Array 1 5582-376 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNJV01000018.1 Xanthomonas oryzae pv. oryzae strain GX6 scaffold18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 5581 31 100.0 34 ............................... GCGTTGGCCGTAGTCCTCCCGTCAATTGTGGTAA 5516 31 100.0 36 ............................... TCGTCTCCGTCTAAGTCAATCCAACTTGTTGGTGCT 5449 31 100.0 35 ............................... TTGATGAAGCCGGCCGGGTGGCCGTCCAGGTGGCC 5383 31 100.0 36 ............................... TGTAATCCTCATTAGTTGGTTGGGTGTGTTGCTGGG 5316 31 100.0 34 ............................... GCCTTAAAGGGGGAGATACATATGTCAATGCTGC 5251 31 100.0 36 ............................... CCGCCAGAGCGCCTTGCCTGCGAACTTTCCGTGGTC 5184 31 100.0 34 ............................... TTGCGATCAACACAGATCTGTGCTCTCCATTTCT 5119 31 100.0 34 ............................... GGCGCCAGCAGCATCAGAATTTATTTGAGGTTGT 5054 31 100.0 36 ............................... AAGCCGTTGCTGTGTCCTCTTCGCCACGATGGCGTA 4987 31 100.0 34 ............................... TGGACATCAAATGGTGAGGCCTTGCGTTTGTGCA 4922 31 100.0 35 ............................... ACCAACAGCACCCACGGCGTCTCCTACAACAATGC 4856 31 100.0 33 ............................... ATTGTCTAGTCTCTCTGTCTCAGTAGTTGGGTA 4792 31 100.0 33 ............................... TCTTGCTCTACACTCAGTAAGTATCTCTCATAT 4728 31 100.0 34 ............................... TGGATACTCTGCAATCTTCAGGAAATCCGTTGGT 4663 31 100.0 33 ............................... GTTGCCGTGCTGCTAAAGGTTAGCTGCACACCG 4599 31 100.0 34 ............................... ACGGTGCGGGCATTGATCCAGGGACAGGCCAATA 4534 31 100.0 33 ............................... AAGGACAGCAAGACGGCCAAGGCGGGTGCATGT 4470 31 100.0 33 ............................... AGTGTCTGCGAGCGTGCTTGCCAATAGGCTAGC 4406 31 100.0 34 ............................... TATACCAACCCCAAAAATGACACTGGTATGGGTG 4341 31 100.0 33 ............................... TCAGGGTGCAGGAGTTTATCTACAAATACCGTA 4277 31 100.0 36 ............................... CTGCCCGAACACTTTGTCGAACCGCCCACTGAGGTG 4210 31 100.0 33 ............................... GGTTTTGAGCGTGAACACGAAAGGTACTGGGGA 4146 31 100.0 36 ............................... TGCAAGTCCGAGCCCTGTGGGTTGATCCCTGAGCCC 4079 31 100.0 34 ............................... GTGCTTATCCTCCGTGGCTCTTCCATAATCACAC 4014 31 100.0 35 ............................... GTGCAGTCACTTGTTGAGAGTGGCAAGCAGACTGA 3948 31 100.0 34 ............................... AATGCCTGCCTCTGCACAGCTGTTGACCGTGGCG 3883 31 100.0 33 ............................... CTAAAAACAAGCTCAGGCTAGAGGGACGGCGGA 3819 31 100.0 35 ............................... AACTGGGCAAGTCCTAAGCAGAGGTCAGCGCTGTT 3753 31 100.0 34 ............................... CACCGTAACACACCCGTCAGGGGATCATAAGCCA 3688 31 100.0 34 ............................... TGGGTGCAGCATTTTTAGGGGATGTTGAGCACAA 3623 31 100.0 36 ............................... TTGGTTGGCGCCTTTGACCTGGCTGCGCAGATCTTT 3556 31 100.0 37 ............................... TCTGCTGCTTTCGGCGTGGATTACAACAGCCTCAGCG 3488 31 100.0 34 ............................... GCGGGCAAGGCGCTGTGGCGGGAATGTCAGAAGG 3423 31 100.0 34 ............................... ACCTTGCAGCCCTTAGCTTTGCAATACCCCTCAT 3358 31 100.0 35 ............................... AGCACTGTGCTTGGCGGTATCGGCGGCGGTGCAGG 3292 31 100.0 34 ............................... GGTGGCAGAGTATATGCAGATATCCCACCCGATT 3227 31 100.0 36 ............................... TTCGGCGTCCCGCCGAGCATGATTGGGCACAGCAGT 3160 31 100.0 36 ............................... TGTTGGTGACGCGCCACCTTCCACGCCCGGTGATGG 3093 31 100.0 34 ............................... GTGCATTACTTCACCAAAGATCGCGCCGACCCCA 3028 31 100.0 34 ............................... ACCTGTGGCGCGTGCGTATCACCGACCGCGACGG 2963 31 100.0 34 ............................... TGACTATGACTCTGTCGCCCTGGCTGCGCCGTAT 2898 31 100.0 34 ............................... CGCCGACTCTAGGGCAATGCGCGTTGCTGGAGGG 2833 31 100.0 35 ............................... AAGCTTGATCTTGTTGGCATAGGACCAGCGCGGAA 2767 31 100.0 34 ............................... TGCTGTTAGGTCCGCAGTTACTGTATACACCTGC 2702 31 100.0 33 ............................... GTCACATTGGTTGATCCATCAGCTCCAGATCCT 2638 31 100.0 34 ............................... CCACGGACAGTGCCGAGCGCAAGGGTATCCCACT 2573 31 100.0 34 ............................... GTCTGGAATACACCACTTACCCGACTCATCCTGC 2508 31 100.0 35 ............................... CTTAATCCCGGAGATGTATACGCCACTTCGCCGGC 2442 31 100.0 35 ............................... CACGCCCGGTGATGGTGATGGCCACGGTGATGACC 2376 31 100.0 36 ............................... GCCTTGCTCATGCCGTTGGCGCTGTAGTCCCCGTAG 2309 31 100.0 34 ............................... ACATCGTTCGACAGGGTGATGGCGTTCGGTTGCA 2244 31 100.0 35 ............................... CGCGCCAAGGGGGCACCTGCCCGCTCCAACTCCTC 2178 31 100.0 35 ............................... TTCGTGCAGCTGGTTGGGTGATCTTCGCCATTGCC 2112 31 100.0 35 ............................... TCACGAATAGGCGCGGTCCAGGGCCACGCAGTGGC 2046 31 100.0 34 ............................... GCCAACGCGAAACCTCTGAAACGTTGCATTGCTG 1981 31 100.0 34 ............................... TCAGCGCGTGTGGAGCGTTATCCGTAGGGGCGCT 1916 31 100.0 36 ............................... CCGACGTTGGCCAGCCTCTACGAAGGCGCTGTAGCC 1849 31 100.0 35 ............................... TAGTTGTGACGATGGATGCTTCTACAATTTCACCA 1783 31 100.0 34 ............................... AGGTGTTGCGCGCTGTCAAAGCGTCTGCACGCGT 1718 31 100.0 36 ............................... ACCAAAGATCGCGCCGACCCCAATAAGCCGGTGGCC 1651 31 100.0 35 ............................... AAGATTGGACCCTCGCTGGTGATGATCGGCGCGGC 1585 31 100.0 35 ............................... ATTTCATGAGCGCGCATGCGCAGATCAGCAAGCAA 1519 31 100.0 36 ............................... GTGATGGTGCTGGAACAGGCGTTGTCGGCTGTGCTG 1452 31 100.0 35 ............................... TAGATCGCCCACAAAGGACCGTGGATATGTGGACA 1386 31 100.0 34 ............................... TTTCGCGGCGTGATCACCTGGTCGGCGATTAACG 1321 31 100.0 33 ............................... TATACGGAGCGTGGAGGGTGATCTTAAGGTTGC 1257 31 100.0 34 ............................... ACCATCTGCGTTTCTGCATCGCTGAAAAGGCCGC 1192 31 100.0 34 ............................... ATCGTGCGGCATTGCCCAACGCCTGATGCGTTGC 1127 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 1061 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 995 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 930 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 865 31 100.0 35 ............................... ACGTTCAAGCCGCTCGCCCTGGGCGACCGGTGGGA 799 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 733 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 668 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 603 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 536 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 471 31 100.0 34 ............................... GAGTGCCCGGGGTCGGTGTCGGCGCAGGCTGGCC 406 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 80 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : CATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //