Array 1 378233-379209 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKST01000003.1 Corynebacterium oculi strain NML 130210 Cocul_contig000003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================================================================================ ================== 378233 29 100.0 32 ............................. TTAGTAGTAACTAAAACGCGACTAGATGATGG 378294 29 100.0 32 ............................. ATGCGTGCTAACGAGTCACAAATCATACAGCA 378355 29 96.6 32 ............................T GCCGGTGGATCGAGATTCGTTGGACTTCGAGG 378416 29 100.0 32 ............................. ACTCCTCACAAAAGCCCCAGATCCCTTCCTGG 378477 29 100.0 32 ............................. GCCTGGTTATTATGCCGGGCGTTTATTTTATG 378538 29 96.6 32 ............................T AACACTGATGTGGTGATGTCCACTCCTGATGA 378599 29 96.6 32 ............................G AGTTCTTCCTCCCCCATCGCCGTCGCTATTGC 378660 29 100.0 32 ............................. AACTGACTTACCTTGCATAGCCGCTTTATCAA 378721 29 96.6 32 ............................T CATTCAAGCTAGTTAAACCAGCCAGAAAGGTG 378782 29 100.0 32 ............................. CAGCAAGGGCACCACCCAAAGCACCCAACGCT 378843 29 100.0 32 ............................. AATCGAGCCTTCAGTGATTCATCCTCCAAGAG 378904 29 96.6 32 ............................G GGCTGGCCTGTGTGGTGGCGCAGCGTCATCGT 378965 29 89.7 188 ..........................TTG TTTCTGTGAGCATGTGATTGTCTAATCTCAAAAGGGTATAGGGAGGAAGTGGCGAAATGAGCGATAAAAAGACCTGGGCGGTGCCGGAGGACGCCCCCCAAACACCAGTATGGAGAGATGTCGATCGGGCTCAGACCTGGGAGGACCTGAAATCTGGGGAGATCAGATCCTCCGGGGAGGATCAGTCC 379182 28 89.7 0 .....-.....................TG | ========== ====== ====== ====== ============================= ============================================================================================================================================================================================ ================== 14 29 97.3 44 GTGTTCCCCGCGCTAGCGGGGATGAGCCC # Left flank : GCAACGCACCGTGGACGAGGTGGCGCGCGAGTACCCCGATGTGACCGTAGAATACAATCACATCGACGCCGCCACCATCTACATGGTGACCAACCCCCAACGCTACGACGTGATCGTGACCGACAACCTCTTCGGAGACATCCTCACCGACCTAGCCGGAGCAATCACCGGAGGAATCGGCCTCGCAGCCTCCGGCAACATCGACGCCTCGGGAGAAAACCCCTCCATGTTCGAACCCGTTCACGGCTCAGCCCCCGACATCGCAGGCAAGGGAATCGCCGACCCCACGGCGGCGATCCTCTCCGTAGCACTCATGCTGCGACACCTGGGAGACGAACAAGGCGCGGAACGCATCGAGAAAGCCGTGGCAGACGATGTAGCACAACGGTCTGAGGATACGGTGACGGCTGAGGTGGGTGACCGGATCGCGGCGGCGGTGTGACGAGGAGAAGTTGTATCTATTTTCCGGTATGCTCTTGGATTAACGCAGTTAATCAAGT # Right flank : GTTAGCTCTCTAGGTGAACTGGTAAAATTTAGGAAAACTTATCAATTTCCTCAGGCGCAAGTAATAGTTCTTTGAACTCCCACTTCAGAATTAATGTGCAGGAATATGATCATAAATCCCCTGTGGTGATTCTCGTCACAAGTATCCCCATTTCTACTTCAATGGTGTAGTGTAAATCCCACTATCCGCGTAACTTTTTGAGGGGGTTCTCCTATGTCCGATGTTCTTCCCATGCCCGATCGCCGCGTGGAAGATCTCCCTGGTCATTGGTTGTTGGCCAGGCTGGGTAAGCGTGTTTTGCGCCCGGGTGGTCGGGAACTCACGGAGAAACTCATTGCTGGGGCCCGTACCGGCGGGGCGGATGTCGTTGAGTTGGCTCCCGGTTTGGGTAAAACTGCGCGTCTGCTGCTTGATACCTCGCCGGCCTCGTATCGGGGTGTTGATGAGGATCCCGAGTCTGTGGCCTTGACCGGGGACGTGGTGGGTGCTGCGGGGGTGGT # Questionable array : NO Score: 4.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-1.16, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 510159-509275 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKST01000002.1 Corynebacterium oculi strain NML 130210 Cocul_contig000002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 510158 29 96.6 32 ............................T CCTTCTCGTGGGTACAACGGCGCGTGGCAGGC 510097 29 96.6 32 ............................G TTCGCGCCAAAGCGATCCACCAGGGCCTTAAG 510036 29 96.6 32 ............................G TCCTCAGCTGCATCAAGCCCGCCCGTGCTGCC 509975 29 100.0 32 ............................. GTTGATATACGTGCGCGTCAACCACGACGGAG 509914 29 96.6 32 ............................G CCGCAAAGAAGAACGCTGTGGCGCAGGGCCGC 509853 29 100.0 32 ............................. ACCTGATCGGCCAACCCGCCATAGTTCTTGAC 509792 29 96.6 32 ............................G GTGAGAGTGGGGAAGAGGAAACCCCAGCGACA 509731 29 96.6 33 ............................A GGTGCCGGTGGCGTTAACGGATACGTCCGGCAA 509669 29 96.6 32 ............................T GCTTGCCCTCGGCGGCAGTATTGCGGCCGTCA 509608 29 100.0 32 ............................. AGATCTACTTGATCCTGGTTCAGGCTTGCGGG 509547 29 100.0 32 ............................. GAGGCGTTCATCTGATCAGCCGTCTGCGGTTG 509486 29 96.6 32 ............................T AGGTAAGCCTGTGAGCGCGGTGACGCGGCGCG 509425 29 100.0 32 ............................. CCTCCTCAACGTCGGCATCAAGCAGTTCACAA 509364 29 100.0 32 ............................. CGAGGACAGGGCGGTGGTCGTATCCCGTAGCC 509303 29 96.6 0 ..C.......................... | ========== ====== ====== ====== ============================= ================================= ================== 15 29 98.0 32 GTGTTCCCCGCGCTAGCGGGGATGAGCCC # Left flank : AGCTCTGGAGCGAGCTAGAGGTGATCGCCGCCGGGGTGAACTGGGGAGAAGTAGAGGAATACCCATGATGATCCTCGTGGTCACTGCGTGTCCTGCGGGCTTGCGTGGCGACCTCACCAAATGGTTACTGGAGATCGCACCCGGAGTATTCGTAGGGCGACCCACCGCGCGACTACGCGACCAACTCTGGGACCACACCGTGGCGCTGGTGAAAGACGGAAGAGCCCTGCTGGTGTACCAGACCAACAACGAACAGGGAATGGAATTTAGGAACCACCGCCACGACTGGCAACCCACAGACTACGAGGGACTGACCCTGATGATGAGGCCGCACACCAAACCGCCGGAGAATCGGAGACGAACGGGGTGGAGCAAGGCGCGGAATATGAGGAGGGCGCGGAGGTAGGTGGGGATCGTGGTTTTTTGGGGAGTGATGGTGTGGGGTGGGGAAGTTATAGCTAGAATGAGGAAACGGCTCTTATTTTTGCTGGTCAGCAAGA # Right flank : GGGAACTTGTGGGTTGACAGGGATTTGTGATCCGCGCGGTGGACACGCTGATTAAGACCACCGATGCGCGGCCCTCCATGAGCAAGCTGGAGTTCGAGGCCCTGGTGACTTTGCTGGTGCAGCAGTACGGGCAGGTAGCGGTGGTCTCAGCGCTCATCGCGTTAGAATCCGGCCGCCTGGAGGCCGGGGCGCGGGATCTCCCGGCCCCGGTGCCCGCCGAGCCGGTGAACATCGAACAGACGCGCTCCACGGCGTCCTGGGCGATCAACCAAGCTGATGGTGATCTTCCTGCGGCGGCGCGCAGACTCGCAGGCCCGGTAGGGAGGATGGTACGCCAGGCGGCGCGGGATACGGTGTGGGAGTCCACGAGGAAAGCCGGAACACGTTATGTGCGGGTGCCGGGCCCCAGAGCGTGTGCGTTCTGCCTCATGCTGGCATCCCGGGGCGCGGTGTATGCCAAAGACACCGTGCTGGCAGTTGGGAAGAAGGCGAAGCGGCCA # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //