Array 1 171584-170296 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQFV01000034.1 Pasteurella multocida strain 3347PM isolate swab isolate 1 contig_34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 171583 28 100.0 32 ............................ AGATAATTACAGTTGTCAACAATTATTTTAAA 171523 28 100.0 32 ............................ TGTTAGTTACGTGCAACAAGATAACCACTTGT 171463 28 100.0 32 ............................ ATTTATTTAGATGATTTTTTGAGGGGCGGAGA 171403 28 100.0 32 ............................ AATAGATGAGCTGTTTGTAACGGAGTTTCAGA 171343 28 100.0 32 ............................ TTACAAAGCAGTTAAGTATTCAGAATCTTCAA 171283 28 100.0 32 ............................ GTTCTTTAAAGAATACAAGCTCAACTGTATGA 171223 28 100.0 32 ............................ TTTGAGTAGTAAATATTATGGAATTCATTCAG 171163 28 100.0 32 ............................ GGATCGATGATTGCTAGCAAGTAATCTTTGAT 171103 28 100.0 32 ............................ TTCCGATTTTTGATAGTCAAAGACTACTGAGT 171043 28 100.0 32 ............................ AAACGGTCGTGCGTCGTTCGGGTTGTGATCTT 170983 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 170923 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 170863 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 170803 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 170743 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 170683 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 170623 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 170563 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 170503 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 170443 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 170383 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 170323 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 22 28 99.8 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 96369-91299 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQFV01000030.1 Pasteurella multocida strain 3347PM isolate swab isolate 1 contig_30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 96368 28 100.0 32 ............................ AATAGCCTCTTAGTCAACCAATAGCCTCTTAG 96308 28 100.0 32 ............................ ACTTCGATAATAAATAAGTTCTCTTTATGAGC 96248 28 100.0 32 ............................ TTTCATGATATCATCGCCTTGTGGATTAAATG 96188 28 100.0 32 ............................ AATAGCCTCCTTTAGTCAACCAATAGCCTCTT 96128 28 100.0 33 ............................ ACCCACGCCGGAAAGGAATAACGGCTTATTAAT 96067 28 100.0 32 ............................ ATGTTGTAATGCACACCGTAGGGGGTATTTGT 96007 28 100.0 32 ............................ AATAAGAAAACACACCGTAACTACTGGGAAGA 95947 28 100.0 32 ............................ GTCGGAGCTTAGGATGGGGGAGAGTATCGTGT 95887 28 100.0 32 ............................ TGAAAAACCTTTTGACATTGACACGAACGAAC 95827 28 100.0 32 ............................ TCAAGGTCTCTTAGGTACACTTCGAAATCAGT 95767 28 100.0 32 ............................ TCAAAGTTACTCAATAAGATTTCTTTGTCGTA 95707 28 100.0 32 ............................ GTCTGAAAAACATTATATAAAGATAACAAGTG 95647 28 100.0 32 ............................ TTGGGGAACCACCTGAAAAACCTTTTGACATT 95587 28 100.0 32 ............................ TTTCATGATATCATCACCTTGTGGATTAAACG 95527 28 100.0 32 ............................ ACACAGGGAAATAGTCAGGTGTGGTCCACGAT 95467 28 100.0 32 ............................ TTTTAGCCACTCATTTAGTCGACCAACAGGTC 95407 28 100.0 32 ............................ GTACTTAGACGGGCTAGCTAACGAATCTTCCT 95347 28 100.0 32 ............................ GCTTGAACTAGAATACTCATAAGGTGGTCTTT 95287 28 100.0 32 ............................ CTTTTGTGTTCTCCCTAACTCTTTCATGTAAG 95227 28 100.0 32 ............................ TCAGCTGATTCCACTTCGATAATAAATAAGTT 95167 28 100.0 32 ............................ GCGATGAAGACGTGAAAGGTTTACTAGATACT 95107 28 100.0 32 ............................ CCAGTTCGACGTGCTGTGAACTTAGGGTTTCT 95047 28 100.0 32 ............................ TACGTGGAACTAATGAGATTGACAGTCGTAAG 94987 28 100.0 32 ............................ GCAATGTTACTAGCGAATCAGCTTATGGTTAC 94927 28 100.0 32 ............................ ATTGAGATAAGGGGTCGTTAGGCATCACACCT 94867 28 100.0 32 ............................ AACAATGAATGCGTTCTTACGCTGATTCATCT 94807 28 100.0 32 ............................ AGTGACATACTACCCCCTACAACTTCTTCTTC 94747 28 100.0 32 ............................ GTATGAAGAAAGAAGACTTATGGGGTCTAGTT 94687 28 100.0 32 ............................ AAATTGTTAAGAACGTTATAAGCGTCTGTTTG 94627 28 100.0 32 ............................ ATGGGGACAATCAACGACCAGTTAAAAGCAGG 94567 28 100.0 32 ............................ GAATTTCCCGCCATCAACGCGCACTTTTCCGC 94507 28 100.0 32 ............................ ATTCGTGACAAAAGACGAATATAAGAAAAGAA 94447 28 100.0 32 ............................ AGTGCGGCGTGCCGTCGTGGTGTGGCTCTGTT 94387 28 100.0 32 ............................ GATCGCAAATAAAATCGCCGATCTTGGCACTA 94327 28 100.0 32 ............................ GCGTCGGCGGGAAGTTATCGATCAATCCCTGA 94267 28 100.0 32 ............................ TGCTGTTCACTGGCACAATAGTAATGGTTCAT 94207 28 100.0 32 ............................ TAAATAAACCACTAAAACTAAGAATTTTTTGA 94147 28 100.0 32 ............................ GTTTGGGAGTGGAATTGTTTGATGAAAACAAA 94087 28 100.0 32 ............................ GTTTCTGACACTTCAACTGTTAGACTGAACGT 94027 28 100.0 32 ............................ TTCTGCGATTTTAGTCGGTGGGTATCATCGTG 93967 28 100.0 32 ............................ AAGCCCTTGTTACACCAACCACCTCTGTTGCC 93907 28 100.0 32 ............................ CAGCTCGCAATGATTCTGTTTGAAAAGGCGTT 93847 28 100.0 32 ............................ TTCGTCCGTAGTTACAAACAGCATAGCTCTGA 93787 28 100.0 32 ............................ TCTATATATTGTTTTTCATTGGGCTTGGTCGG 93727 28 100.0 32 ............................ TCCAAGCGCGAGGAGGGATAACCATAGGCATA 93667 28 100.0 32 ............................ AACAGCTCACCTTGGGGAACCACCTGAAAAAC 93607 28 100.0 32 ............................ ATATCCTCACCGCTATAATGTGGTAAATCTAA 93547 28 100.0 32 ............................ ACTACGGGAAATACCCAAATATCCTGCGGATT 93487 28 100.0 32 ............................ ATATCCTCTACTGTTAATTAGTTGATTATTTA 93427 28 100.0 32 ............................ GCGACCAATCAGGGACACTCGTATCACAGAAG 93367 28 100.0 32 ............................ TGTTAGCTCACCGAAGCTACCCAGTGCACCAT 93307 28 100.0 32 ............................ ACTACAAGCCAGCGACGACAGTTATAATTTTA 93247 28 100.0 32 ............................ AAATTAATAAAATTGTTGTGCGATTGCGTGAG 93187 28 100.0 32 ............................ ATTACCCCTACAAAACGCATAACATTGTTAAA 93127 28 100.0 33 ............................ CAGGAAAAAAACCGAAGTATTTAAGAGATTTCA 93066 28 100.0 32 ............................ ATTTACCCCTTCAATATCGGTTGTGTATTTCA 93006 28 100.0 32 ............................ CGTTGAAGAAACCTCCACGCCTTTAAAATCAA 92946 28 100.0 32 ............................ TTTGAAAACCCGGTATTTTGATTTTTCTCAAC 92886 28 100.0 32 ............................ ATTTATCCCAAAGCGACATGTCATCAGGCATC 92826 28 100.0 32 ............................ CATTTGGGGCAACGAATGACGAAAAGCGCACA 92766 28 100.0 32 ............................ TCTTTCCGTTTATCTTTGAAAAAATATCATAT 92706 28 100.0 32 ............................ GTTTAGTAACGGGTCAAGCGGAAGATGAAATC 92646 28 100.0 32 ............................ AATCTTGCCGAGAAAATCGCCGAAAGAGAAAG 92586 28 100.0 32 ............................ GATCGATATGTTTTTAAATACAGTTTGCGGAA 92526 28 100.0 33 ............................ TTGATAGCCGTGAAAGCTACGATCACCTTTTTT 92465 28 100.0 32 ............................ TTGTCACAAACGACATCTTTTGTCTCAACGGT 92405 28 100.0 32 ............................ ACCCGCACTTGCTGTTTTATTCGCCCAGTTAA 92345 28 100.0 32 ............................ ATCAACGGGAGCGTAAGCGAAATGAAGAAACG 92285 28 100.0 32 ............................ TTTTTTACATCTGCCATTGCGCTTTCAAATTT 92225 28 100.0 32 ............................ ACTTCCGCGAATTTCGTTAAAAAACGACCGCA 92165 28 100.0 32 ............................ GCAACAAACGGTTATTACGAAGAAGAGATGGA 92105 28 100.0 32 ............................ TTTGACAGCAGTCGAAGACGAAAGCGGCGATC 92045 28 100.0 32 ............................ GAGCGTTATCGACCGTCGATGACAAAAGACAG 91985 28 100.0 32 ............................ AATGATAGTTACTAACATTAAGCCGATTGCAC 91925 28 100.0 32 ............................ TTGCCACACAATCGGTCGAGTGAGTTCATTTG 91865 28 100.0 32 ............................ AGCTGATCAAAAGTTAAATTCTTGTCATCTTC 91805 28 100.0 32 ............................ GAATGAGGCACCTGAATCTGGCAGTTCTAAAC 91745 28 100.0 32 ............................ TCCCACCTATCCGCATCCTCAGGCCACTCACC 91685 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 91625 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 91565 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 91505 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 91445 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 91385 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 91325 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 85 28 99.6 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //