Array 1 166340-165046 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZYP01000014.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 KO STM2831 BCW_8424_1__paired__contig_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 166339 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 166277 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 166216 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 166155 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 166094 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 166033 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 165972 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 165911 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 165850 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 165789 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 165728 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 165667 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 165606 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 165544 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 165441 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 165380 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 165319 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 165258 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 165197 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 165136 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 165075 29 96.6 0 A............................ | A [165048] ========== ====== ====== ====== ============================= ========================================================================== ================== 21 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGTGTGTTCCCCGCGCCAGCGGGGATAAACCGTGAGCAACGACAGTAAATAATTTTTCGTGCTGGTGTTCCCCGCGCCAGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCAGCGGGGATAAACCGCAACCAGGCTGGATCGTAACTCCTATCCCCTC # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 184642-182661 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZYP01000014.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 KO STM2831 BCW_8424_1__paired__contig_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 184641 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 184580 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 184519 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 184458 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 184397 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 184336 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 184275 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 184214 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 184153 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 184092 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 184031 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 183970 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 183909 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 183848 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 183787 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 183726 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 183665 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 183604 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 183543 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 183482 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 183421 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 183360 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 183299 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 183238 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 183176 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 183115 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 183054 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 182993 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 182932 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 182871 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 182810 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 182749 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 182688 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //