Array 1 5828-6100 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIBZP010000021.1 Klebsiella pneumoniae strain SDWK38 NODE_21_length_92456_cov_11.8257, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5828 29 96.6 32 A............................ TAAAACGCGTCGCGGTCATATGCAGCAATAAC 5889 29 100.0 32 ............................. AGGAGGAGACGGCCAAAAATACTCCGCTGAAT 5950 29 100.0 32 ............................. GGCTGGCGAACGCTCAAGGCTGGTGGAGTGAA 6011 29 96.6 32 ..............C.............. ATACTGATACTAAAACGGGATTTTCGTTGTTT 6072 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.0 32 CGTGTTTCCCCTGCGTGCGGGGGTTATCG # Left flank : TGGGGGGCGGCGATCAGGTTTTTACTCAAAATGGGTTTTACGGTCGGCCTTGTAGGGTATCCCGCTGTAGGTAAGTCATACCTGCTCGCCCGGACACTGCCAGAAGGTATTATTGACGGTCGAGAGCTGGTGGAGAAGAACAACTGGGAAACGCCGGTGCCATTCCCTTCCGACAAGATCCCGTCCGGGCCTGTAGGCCTTGATGAAGGAAATGTGTTCGGGAGTCAGGCTTTGTTATCGGTAGCGGCGACCCTGAAAAAATGCGGTGTCGTGTTTACTGCTCAACGTCTGAAAAATGCAGAGAGCCTCGCGGCAAGTTTAATGGCGCGGCATGTGCTGATTTTTTATATCGGTGAGTATGAGTCTTTTAAGTTTGAAGTTGCGGCACAGTATGATCGGCGCAGAAAATCCTGAACCTGCGGAGGTGATTTTTACGCCTCAGAATCTGGTGGAAAATGAATGAATAGAATTTGCATTTGTAATCAATAGGATATAGTTAG # Right flank : TGGGCTATATCGAACGCGTTACTGGGGAGTGATTTTCAGAAGAAAACATTCGCTCGCAAAACACCTACAGCTAAAACCGGTTCGCCGGTTTTTTTTGTGCCTGCGGTATTCGGCATATCTTTTGCGGCAGGGATAATACATCCCTGCGAAACTATTTAAAGAAGGTGACGATAATGACTCAGGTTCAGAAAGGTAAAACGGTTCCCGTTCGGCCACCAGCGACGTATTTCAGCTATAGCCCCGACGACGGGTATGAGGAACATGACTCGCCGGAGAAGGCAAAGGCAGCGGCAGACGCTGCGATTGATGCTTATCGGGGTGAAGCATGTGATGGCTGGTCTGATGAAGTGACCGGCGTTACGTGGGGTGTGGTGGCACAACGAGCGACAAAGTTTGGCGAGCGTAAGCGCACCAATGAAGACGCGCATCTTTCTCCAGAAATTCAAACGGTCTGTGACTACTATCTTGCGCCGGAAGTGACCGTACCAGCCTCACTCCCC # Questionable array : NO Score: 2.88 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTGTTTCCCCTGCGTGCGGGGGTTATCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.60,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 44224-45099 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIBZP010000021.1 Klebsiella pneumoniae strain SDWK38 NODE_21_length_92456_cov_11.8257, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 44224 28 96.4 33 ............T............... GAAACTTTTTTCGCTGTCTGTTCTGTCTACCGC 44285 28 96.4 33 ............T............... GATTATCCCGGAGTCTTTGTAATTCACGGACTG 44346 28 96.4 33 ............T............... ATCGGCGCCTGCGATTAGCAATGGCAAAAATGC 44407 26 92.9 33 ...............--........... GCGGTGGGCGAACGTGCCGGGAGTGGTGGCCTT 44466 28 96.4 33 .......................C.... GTTATCTAATCTTCCAGTTTGTGGTGATTTAGC 44527 28 100.0 33 ............................ GGAAAAAACAGGACACTTTTGGAGGGTAAAAAA 44588 26 89.3 33 ............T..--........... GGGAACAACGGACTGAGAATAACGCATAATGGC 44647 28 100.0 33 ............................ GTTCCTGTTTGGCTTCGCGATTATTTCCACCTT 44708 26 82.1 33 ............TT.--.........T. GCTTGTCCGCAATCCGGCGTTTCATCGCCGTTA 44767 28 89.3 33 ..........G..T...A.......... AGGATGGATGTCCTGCGAAATTACAGCGTGACA 44828 28 96.4 33 ............T............... GAGAGCTTGGCGGAGCCATTGTTGATGATTTGA 44889 28 100.0 33 ............................ GGGAGGCTCGTAATCTGTTGCAAACTTCTTTAG 44950 28 100.0 33 ............................ GAGCTGCATAGTTATATCCTGTGTTATTAACTA 45011 28 92.9 33 ...........AA............... CGTGGTTAAGCCCTGACTGCTCGCGGCTGTAAA 45072 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 15 28 95.2 33 GTGTTTCCCCTGCGTGCGGGGGTTATCG # Left flank : TAAAGATACAAAGGCGGATTTGCAGAAAAAAGTTAACGAACTGGATGAAAAAATTCAGTCTCGTAAGGATGAAAAATCCGAAGCCCGTGAGTCCATTCGTCGTCCTATTGACCCCTATGAAGCATTCATAGCCGGGGCTGAACTGAATCACCGAATGAGCATTAAAAATGCCACTGACGAAGAAGCAGGCCTGTTTATTTCTGCGCTTGTTCGTTTCGCTTCTGAACCGCGTCTCGGCGGTCATGCGAATCACAACTGCGGGCTGGTGGAAGCAAACTGGAGCGTCACGACATGGAAGCCGGGTGAACTCACGCCAGTCACCCTCGGCGAGATCAGTATTAGCCCTAGCGGTGTAAAAATCGAAGGTGAAGAGCTGTCCGCTATGGTCGCTGCTTTTGCAAAGGCAGATGGATTTGATTTTAAAGCCCGGTGATGCATAATTTCTCGGTAGGAAAAATATGAACTATTTTTCCTTTTTATATCAATGCAATATGATTAGA # Right flank : GGCATTTTACGCGATGGTTGAAGAAGCTTGTTGAATGTTTCCCCTGCGTGGGGTTATCGAGAGACGCAAACACGGCACTACAGCAACGAGAGGTATTTTCCCTTCTTCGCGGGGTTAACGATGTTGTGGGCGAAGGAATATGCCATCAATAGCATTCCCCTTCTGGGGGTTAACGGGCCGTAAGAAATGCAAGTATTGATACATCCCCTTTTTTGGGGTAAACGCATGGTAAAAATGAATAGGATTTTTTAGCGAGAAAATCAGAATAGGATTTAGCAAAACAGTTTTATTGCTACAAATACCCTTGTTGGTTAAAATACATACTGTATAAACCAACAGGGGTATCCGTTATGGATTTAAGAAAGACATTTGAACAACTTACCGACGAACTGCTTGCGCTGAAAAAGTTGATCAGCGAAAGCTCGCCGTTGTTTGCTCGTGTCTCGGTAATCCCCCCGGTTTTGCGCGGCGCGGAGAATGAGCCTGTTAATGAGATTGTT # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTTCCCCTGCGTGCGGGGGTTATCG # Alternate repeat : GTGTTTCCCCTGTGTGCGGGGGTTATCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.60,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //