flank : TTAGGCCTGGAAGTAAACAACTACATCGTATGACATAAAACTGCCGAAAAGGCAGAGGCCAATTCAAAAGCCCCAGAATTTACTGGGGCTTTTTGTTCTAGTAACATATATTTTACTTTTCAGGTTGACGGAGATTAGACTAAAAGGGTTAACTAGGACAGGTATCAGTTACTATCAACAAGCCATTAATATTAGGGAAGATATGTCATCAATTAGCAACACAATAGAGTATTTCAAAGACGACTTCTCCAAAGGTTTGTTCCCACTAGATACAAACAAAATAGTGATCACGAATAATGCTAATGCGATCAGTGATTATGTCTACCAGCAAGTGCTTAACTCAAGCTCTACTAAAGAGCATTTTCTTCCTCAAGCAAGGTGTCATGCTGCGAAGCATGGTTTGCATCTAAGACGAACTTTTAAGCTTGACCCTGTTGCAGAATTTTACATTTACGATCTGGTATACAGGAATAAATCGTCATTTAGGAAAGATTTTTCTG # Questionable array : NO Score: 2.96 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCTGCCGCATAGGCAGCTGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 52-263 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUXT01000082.1 Pseudoalteromonas luteoviolacea NCIMB 1942 contig_172, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 52 29 100.0 32 ............................. TCTATGAATAAGATTCTATTACAAACAAATGT 113 29 100.0 32 ............................. GTTTCAAACATCATCCCTGTTGTTTCATTGAT 174 29 100.0 32 ............................. AAGTAATGCTCAATGATCAGGCCTAACAATAA 235 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTGTTCCCCGTATGCACGGGGCTAAACCG # Left flank : TATGCACGGGGCTAAACCGCGAATGGTTATACTCTCGTGCAGAGCGTTTTGG # Right flank : TGTTTGGGTTGTCCCGTAGCTCACTTAATTTTGCGCGTACCACAACTTGTCCTGTCACCTTTTGCATATTTTGTGTCGTGATCTGTCAGTGTGTGGCGTACTTTGATTGCTTATACTGTGTGTCATCGGTCAACGGGTTTATAAAGAAGGTAAAACACATGGCAAATACGGCATTAATTACGGGCGCATCGGGCGGCATTGGTTTGGAACTGGCACATCTGCATGCTCAGCAGGGTGGCGATGTGGTGTTGGTGGCGCGCTCTGAAGACAAGCTAAAGGCATTGGCGAGTGAGATTGAGGTTAAATACAACGTGTCGGCAACGGTGATCAGCGAAGATCTGTCAGATCCACTCTCAGCGCAGCGTATTTTTGACAAAACAGAGGCGTTAAATTTACAAATTGATGTGCTGATCAATAATGCTGGCTTTGGTGGCCATGGCATCTTTTATGAGCGCGAGCGCACGGCGGATCAGTATATGATCCAAGTCAACATCACGACT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATGCACGGGGCTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,1.01 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 143856-147183 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUXT01000181.1 Pseudoalteromonas luteoviolacea NCIMB 1942 contig_58, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 143856 29 100.0 32 ............................. ACTATCAATTGCATTGAGTGTTTCATTTACTG 143917 29 100.0 32 ............................. CGTAACTAAGAAAGTTGATGACGTTAAAAAAA 143978 29 100.0 32 ............................. CATGATTAATGCTTTAGCAGCACGTACAGGCA 144039 29 100.0 32 ............................. TTAGCGAAGCATTTGTAAAACTAAAAGCGTTT 144100 29 100.0 33 ............................. AGAGCTAACCAACCCATTTACAAGAGAGGATGC 144162 29 100.0 32 ............................. TTCTTACAGACAGCTATCAAAAGTCAGTTACA 144223 29 100.0 32 ............................. GCCCTACGCTGTGACTATCGCACGACGAGCCA 144284 29 100.0 32 ............................. TATCAACGATTGGAATATATTTACTGCTGAAC 144345 29 96.6 32 ............................A TCCTAATCAAAAAATAGGTTTGGTTAAAACAC 144406 29 100.0 32 ............................. CAAAAAACAGTATTAAAAAATCACTCACCTTC 144467 29 100.0 32 ............................. CAAGCTAAATCTTTAATTGGTGCGGGGTGGGC 144528 29 100.0 32 ............................. CCAATTGCTTTAAACAGTGACGGCACTTGGAG 144589 29 100.0 32 ............................. CACTATGTAGTCACGGAAAATATAGTGACGCG 144650 29 100.0 32 ............................. TAAAACAGCAAACATTAGCTGCATTAACACAG 144711 29 100.0 32 ............................. CCAGAAAACCGACCGCCCATACGACCAGTACG 144772 29 100.0 32 ............................. AAACCAATCAAATATACCCATAATATAATCCT 144833 29 100.0 32 ............................. GCTGCAATGGCAAAGCAAAACGGCATAACAAG 144894 29 100.0 32 ............................. TGTTGATTTCTCTACAGCACTCCCAGCTAAAA 144955 29 100.0 32 ............................. AAAAAGAACATCATATGAATATGGCACTGGAA 145016 29 100.0 32 ............................. GGTGATTGATTTGCCAAACGGTAATTTAACCA 145077 29 100.0 32 ............................. CCCTGGCAGGGCGAACCACCTACCAACAAATC 145138 29 100.0 32 ............................. TAATTATTTTTTTCTGAATACTCAGATATGGC 145199 29 100.0 33 ............................. GGTGCAATTATGACAGCACACATCGACGAAGAG 145261 29 100.0 32 ............................. CGCAGAGGCTAAAGCTGTAATACTCAAGGCGA 145322 29 100.0 32 ............................. ATGGCGCTATGGCTGTACTTTACGTACACGGA 145383 29 100.0 32 ............................. TGGTGTCACTACAATACCTCAATTTAGAGTTG 145444 29 100.0 32 ............................. AAATGGAAGCTGAATTTAAATCTACCAGATGA 145505 29 100.0 32 ............................. ACAATTCGAAAAATCACGGTTGATATTGGTGG 145566 29 100.0 32 ............................. ACGAAAATGTTATTTCAAAGACCGTAAATACA 145627 29 100.0 32 ............................. CCCAGCAATGGGCTTTTATCTTTTCTTTGCGT 145688 29 100.0 32 ............................. ATGGTTGCAGATTCTGAAACCCTGATTTAAAG 145749 29 100.0 32 ............................. AGTAGGCACCGCACCATTTGAACCAAAACCAA 145810 29 100.0 32 ............................. TTGGTGCTATGATTTCGAAAATGAAAGCACAG 145871 29 100.0 33 ............................. CAACCTAATCAGGTGCAGTTTTATCAAAGCGCC 145933 29 100.0 32 ............................. ATAAAGCTCATTTTATTGGAACTAACGGGAAA 145994 29 100.0 32 ............................. CTAAATAAAGAAAATCAGATTTTAAACGATGA 146055 29 100.0 32 ............................. CGTGCAGTCTGATGTATTGCTTTATCTCAGGC 146116 29 100.0 32 ............................. TGTTCCAGCACTTCAACTGTCCTCATTCTACA 146177 29 100.0 32 ............................. TTATGGTGACGTGCTGATTAATAGCGGAAAAG 146238 29 100.0 32 ............................. CAATTAAACGAAAGTGTGCAAGTGTTGAGTAA 146299 29 100.0 32 ............................. TGTGGCTATGGGTGCATTTGCAGCTGTGAAAC 146360 29 100.0 32 ............................. CATGGCGCGTTGCTGTCTCACTTCAATGACAA 146421 29 100.0 32 ............................. GCTTATCGAGAGAATGGAGCAGGCAGGAATTG 146482 29 100.0 32 ............................. CATAGGAATTGAATGCCAGTGTGGCGCTTTGA 146543 29 100.0 33 ............................. CTGGTAACAGTGCCGACCACTTCACCAATAAAA 146605 29 100.0 32 ............................. CCGTAAATAATTTGTTCGGCGGGGATCCTTTG 146666 29 100.0 32 ............................. GAAGACATGTTTATCTTAGGTGACTTCGTAAA 146727 29 100.0 32 ............................. TCCTGTTGAAGCACAGACTGGTTTTGTGGTGA 146788 29 100.0 32 ............................. TATACTCACCTTCAGGGACGCAACTCACATTT 146849 29 100.0 32 ............................. TATGAATGAGTTTTTAATGGGAGTGGACTGGG 146910 29 100.0 32 ............................. GAGTTAGTGCCATTAGTGCATTAGCAGAGGCT 146971 29 100.0 33 ............................. CCATGTAATTAAATCACTCAACTGCTATCCTCC 147033 29 100.0 32 ............................. CAGGTCAAAACTTGTCAAACTGACAGTGCCAT 147094 29 100.0 32 ............................. CAAACAAAAATCATAATAGAGAGACTATAAAA 147155 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 55 29 99.9 32 GTGTTCCCCGTATGCACGGGGCTAAACCG # Left flank : ATGTGACCTTTTTAAATCAATATTCCACTCGTATTCTTCCCGGCTCCGATTTTGTGGCAACCGACACCAAACGCTTTAAACATTATGCTCGTGAAGTCGAGCTCACAAGTTATATCAACCAATTCTTAAACGACAACGCATTTCGTAATATTGCTCTTGGACAAAACTACTTCAACCTGATGGATTTGGAGTACGAAGCACCTCAGATTTGTGACGAGTGATGGGGGAGCCTGCTTCATGAAACATAGCAGGATAAAAAATAAAGCGTAAGAGTAATTTATCACTGTATATTCTTTACACAAAAAGATAAGGTTGCAAGGGCGTAGAGCATATGTATTTATTCAGGTTAAAACTGACTTTGCACTTTAAAAATTTGGGAAATATAGGATGTAGTTCATTGTAAACTTGAAGTGGTTTTTGACCTAATCTTTGTACCTATAATTTTTGGTAGATTTTTATGTTCTAAATTTACTTTTAGAAATCAATGGTATAAATTTAGA # Right flank : GCTAGTTCGCAAATACCAGTGACGCAAACAAAGCGATAAACGCCTTCCATATCAGCGGGGGGATTGTGTGATGTTCACAAGGGGTTTTCCAGATTCGTTAGCGAGTGTTGAAGCTACCTTTACCAAACGTGCTGTTCTTCGTGGATCTCCTAACTCACTTTTTGCAAATTGTTGCTCTGCCCACTTGGTATGTTGGTCAATCATTATCTTCTCCAGTGTATGGTTTGAAGGTCTGATCACACTAAGGAAGTTTAGTTCAAAAAAATCCCCGCTAATTTCTTAGCGAGGATTTGTGTATAAGAGACAGGGAAAGAGCAGCGTTCTTGCTAGTTGGCAAACATATACAAAAATAATGCAATTGATGGCATTTCGATAACTTGTCTTTGATCAATGACAGCCTTAATGAGTTTTGATACATTTATTTCACTTTTAATTTACTGATAGTTGTTTATGCAGGCTAAGGAAGAGCAATATTTTAGATATATTGAGGCCGTGTTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATGCACGGGGCTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,1.15 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 2 157944-158765 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUXT01000181.1 Pseudoalteromonas luteoviolacea NCIMB 1942 contig_58, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 157944 29 100.0 32 ............................. GCAGCGGGGGCGAAAGCAGTACGCAAAACTGG 158005 29 100.0 32 ............................. ATTGGCAACTGTCTATTCGAGTCAGCTCGATA 158066 29 100.0 32 ............................. GCGCATATTAGGAGCTAACTAATTAATTGATA 158127 29 100.0 32 ............................. CAGTGCAGTCATCAGCAGATGGAGACCAAGAG 158188 29 100.0 32 ............................. TTCGACGGCTTCCTCTTTGGTCAGATTCCAGT 158249 29 100.0 32 ............................. GAGGCAAACAATAATTTCGTAATGTAGCCAAA 158310 29 100.0 32 ............................. CTAGGTATAGATACTTCGGATGGTGATGATGT 158371 29 100.0 32 ............................. CGCTTGGTATTACTCCTGAGCGCGTGGAGAAG 158432 29 100.0 32 ............................. CACAGGCAATCTAGTGCATTACATCAATAGTC 158493 29 100.0 32 ............................. AGTGGCCAACGGCAAAAGAACCTTATTTTTAT 158554 29 100.0 32 ............................. TTAGATGACAACCCGCACTACGTAGCTGCACT 158615 29 100.0 32 ............................. TTTTTAAGCTGTCCAATTCATTAGGGCACAAG 158676 29 100.0 32 ............................. CATGTTTTTTAAAATCAGACATCTTTACAACT 158737 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 100.0 32 GTGTTCCCCGTATGCACGGGGCTAAACCG # Left flank : AGAACCATATGAAGATGCGCAACCTCCAGCAATTCCTGAACCCGAATCAATTGGCGATGATGGTCACCGCAGTGGTGGTCCATTATGAGTATGTGTGTTGTTGTAACGGAGGCGGTACCGCCAAGGCTGAGAGGTAGGCTCGCTGTATGGCTGCTGGAAATCAGAGCGGGTGTATATGTGGGGGATATTAGTCGCCGCATTAGAGAAATGGTGTGGTTTCAAGTTAGTGAGTTAGCTGAAAACGGTAATGTAGTAATGGCATGGGCAACCAATACTGAATCGGGCTTTGATTTTCTTATGGTAAAAATGCTCGAATGCCAGTTGATTTTGATGGGCTGAGGTTGGTGAAATATACACCGCAAGAAAGCTCTTCTATTGATAATGAATAATTGTTTTGCTCTTTAAAAATATGGCTATTTAAACCTCGTATTGTACCCAAAATTTTTGGTGGATTTTTATGCGTTAAATTTACTTATATAAATCAATGGTATAAATTTAGA # Right flank : TTTAAAGGCAAGCTGAGAAAAGGCAGAAAGCTGTGTTCCCCGTATGCACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATGCACGGGGCTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //