Array 1 58342-58191 **** Predicted by CRISPRDetect 2.4 *** >NZ_WQLR01000027.1 Streptomyces solaniscabiei strain N26 NODE_27_length_80834_cov_94.241115, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 58341 29 100.0 32 ............................. GGACCTTAGCGATCACCAGTTACGGCGTCACC 58280 29 100.0 32 ............................. GTCGACCGCAACATCCGCCAGTCGATCCCGAT 58219 29 96.6 0 .............T............... | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CGGCGTCAACCAAGCCGGCCCCGACGACTACGGGGACGGGGTCTGGTGACCGTCATCGTCCTCACCAACTGCCCGGCCGGACTACGCGGCTTCCTCACACGCTGGCTGCTGGAAATCTCCGCCGGCGTGTTCGTGGGCAACCCCTCTGCCCGGATCCGCGACGTGCTCTGGGACGAGGTCCAGCAGTGCGCGGGCCAGGGCCGCGCACTGCTGGCCCACACCACCAACAACGAGCAGGGCTTCACCTTCCGCACCCACGACCACGCCTGGCACCCGACCGACCACGAAGGCATCACCCTGATCCGCCGCCCCGACCCGAACACACCCACCCCCGGCCCAGCACCCAGGAACGGGCCACCACCTGGCTGGAGCAAGGCTGCCAAACGCCGCCGCTTCGGGAGAGGCTGATGGATCAAAGTTCACCTATGTCCCATTTGTCGAAATCAAAGGCAGTGCTCGAAAACCGCCTCAGGCGTTAGCAAACCTGCAGGTCATCCAGT # Right flank : CAGCGCCGGGGGCGGCGGTGAAGCCGAAGCGAGCGCGGGTATCGATGACAAGTCCGGCGGTGGTGGCGGCCTGCTTGCGGGCCTGGGCGCGGATGCGGGGCTGCCAACGCCGGCGTACGGCGTCCTCGAGGCGCTGGGCGAGGTCGGCGCGGGGCCGGCGGATTTGGTCCTTCACGTAGCGCTCGACGGTGCGCTGCGAGACGCCGAGCAGGTCGGCCACGGCGCGGGTGCCCTTGAGCTGCTGGACGAGGTAACGCATCTGCGCGCCGGGCGACTTGGGGATGGGGCGGGTGAAGGCCTGTTGCACGGCGCGGTCGAGGCCGTCTCCGATGATGCCCATGCGGGCTCTCCATTCATGATCGGCTGTGCGGGCCGAACCAGTCCACGGCTTCGCGCAGGAACGCGGCCGCGTCCGGCCAAGCCAGCGGGACGAGACCAGCCGGCACATCACCTGGCGCAGCGTGACACCGTCCGACCGGCGGCCGGCGAGCCGTGCGCGG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 68053-68781 **** Predicted by CRISPRDetect 2.4 *** >NZ_WQLR01000027.1 Streptomyces solaniscabiei strain N26 NODE_27_length_80834_cov_94.241115, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================================================================================================================================================== ================== 68053 29 100.0 32 ............................. GCCACTTGGCGATCGCGCGGTTTCCGGTCTCA 68114 29 100.0 32 ............................. CGGACCCGAATCCAGGTGCCGGCCGAGTACAG 68175 29 100.0 32 ............................. GGCAGCCCAGGGGCGGCGTGTTCGGACCACCC 68236 29 100.0 32 ............................. CATCGTCTCGGAGGGGTACCCCACGATGGCGC 68297 29 100.0 32 ............................. GTCAGACCCACCCCGGCCGCGGCGGAGTCGGC 68358 29 96.6 32 ............................T CTTCACCGGCACCCGGAGCTGATCCCGCAGGT 68419 29 100.0 32 ............................. CGGCGGCACGAACACGTCACCAACGCGGCGTT 68480 29 100.0 32 ............................. GCCGTGAAGGCGAGCCCCTCCATCTCGGTTGT C [68497] 68542 29 93.1 182 .......................A....T GCCAACTACGGTGGTGCCTTGAGGACGCCGTCCGCGCCCGCTGGCAGCCCCACACCCGTGCCCAGGCCCGCAAGCAGGCCGCCACCAGTACTAGCCTGGTCCTAGACACCCGGGCCAGCTTCGGCTTCACCGCAGCACCCGGCACCACCGACGACGCACGCATCCGACACCTCACCCTCGCC 68753 28 69.0 0 ....-..............CCCGCC..TT | A [68767] ========== ====== ====== ====== ============================= ====================================================================================================================================================================================== ================== 10 29 95.9 49 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GCGGGGGTGGCTTTGCCGATGTCGTGCACTCCGGCGAGCCATACGGCCAGAGCGCGGGCGTCCGGCTCGCCCTGCGGCAACGCCTCGGCCACCAGCCTCCGCACCCCTATGGGCAGCCACTGGTCCCACAACAGCCCGGCAACCGCGGCACTGTCCTCCATGTGCCGCCACAACGGCAGCCACCCATCGGTGTCACGGTCGTGCTTGGCCCACACCGACCGTGCCGGCCCCCCGAGCCGACGCAGCAGGCCGACATGGGCATTCCCCCCAATGCTCATGAGGGATTGATACAGGCAGAGCGCCCCTGCGGGCGGCAGAATGAGCAAATAGGATGATCCACAGACAGGGGGCGCTGGCCAGCTACACGGTGTCCGGCTCACCACCCCGATCACTCGGAATCCCTAGCATTTACCGGATGTCATTTAATGTACTTTTTGCCGGAATCTCCAATGCTTGCTGACTTCATGCTTTCCCAGCGCTAAACCTGCAGGCCAGGCAGT # Right flank : TCGACGCCCAGGACCAGGGCGCCGGCGAACAGCAGCTGCGGGCGCTCGCGGCCGAAGCGCTCGGCGAGGTCTACTTCCGCGACGGCGGCCGCCGCGCCACCGGCCTGGGGGTCGAGTTCACGGATGTCGAGCACGTGGAGTTCGACCTGTAGAGCTGGAGTGACGAAGCTCGCTCGTACAGGCGATCATGGTCACCACGGCCACGGCCTTCTCCTCTGCATGCGAGGAAGGTAAGGGCAGTCTCTCGCCCGCCACTGACAACGAGTCACCCCGAAGCCGAGAAGGGACGGGAGGACCGGGCGGCCGGGCAGGAGACGTAACAGCGGATGCGTCGCGCTCCGGCCGCCCGCAGCCTCAGTCACGACGGCTCCCGTACTGGCTTCTAGCTGCCGGCCCATCAGTAAGTGCCGCTAATCTGTGAGTTGTTCTCTTCGCCGAAGCTTGGTAGGGCCGCCGGCGGAGTGCGGGTCTTCACACTTGGGAGGCTGAGCGGACGTGGG # Questionable array : NO Score: 4.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-1.67, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 365795-362057 **** Predicted by CRISPRDetect 2.4 *** >NZ_WQLR01000002.1 Streptomyces solaniscabiei strain N26 NODE_2_length_365820_cov_74.818897, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================== ================== 365794 29 100.0 32 ............................. AACGTCGTGACCGGCGTCGGGTGGGGCTTCGG 365733 29 96.6 32 .............T............... CCCCTTCCGGGTCATGGGTGAACAGAGCAGAG 365672 29 96.6 32 .............T............... CTCACGCCCCACCCGGTCCGGGTCTACGCCGA 365611 29 93.1 32 ...........G.T............... AGCCAGCCGATCGGTGGGATGCCGGGCCGGCG 365550 29 96.6 32 .............T............... GACGAGTGGACCGTGACCCCCTCGGCCCCCGC 365489 29 93.1 32 .............T.A............. CAGCCGCGGCGGACCACCCGGGCGGAGCGCAA 365428 29 96.6 32 .............T............... ACCCACATGACCGAGCCCACCGACAACGCCCC 365367 29 100.0 32 ............................. GGGGGATCGGGGTCCTCCCGGCGGCGCCGTAG 365306 29 96.6 32 .C........................... GTCCCGATCCCGACCGGGGCGAACGTCACCTG 365245 29 96.6 32 .C........................... ATCGCGGCCGAGTTCGACCGGGCCGCGACCGC 365184 29 96.6 32 .C........................... GCTAACGCGGCGAGCACGTGGAAGCTCCGCAT 365123 29 89.7 32 .C.........GT................ TCGTCGACCAGGGCGGCGAGGATCGCCCCGTC 365062 29 96.6 32 ...........G................. CCTTCTTGGGGTTCAGGTTCGAGACGAGCCGG 365001 29 96.6 32 ...........G................. TGGTTGGGCATGGGGAGGGTGAGGCCGTTGAC 364940 29 96.6 32 ...........G................. AACCTGCCCCGCGCGGACCACTGGGATGCCCG 364879 29 100.0 32 ............................. GACGGCGACGTGACGCTGACCGTGCAGCCCGC 364818 29 100.0 32 ............................. GCCTGCCGGGGCGTGGCCGCCTGCGCGACGAC AC [364807] 364755 29 96.6 32 .............A............... TGGATGTACCAGCTCTTCGACGTCATGCAGGG 364694 29 96.6 32 .........A................... TGCTCCGCGCCCTCTTCCTCGAAGGACTCGAA 364633 27 89.7 32 ....C...........--........... TCACCCGACGTGATCTTGCAGCCGAGGAACGT 364574 29 96.6 32 ...............A............. GCGGCCCGCATCTGGGCGAGGATGCCGGACAC 364513 29 100.0 32 ............................. AGGGTGTCCATTGCCTCGTCGCCGTTCTTGGC 364452 29 100.0 32 ............................. GAGACGCTCGCCGTGGAGATGTGCCAGGTGTG 364391 29 89.7 32 .........A.G...........C..... GAGATCCCCAGGTCGCAGTGCTCGCAGAAGAC 364330 29 100.0 32 ............................. TACGTGGCCCGGGACAGCGACGGGGCCCGGTG ACCC [364321] 364265 29 89.7 39 ..........................GGA TGGTCCCGCCGCCGGCGCCACCGCCTCCGATGCCGATAT 364197 28 89.7 32 ........T.....-..........C... ATCGCCAAGGTGTCAAGGCATACGGTGGTCCA 364137 29 96.6 32 ..A.......................... AAGTGGGACTCCAACTGGCAGGCCGGCCACCC 364076 29 96.6 33 ...T......................... GTCACCCAGCACTCCTACGACCCGCTACGCCGC 364014 29 93.1 32 ..........G...T.............. TGCTCCAGGTTCGTGCCCCAGAAACGCTGGCT 363953 29 100.0 32 ............................. ATTTCCCGCAGTGCCCGGTCGAGTTCGTACTG 363892 29 100.0 32 ............................. GGGTTCGTCCGGGTGTCGGCCTGGTAGCCCGC 363831 29 100.0 32 ............................. CTCGTCGTGTACGTGCGCGGCGTCATACGGGA 363770 29 96.6 32 ..............T.............. CCCGAGCACGCGACGGAGGTGACGCTCGATGA 363709 29 100.0 32 ............................. GAGGAGCGCCGCGACCTCGCCCTGGCCACGGC 363648 29 96.6 32 ......T...................... GCGGATCTCAACGGGGCCCGTAAGGGGGCGTC 363587 29 86.2 39 .......T..................GGA TGGTCCCGCCGCCGGCGCCACCGCCTCCGATGCCGACAT 363519 29 89.7 31 ........T................C..A TCGCCAAGCTGTCGAGGAATACGGTGGTCCA 363459 29 89.7 32 ..A.................A..T..... ACCGATCCCCGCGACAATGGCCTGTACGTCAC 363398 29 96.6 32 T............................ AGGCGCAGGAAGAACGTCTTGCCCTGCCTGGG 363337 29 96.6 32 .........A................... GGCTCCAGGTCGCCGCCACTCTTGCCGTTGGC 363276 28 93.1 32 .C.......-................... CGAGGGGAGCAACCACCCAAAACAGGCGGGCC 363216 29 100.0 32 ............................. GACAACGGCAACTTCCAGTACCGGATCGTCCA 363155 29 100.0 32 ............................. CTGAGGCGGGGTACGCGAGTCGTACCTAGCAA 363094 29 96.6 32 .................A........... TGGTGCCACCGACACAACTGCCCTATGGGGCA 363033 29 96.6 32 ...........G................. GACGAAGCCGCCATGCAGGGCATCCACGGCAC 362972 29 86.2 32 ...............T.A.........TT GTCGCCGCGGCGCCGAACAGCAGTACCTCCCG 362911 29 86.2 40 ....C.........G..A.......C... TCGAGGCTGGACAAGGTCGTGTCGCTGGACGTCTGCTCCC 362842 27 93.1 32 .............--.............. CAGACGCCGTCCTCCGTGCGCAGCCACCGGAT 362783 28 96.6 32 .....-....................... GGCACGGAAGGTGCTCGGACTGCCGGACCCCG 362723 29 96.6 32 ...............A............. TCGTCGGCCATCATCAGGGCGGGGATGCTGTC 362662 29 93.1 32 ........T........A........... ATCTTGTACGGCGCCGTCTCCGCCAGGGCGGG 362601 29 93.1 20 A.................A.......... GCAAGATCCGCTCGCCGGGT Deletion [362553] 362552 29 89.7 32 T................A.......C... CCTCCGTCCAGGTCGCGGCGGTTCTGGTACAA 362491 29 96.6 82 ............................T ACCCCGCCCCGTACCCGGCCACGGCGATTCCGGCCGCATGCTCCCGTCCCTCGTAGCGGGTCGCCACGTGGGCCAGGCCGGT 362380 29 89.7 32 ..............TTG............ GACGACGGACTCATGCGCGAGTCGCGGGCGAT C [362375] 362318 29 96.6 32 ............G................ GACGGGGACCGGTCGGCCTGGTCGCCCCTGGT 362257 27 82.8 28 T...........A......A.--...... GGGGAACAGAAGGTACTTTGAGCGCTGC 362201 29 75.9 23 ACT..G.....G..........C..C... GTCCGACGGCAGGAGATCGCGTT GGCC [362176] Deletion [362150] 362145 29 89.7 31 GC...............A........... GGCCGGATCTACGGCTGGGGGCCCAGGCCGC 362085 29 93.1 0 .........A..............C.... | ========== ====== ====== ====== ============================= ================================================================================== ================== 61 29 94.7 33 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : TAGCGATCACCAGTTACGGCGTCAC # Right flank : TGGTTGAGCGTGATGTCGGCGCCCTCGGAGGGGGCTGGGGGAGGAGGTATCCACCTCCTCCGGGGGGTGTGGGGGGTGCGAAGCGGATCGCGGGTTTTCCGCATTCCGGCTGTGACCAGGCGAAACGCGGGTTTCCCGCGATCCGGAGGGCTGGGAATCGCGGATTTCCCGCACTTCGGTGCTGACCTGCTGTGATGCCGCGATGCCGAGATCGACGTACTGCTCGTTGTTCGCCGGGTTCCGGTAGACCCGGGTCACCCAGGTCGGGCGCTGCGTGGCTTCGTCGTAGAACGAGACGCGGCTTCGACCGCCGGATACGGGCGGTGTACCTGCGGCGGAGTGCGGGCGGCATGTATCCGTTGGCCGCAGGGGCCTGTCGGCCCCGTGGCCGCCCCGGGAGCGGGCGCGGCGCGCGGCCGGGCGGCGGGCGTACCGCGCCGGGCGATGAGGGCGCGGCAGAACGCGACAGGCTGGGCGCGGCGGCTGCAGCGCGGCGCGGT # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:-0.07, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [60-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //