Array 1 242409-244718 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXOB010000004.1 Chromobacterium violaceum strain RDN09 NODE_4_length_492977_cov_63.485194, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 242409 28 100.0 32 ............................ GGCCAGCGCCGTTGTGACAAGCGATGCTACGC 242469 28 100.0 32 ............................ AGTTCCTCAGCAGCAGTAACCACATGCTCAAC 242529 28 100.0 32 ............................ TGCAGCAACAAGGGCGGTGATTGCGATGGACA 242589 28 100.0 32 ............................ TGGTTCGACGCCAACTGCTCGCAGGCTATGAA 242649 28 100.0 32 ............................ GTTTGAACAAATGGAAGTTGGCCAATCCTTCT 242709 28 100.0 32 ............................ AACTGGAACAGAGGGTCCATGGTCAAAACTCC 242769 28 100.0 32 ............................ AATCCTGTTAACGTCCGAGCTTAATTAAATGA 242829 28 100.0 32 ............................ TGAAAATGGGCGCACTGAATTGGTATTAGGTT 242889 28 100.0 32 ............................ TGGGAGTCGAGCTCGGCCAGCAGTTCCTGGAT 242949 28 100.0 32 ............................ TCGTCTGGTATCAAGTCGGGACCATCCAGCGT 243009 28 100.0 32 ............................ TAGGAGTGCCAACAGCGCGATCAGGCCCAAGC 243069 28 100.0 32 ............................ TCGCGGAACAGCAAGAAACAGGTCACTTACGC 243129 28 100.0 32 ............................ ACATCCACCGCCAAAGCCAAAGCCGTCACGCC 243189 28 100.0 32 ............................ GTTTGAACAAATGGAAGTCGGTCAATCCTTCT 243249 28 100.0 32 ............................ AAGCCCGGCCTGGGGCAGATCCAGCGCGGCGG 243309 28 100.0 33 ............................ CAGCACCGTCACAGACGACGAGCTGCTGGACGA 243370 28 100.0 32 ............................ TGTTGGCGCATTTGCTCCGCCATAAACCTCGC 243430 28 100.0 33 ............................ CCGGCGCAGTCGGCGGTATTCGAGGTGGTGACA 243491 28 100.0 32 ............................ TTGTTGTTTAGCTTGTACTACAACTTGTTGAA 243551 28 100.0 32 ............................ AATGGCTTCCCGGTTCGATTCCGGGGCCGTGT 243611 28 100.0 32 ............................ AACTCCACCACTCCACTTTTCATTTTTACATT 243671 28 100.0 32 ............................ CGCATCGTGGACACCTGGGGAAACGTCGGCGA 243731 28 100.0 32 ............................ GCCAGCCAGCGCGAAACCTCCGGGTCGATCGC 243791 28 100.0 32 ............................ CCGCCGCAGCATCTGCCATCCGTCAATGGACG 243851 28 100.0 32 ............................ TATCTGATCGACGACGACACCATGGTGCTGGG 243911 28 100.0 32 ............................ TGCCCGGTGCGAATGTGATGCGCGTACGTTCT 243971 28 100.0 32 ............................ CGTTCAGATAAAAACACCTGGTGCCCGCAAAC 244031 28 100.0 32 ............................ AACCCTGGCACGCCGACCAGCAGGGGCAAAGC 244091 28 100.0 32 ............................ TGACCGGAGTGGTCTCTACCCTGTCAGCCTGC 244151 28 100.0 32 ............................ ATGGAAATCCCACCCCAAGCGTATGTTGCGCC 244211 28 100.0 32 ............................ TGTTCATCGCTGCCGTTAAAATCAACGCGGCA 244271 28 100.0 32 ............................ TCTACGCGATGCCGCCCTGGATGGAAGAGGAG 244331 28 100.0 32 ............................ ATATCAGCAGGGGGCGAAGGTGAATCCGTAAT 244391 28 100.0 32 ............................ ACCGTGGCGGGCATCGGCGGCCAGGGCCGCGA 244451 28 100.0 32 ............................ AGGATGAAGCACGGGACAAGTTACGTTCCCTG 244511 28 100.0 32 ............................ ACATCCAGTCGTAGGGCACATCATCCGGCGAC 244571 28 100.0 32 ............................ GGCGACGAGTTCATCGCCTGCGCGTTCGACAT 244631 28 100.0 32 ............................ AGTGATGCCTCGCCAGGTCCAACGCTCTTTGC 244691 28 96.4 0 ................C........... | ========== ====== ====== ====== ============================ ================================= ================== 39 28 99.9 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : CCGTTGGCTCAGTGGCTTCGCCGACCACGCTATCGTCGGCGACATCCGCCCCGTCCCCGCCGGCGCAAGCGCGGTCAGCGTGCGCCGCCGCCAGGCCAAGAGCAGCCCCGCGCGCGCGCGCGACAGGCTGATGCGCCGCCAGGGCATCAGCGCGGAAGAAGCGCGCCGGCGGATACCGGACGAAGCGGCGCAGCGGCTGAACCTGCCCTACCTCACCGTAGACAGCGCCAGCACCGGCCAATGCTTCCGGCTGTTCGTCGAGCAACAGGCCGCGCCAAGCATCGCCGCGGGCAGCTTCAATGCCTACGGCCTCAGCGCCGCCGCCGCCCTGCCGGCTTGGTAGCCCGAAAGGGTCGCGGCCAGGACCGCGACCCTTTTCTCTCCCGCCAACCTCCACCTTTTAAAATCAGAGACTTAACATCATGCCAGCAAAAAGGGTTTTGCCGGCAGAAATGGCTGACAGCCTTGCCGAACAAGGCTGATGGGCAATAAGATCTCTA # Right flank : AGTAGTACGCACGTCCGTCATTCCGGAGCATTACGCGCTGCGCCTGGACGCCTGAATCACCATGCACGAGGACCTGCGGCACAATCCCGCCTGCAAGGCGGTGTTCAGCGCGCTGGTGGAAGGCATGCGGCGGCATGCCGGGGATGTGCCCTCCGGCGGCTGTCCGCCATGAAAAAAGCCGTCCCGGCATTGACCCGGAACGGCTTCTTCGCAGCCGGCCGCCCTTACTTGGGCGCTTTCGCCTGCGGCAGCCGCTGCAGCAGCGCGAAGGTCATGTTCTGCTCGCGCGGGCGGTTGCCGGTCCACAGCACCTGCCAGCCTGGCTCGGCCACGCCCTCCTCGCTGCTGCGCACCACCAGCCAGTAATCGCACGGCGGCGTCTCCCCGGATGGGAAGGACAGCAGGTCGATGCCGGCGTAGTAGCGCCAGCTGATCATGGCCAGGCTGTTGCGGTTTTCCGTCGCGATGCAGGTGGCCGTGGCAGGCAGCTTGCGCAGCAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 279926-280502 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXOB010000006.1 Chromobacterium violaceum strain RDN09 NODE_6_length_289289_cov_68.514491, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 279926 29 96.6 31 ..A.......................... ATCTGGCCGGCGGCGCCACGTCGGTCATGAA 279986 29 100.0 32 ............................. CCCTAGATCAAAATTTGCGCCAATGCTTTTAA 280047 29 100.0 32 ............................. ATCGAGGTCATCCCAGGGGTTCGCTACTACTT 280108 29 100.0 32 ............................. AGGGCAATCTCCCCATGCAATGGGTGCTGGAC 280169 29 100.0 32 ............................. TCGGTCGCGCCATCGGTGATCACGCCCTTGAT 280230 29 96.6 32 ............C................ AGTCCACCACACAGTAGAGCAGTTTCCAACAA 280291 29 96.6 32 ............C................ CCGGCGGCCTCGGCTGACAGGGTGAACAGGCC 280352 29 96.6 32 ............C................ TCTACAACCCACAGAATGGCCAATGGCAGGAT 280413 29 96.6 32 ............C................ CCCTTGAAGGCGGCACCGCGCCCTGGCAAAAA 280474 29 75.9 0 ............GTT..........GTGA | ========== ====== ====== ====== ============================= ================================ ================== 10 29 95.9 32 GTGTTCCCCACGTACGTGGGGATGAACCG # Left flank : CTTGCCCACGCCGGGCGGGCCCCACAATATCATCGAGTGCGGCTTGCCGGACGCCACCGCCAGGCTCAGCGGCTTGCCCGGGCCGATCAGGTGCTGCTGGCCGATCACCTGGTCGAGCGCTTGCGGGCGCAAGGCCTCGGCCAGCGGTTTTTGCGGTTCGACGGAAAAAAGATCGGACATGGCGCGGTTTTGGCGGGATGGGGCGGAGAAACAGTATACCAGTTGGGGACACGCATGAAAAAAGCGGCAGTCAGGCGCTTTTTGCTTGCATGTCGATGGAATGAAGGTAGGCTATGGCTGCTGGCCTAGCCTAAGCCTTGCTGTTGCGGAAGCTTGGCGTTCAGCATCAGGGGCGAGCGGTGTCGAACCCTTGTGCAAGGGACGATTGGCCAAGGCCTGGCCGGGTTTGCCGTGCTGATTTGAACGCCGCTTCGGACTGGGAAAATCGGTAGAATTTTAGATCGGGTTTTGTCTTTAAAAATCAGTAGCTTGAAAATGGT # Right flank : ACGGGGGACGGCTGGAGTGGTGTCGCGGCGCTGCCAGTCCGGCCACGTCCGGTAACAAAAAAGCGCCCCGTGGGGCGCTTTTTTCTGCACAACGAGTAAGAAGGCTTAGGCGCGCTTCTTGAATTCGTTGGTGCGGGTGTCGATTTCGATCTTTTCGCCGGTGTTGACGAAGGCCGGAACCTGAACTTCGAAGGTGGTGCCTACCAGGCGGGCCGGCTTCAGCACTTTGCCCGAGGTGTCGCCGCGCACGGCCGGCTCGGTGTATTCCACTTCGCGGATCACGGTGGTCGGCAGTTCCACGGAGATGGCCTTGCCATCGTAGAAGGTTACCTGGCACACGTCTTCCATGCCGTCGACGATGTAGTTGATGGTGTCGCCCAGGTTGTCGGCTTCCACTTCGTACTGGTTGAATTCGGTGTCCATGAACACGTACATCGGGTCGGCGAAGTAGGAGTAGGTGCAGTCCTTGCGGTCCAGCACCACCACGTCGAACTTGTCGT # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTACGTGGGGATGAACCG # Alternate repeat : GTGTTCCCCACGCACGTGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 287775-288169 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXOB010000006.1 Chromobacterium violaceum strain RDN09 NODE_6_length_289289_cov_68.514491, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 287775 29 89.7 32 ...........ATG............... GCGCCGGCGTTCGATACGTGCTGTCGATGATT 287836 29 89.7 32 ...........ATG............... TCCTGCGCGTTCAGCTTTTGCAGCAGCGTGCT 287897 29 100.0 32 ............................. CTGTGCGCCAAGTGCCACGCCCTGGCAGTCCA 287958 29 100.0 32 ............................. TGTCACGTGCAACCGTCTTCAACTGGAAGGCC 288019 29 100.0 32 ............................. CGCTGCTACCTTTACCACAAGGCTGGCATCGT 288080 29 100.0 32 ............................. AACTCGGCCATCTCGCCTTCGACGTGATCGAA 288141 29 82.8 0 ....................A...TG.TC | ========== ====== ====== ====== ============================= ================================ ================== 7 29 94.6 32 GTGTTCCCCACGCCCGTGGGGATGAACCG # Left flank : CCTGCTGGCGCAATGGCTGTACAACGTGCCGCCGCTGTTCCACCTGTCCGCCGCCAGCCTCAAGGCCCGCCTGCCGCAGCTGCAATGCGCCGACCGCGCCTTCCGCCCCTTGCACGAGCAACTGGCCACCCAGGCGCTCACCGGCTTTGCCTGGTTGAACGCCGAGCATACGCTGCAGCAAACCCGCTTTGCCGACGGCAGCCGGCTTACCGCCAACTTCGGTCCCGCGCCGGTCCGCTACGATAAGCAAACCCTGCCGCCGCAAAGCCTGCTGGCCGAACTGGCCGGCCAGCCGCCCAGGCTGCTGCCAGTGGCGGATTGCGTCGGCAAGTAAGCGGCGGCGATAATGCCGATGTCGTTTTGCCGGTCATGGCGCGGCGGTTTCCCATGGCCGGCGAGCGGCATTGCCGAGCGATCGAGATGGTGATTTTTTGAGCTGAAAAATCGGTAGATTTTTGGGGTGGGTTTTTGTCTTTAAAAATCAGCATCTTGAAATTGGT # Right flank : CCTGCCCGTCTATCGCTTGCTTAATCCGCGGCCGTCGCGTTGCCCGATGCGCTTGCGATCGACGCGCCGCGGCTTGCCGTCCGAGGAGGGCGCTTCCTATGCTGCAAGAATCGATGTCAGAGGAATCGCCATGCAGCAGTTAAGAGAGAGTGTTCTGGTTGCCGCGCTGTTTCTCGTCGTCGCCGTGGTGTCCAAGACGCTGGCCAGCTCCGTCACGGAGACCGTGCCGGTGTGGCTGGGCAGCGGGGTGACTTTTTCCGCGTTGCTGATTTCTCCGCGCTGGCGCTGGCCGGCCATTCTCGCCGGCGTGTGGCTGGCGTCGGCGATATGGGGGATGTCTGCGCATGGCCTGGGGCTGGCCGGCGCGGCGGCGTTCGCGGGGATAGAGGTGGTCAGCGGAGCCGTCGGCTGCTGGGTGGCCGGACTGGGGCGCAACGATCCGGATTCCCCGATCGGCATGGCCTTGCTTCTTTGCGGCGCGGCGCTGGCGTCCTGCCTGG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCCCGTGGGGATGAACCG # Alternate repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //