Array 1 22979-23665 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDNN01000028.1 Bacillus thuringiensis strain DE0589 NODE_28_length_66193_cov_72.370135, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 22979 32 100.0 34 ................................ ACAAGATACGAGAATTTAATGACGTCACCCACAT 23045 32 100.0 34 ................................ TATTGTTACACCTTTAGAGTATCCGAGTAAAAAA 23111 32 100.0 35 ................................ ACAATGGGAAAGTGTTAGGTTATGCACGTTTTAAA 23178 32 96.9 32 .......................A........ GAAGATAGTAGAAGAAATCAAAAAAAGTGTAT 23242 32 87.5 33 .........T.A.......T...A........ TTTGTTGCTCCAGTCGTTATGATCGTCTTTGCA 23307 32 93.8 33 .......T.T...................... TAGGAGTTATTAATGGCTTTAGATGTTAGACCA 23372 32 90.6 34 .........T.........T.A.......... TACCTCGGGTTTATATTTATCTGGAATGCCCATA 23438 32 93.8 33 ........CT...................... TTTGCAACTAGCTCAATTGTTTTTCCGTTTTCA 23503 32 96.9 34 ....................A........... TACCTCGGGTTTATATTTATCTGGAACGCTCATA 23569 32 90.6 33 .........T.A.......T............ ATAATATCACAATTTTGACAAAATTCAGTCATG 23634 32 90.6 0 A.T.................T........... | ========== ====== ====== ====== ================================ =================================== ================== 11 32 94.6 34 GTCGCACCTCATATAGGTGCGTGGATTGAAAT # Left flank : ATTGAAAATGGAGAAACAGAGAATTTATATCCAGGGATTAATAAACAAGGAATAAGAACATTTTACACGAAACATTCTACAGATGTTGAGAATGAGGTTGCTACTGCGATTCATGTGTACGTTGATGTATTAAAACAAATGAAGCGTGAAGGTGCTGAATTAGCAAGGAAGAAGTAGAACGATGTGATTAGAAGATTTAATAAATAAAATTCTTCATCATATTATAAAACTATACATTCTTGTTTATTAGTTAGCTAATAGCTATGAAAATAAAATTAAATATATCGGTGTACAAGAATGAATTGATTTAGAAAGTCCTTTGATTTTTTAGGTGCGAATGTATAGCAAACATGAAATTCCTAGTACATTCGCACCTAGAATTCTCATAATGTATGATGGGGATTTATGATTTTTATACAAAATACTTTAATAAATAAAAATATTTTTATATTTTTGAATAGAATTAACGTATTTGTGATTGATTTTGAGCACAAATCGGT # Right flank : TAGTTTAGTAGATACTCAACTAGAAGTATCTATATCTGCAGTATCTAATACAAAAGTAAACAGTATAAAATGGAGGGAGATTGAATGACCTACATTGCTCATATACGCGAGAGTGACAGTCAAGTACAAACAGTCGAAGAGCATTTATTAAGAGTAAAAGAACTAGCTGAAACCTATGGAGAAAAAATTGGTATAAAACATTTAGCTGGTTTAGCCGGTATGCTCCATGATATGGGGAAATACACCAATGAGTTTAAAGAATATATATTGGAAGCAGTAAATAATCCTAATTCTCCACCTAAAAAGGGGAGTGTTGACCATTCAACTGCAGGGGGGAAATTGTTATATCAATTATTCCATACAGAAAATATGATTCCTTACAAAGGGATAATATCTGAGATAGTGGGAAATGCTATTATTTCTCACCACGGATACCTTCAAGATTTTTTAAATCCAGATTTAGAATCGCCCTATTTAAATAGAGTGCGAGATAAGCAATT # Questionable array : NO Score: 8.44 # Score Detail : 1:0, 2:3, 3:3, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 30639-31065 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDNN01000028.1 Bacillus thuringiensis strain DE0589 NODE_28_length_66193_cov_72.370135, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 30639 32 84.4 35 ....T....CT.G.....A............. CATTGGCGGTAGTTCATAAGTAACAACAAATGGAT 30706 32 87.5 34 .........CTAG................... ATGATATTCAAAGAGCCTGAACAAGTGGAATCGA 30772 32 100.0 35 ................................ ATAATTGAATATGAGCTGCCGCCGATGGAAGGGAC 30839 32 93.8 33 ...................T..A......... ATGGAAATGGAACGTTCTTACGGATCAAAAGAA 30904 32 96.9 33 ..............G................. ATGTAGCTGGTATTAATGCTTTGTGAAAAACAA 30969 32 96.9 33 ....................A........... TAAATTACTTGCTGCCTTATCTAGATTACTTTC 31034 32 68.8 0 ......T..CT.G......TA....G.A.G.C | ========== ====== ====== ====== ================================ =================================== ================== 7 32 89.8 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : ATCCGATTGACATTACTAGTATGCAGATTACGAAAAGTGTAATGTCTGAGCCTGGGAAAGATAAAGGTTCAGATACGATGGGGATGAAGCATGGTGTTGATCTTGGAGCTTATATATTTTATGGAAGTATTCATATGCAATGAGCAAGGAAGACAGATTTTACCAAAGGTGATGCGGAAAAGATTAAAAATGAACTGGTTACATTGTTTGGAAATGATGGGTCAGCAGCACGCCCTGAAGGAAGTATAGAAGTACATAAAGTTTGTTGGTGGAAACATAATTCAAAACTTGGCCAGTACTCTTCCGCAAAAGTACACCGTTTACTGGATATTAAGCGGAACATTGACGAACCAAAAATAATTGATGACTATAACATTTTGGTAAAAGAATTAGATATTTTAAAAGTGGCTATTATTGATGGACTGTAATGAAGAAAACGTTAGAATAATTGAAGGAAAGCGTATTTATTAAAAAGTTAATCAACCATTTATTAAAGAAAA # Right flank : CTGATAAGATAATTGATAGTAATTTAGTGTTTTTGTTGGAGTAAGGGGACCTACTTCAATTCATACGGCAACTAGTGTTGATCCGATTGATATTACTAGTATGCAGATTACGAAAAGTGTAAATTCTGATCTTGGTAAGGATAAAGGTGCTGATACGATGAGTATGAAGTATCGTGCTGATTTTGGAGTATATGTCTTTTATGGAAGTATTAATACATAGTTAGCAAAAAAGACAGGTTTTACTAACGAAGATGCGGAGAAGATTAAAAATGCACTGGTTACATTGTTTGAAAATGATGCATCAGCAGCACGCCCTGAAGGAAGTATAGAAGTGCATAAAGTTTGTTGGTGGGATCATAATTCAAAACTTGGTCAATACTCCTCTGCAAAAGTACACCGTTTATTAGAGGTTAAACGGAATATTGACGAACCAAAAACAATTGATGATTATACTGTATTGGTACATGAATTAGATGGTTTAAAAGTTGAGATTATTGATG # Questionable array : NO Score: 6.59 # Score Detail : 1:0, 2:3, 3:3, 4:0.49, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [9-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 5797-6158 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDNN01000081.1 Bacillus thuringiensis strain DE0589 NODE_81_length_20519_cov_38.095131, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================= =========================================== ================== 5797 39 100.0 41 ....................................... GGTTGTTCTTCCTCTTACCTATTTTCCTTTACTGACATCCT 5877 39 94.9 40 ........T..................T........... TGCTGCTCTTTCTTTTCCCTATTTCTTCTTCTTACATTTC 5956 39 100.0 41 ....................................... GGTTGCTTTTTTTCTTACCTCTTTCTCCTTACTTACATTCT 6036 39 84.6 43 ........T...T..G......T.TC............. CGTTTGCTCTTTCTCTTACCTATTTCTAATCAACTTGCAACAC T [6057] 6119 39 82.1 0 G......GTA.T......C..T................. | T [6143] ========== ====== ====== ====== ======================================= =========================================== ================== 5 39 92.3 42 TTTTGCGCCTTGCTTTCCTTAACTCTTCAACTTGCAACA # Left flank : AACTTGCAACATGCTGCTCTTTCTTTTCCCTATTTCTTCTTCCTACATTTCTTTTGCGCCTTGCTTTCCTTAACTCCTCAACTTGCAACATACTGCTCTTTCTTTTCCCTATTTCTTCTTCCTACATTTCTTTTGCGCTTTGCTTTCCTTAACTCTTCAACTTGCAACAGGTTGCTCCTTCTCTTCCTTATTTCTACCTACTTGCATTTCTTTTGCGCTTTGCTTTCCTTAACTCTTCAACTTGCAACAGGTTGCTCTTCCTCTTACCTATTTCTTCTTACTTACATTCCTTTTGCGCTTTGTTTGCCTTAACTCTTTAACTTGCAACAGGTTGTTCTTCCTCTTACCTATTTTCCTTTACTGACATCCTTTTTGCGCTTTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTCTTCTTCTTACATTTC # Right flank : AGTATAATTTATTTCTCAACTAAGTAATTCTAAAAAAAATCATGTCATTTTAAAGTTTTCAAGCTATTTTTCTCATATTTTTTATAAGTTACATACATAATATGCAACATGTTTGCGGTATCCTTTCCCTAACTTTTCTATCATCTTCACCATAAACCTTTATATACCAAGGGTTTAGGTGCTTTTCCATTTACTTTTATACATATCATCCAACTTGCAACACGTTTGCGGTATGCATGCCCTTATTTTTCTCACAAGATGCAACAGTGTTTGCGGTATCCTTTCCCTACTTTCATTCTATAAATGTCAACAAGTCCTTTTATATCAAGGGTAATTATTACAATTCATTTTTAATCATTACGTTCACTAACTTGCAACATGTTTGCGGTATCCTTTCCCTAACTCCCCTACCATTTTCACTATAATCCTTTATATACCAAGGGTTTAGGTGCTTTTTCACTTACTTTTATACATATCACACAACTTGCAACACGTTTGCG # Questionable array : NO Score: 2.59 # Score Detail : 1:0, 2:0, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTGCGCCTTGCTTTCCTTAACTCTTCAACTTGCAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //