Array 1 793-3226 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTHA01000011.1 Streptomyces sp. or20 scaffold11.1.size145372, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 793 29 100.0 32 ............................. GCAGCCCACCCACACCGCGAAAGGCACCGAAA 854 29 100.0 32 ............................. CACCGCCTACTCCGCCAGGGCCGGGGCGGTGG 915 29 100.0 32 ............................. CCGTCCGGCCCATTCACTCTTCCGCCTGGTCA 976 29 100.0 32 ............................. GGATCGAATGGTGTCGGGTTACGTCTGGGCCA 1037 29 100.0 32 ............................. GAGGAGCGGGTCGACCTCAGGGGTGGGGGTGC 1098 29 100.0 32 ............................. TCGACTAGGTCGCCGTCGCGCTCGATGCGGAA 1159 29 100.0 32 ............................. GTCACCAAGACCGGCGGCCACACCGCCGAGAT 1220 29 100.0 32 ............................. TCAGACGCTCCGCGTATCCGGTGACCAGCGCA 1281 29 100.0 32 ............................. AACGAGTGCGTCGAGGTCGCCGTCGCCTGCGC 1342 29 100.0 32 ............................. GCCGCGTCGGCGACCGCGTGGACCGGCTCACC 1403 29 100.0 32 ............................. TGCCAGGCCCCCCGGGGCGAGGGAGGAGAGCA 1464 29 100.0 32 ............................. ACCACCGAGAGGAAAGCCATGTTCCGTCGCCC 1525 29 100.0 32 ............................. GCGGGAACCGGGAACGCCTGGCCCGTCATCCG 1586 29 100.0 32 ............................. TTCTGGCACGGCCTGGAGGCGTACTCGGCCCA 1647 29 100.0 32 ............................. GCCACAGCAGCCGGCACCGGATGGTGGTGCGG 1708 29 100.0 32 ............................. CGGTTCGCGCTCCAGCTCCAGACGTGGCTCCA 1769 29 100.0 32 ............................. GCGCGAGTCGCATCGTTCGGCAGACGCCCGGA 1830 29 100.0 32 ............................. GGGGATGCCCGTGTCGGCATCCTCTCCGGTCG 1891 29 96.6 32 .................A........... CCCAAGTCGGGTTCGGTGGCCCGGTAGAGGAG 1952 29 100.0 32 ............................. ACCACCGAAGGACAAGCGCCATGAACACCACC 2013 29 100.0 32 ............................. GACACGAAGATCAGCACCGCCCCCCAGACCAA 2074 29 100.0 32 ............................. CCGTGACAGACGGGTGACGACGACGTGTCGCT 2135 29 100.0 32 ............................. ATCCGTACCGCCGGATCGCCGAGGCCCTCCGC 2196 29 96.6 32 ...........A................. TGGAGCGGGATCCGGAGCACGAAGCCGGCCGA 2257 28 93.1 26 ...........A.........-....... CCGGTGTGGTCGTGCCCGAAGTACGG CCC [2280] 2314 29 86.2 31 .........A...A..T......A..... GCAACCACAACCCCGCGCTCCGCACCCTGCT 2374 28 89.7 0 ......A..................A..- - Deletion [2401] 2405 29 89.7 33 ............GG...........C... AGGAGCACGTGGGTAGTGCGCGTGCCAGCCGTT 2467 29 86.2 32 ....CTG.......A.............. CGCTGGCCAGAGAGAGGGTCGGGGCCTGCAAG 2528 29 100.0 32 ............................. TCCCGGCGGACCGCGACACCGTGGATCTGCGG 2589 29 96.6 32 ...........A................. GCCATCGGCCGCATGGAGCAGCGTCCGTTCCA 2650 29 100.0 32 ............................. CAACTGGTCGACCAGGCGCAGCACCTGTCCGG 2711 29 96.6 32 ..............T.............. GTCGACTACTGGGGCGTCTCCACGACGTTCAC 2772 29 96.6 32 ......T...................... CTCGCGGCTGACCGGCTCGCGGTCCCTGGCCT 2833 29 96.6 32 ....................A........ AGGCCGTCCCACCCGGCGGAGACACCGCCGAG 2894 29 93.1 32 ...........A.....A........... GACGCGGTCAGCATGCCGCCGACCTCACACGA 2955 29 93.1 32 .........T.A................. GCGCGCTGATCGAGACGTGGGGACTCACCTGG 3016 29 89.7 32 ..............T.....A.......T TGGCACACCGCGGTGTCGCACTGCGCGCCGCC 3077 29 89.7 32 ..A..........GT.............. GAGCGCCAGGCGGCCCGAGCCCGTAAACCGAA 3138 28 79.3 31 ........G....AT..-.C........T CCCGCCAGGTTTACGTGCCTTCGGCCTGGTC 3197 29 82.8 0 ...........A.GT..A.......G... | A [3199] ========== ====== ====== ====== ============================= ================================= ================== 41 29 96.4 31 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : CGTCGTAGATACCCAGGAAGTCCGCGGGCCCAACGGCACGCTTTAGCACGCCCCGGATCATGGCTTCGCGCTCTTCCNGCCGCGCCCACGGCTCGCTCGCCGTCGTAGATACCCAGGAAGTCCGCGGGCCCAACGGCACGCTTTAGCACGCCCCGGATCATGGCTTCGCGCTCTTCCCGTGCTGCCTCGTCCAGTTCATCGGCGAAGTCGGCCGCGGTGTCGTTGTCGAAGGGGCCGATGTCCCAGGTGCCCATGCCTCTCCTCGCGCGGTCGTCTGGGGATCGTCGCACTGACCACTGACAGTGCACTCAGGAGGCTCCCAGGATTAGCGCGGGTACCCATCGTAGAGGCGCGATTACCTGGCGGGACCAGAACTGTTCGCCGGGTGCTGGGGATAGCCTTGTCGTCACGGCAGGAGGAAGCTGATGGTCGATATGTCGGATTCGGTGAAAGTGCTCGAGAATCACGCGTTCCCGCTGTAACGCTGCAGGTCAGGAAGT # Right flank : CACCCGACCGAGCCCGAGTACGAACCTGCCCTGCCCCCCTGTGCTCTTTGGCCGAGTCGCCGCAGGCCCGCTCACGGACTCCTCCCCGCATTAGGGAGTGAGAGCCCGATGGATTCCCGCGTTCTACAGGTCGAGTACCGCCCACATCCTGCGGCCGTCTTCTGCGGTGTCCGTTCCACACGAGACCGCGCCCAGGCTGGTCAGTTCCGCCAGGACGGCTGTGTCCGCGACCGCGAGACCTGGCCGGTGGGACAGAGCGACGATCAGCGCCCGGGTCATGTGTGGGCCACCGTTGCGTGTCCGGGACACCTGGCGGCAGGATCTTCAGGCAGACCACGGTGCCCGGGCCGGCCGCGGCGTTGAGGCGGGCGACGGTCTGCCGCTGGTGGAGGGCGAGCTGGGTGCGGTAGGCCGGTGAACAGGGCCGCAGGTGCAGCGTTCGGGTGGCGTCGTCGTACCGGACAGCCTGGACCTTCCCGGTCAGCTCCGGGGCGACATGC # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.06, 8:1, 9:0.94, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-36] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5762-4270 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTHA01000130.1 Streptomyces sp. or20 scaffold130.1.size19225, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5761 29 100.0 32 ............................. TGGCCCAACACGCACCCCGACGCCTTCCGCGC 5700 29 100.0 32 ............................. CACTTCATCGTAGAGATCGATCTCCAGCAGGT 5639 29 100.0 32 ............................. ACCGAGCGGGGCCACGTCCGGCAGTTCGGCCG 5578 29 100.0 32 ............................. GCGGGCGCGCGTGTGCGCCGGCCACCGCCCGG 5517 29 100.0 32 ............................. GTCAGCAGCCCGGTTGTCTCCTGGCCCTTGAG 5456 29 100.0 32 ............................. GGCGGGCCCAACGTGGGGGTACGGCGGCTGGT 5395 29 100.0 32 ............................. TCCCGGCCCGACAAGGTGCGCACCGCCGTCCG 5334 29 100.0 32 ............................. GCCATGCGGTACGTCGTCGAGGACGTCACGCC 5273 29 100.0 32 ............................. TCATCGGCCAGGGTGCCGATGCCAGGAAACGT 5212 29 100.0 32 ............................. GAAGCAGTCAACCGGGCGCAGAACCTGTGCAT 5151 29 100.0 32 ............................. GGCACCGACGTGGTCACCGCACCCGGCTGCGC 5090 29 100.0 32 ............................. AGCCTCGGTCTGTCGGGCCGGAACATGCTGGA 5029 29 100.0 32 ............................. GGGTCGGGGAAGTCCGCATCGCCCTGCGTCCT 4968 29 96.6 32 .................A........... CCCTGGGCCATGGCGTGTGCGGCCAGGGTGCC 4907 29 100.0 32 ............................. CGTGCTCGCGCCTACGATGTCCACGCCGTTGA 4846 29 93.1 32 ......T.....................T TCGTCGTCAGGCTCGGCAGTACGGGCGGCCTC 4785 29 100.0 32 ............................. GCCCGCAGCACGGACTCCAGCCGGGACATCCG 4724 29 100.0 32 ............................. GCCGGTCTGCGGGGTGGCGTAGAGGACCAGCA 4663 29 100.0 32 ............................. AAGGACTGGGGACTCAAGCCCGGTCAGGAGGG 4602 29 100.0 32 ............................. GGCCCGAAGCGGCTCCGGTGCTGACACACCGG 4541 29 100.0 31 ............................. AGCCGCTGCAGCACGGCCCCGTTCTCGCGCC 4481 29 100.0 32 ............................. CGTGATCACCATCGTCGGCAACCTTGTCGACG 4420 29 100.0 32 ............................. AACCCCATGGCCTGAGCCGCGAGCTGCTCCTC 4359 29 100.0 32 ............................. GGAAACGGTGACCATGCGTATCTGGCCAGGCT 4298 29 93.1 0 ..........................TT. | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.3 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : GAGCGACAGAGGCCTGCACGTGGCGGCCGGAGTGAACTACGGAACGGACGAGCAAGAGGCAGCAATCTGGTGACCGTGATCGTCCTCACCAACTGCCCTCCGGGCCTGCGGGGCTTCCTCACTCGATGGCTCCTGGAGATCTCCGCCGGCGTGTTCATCGGCAATCCTTCATCCCGCATCCGAGACGTGCTGTGGTACGAAGTCCAGCAGTACGCCGGACAAGGACGTGCGCTTCTCGCCCACACGACCAACAACGAGCAGGGCTTCACGTTCCGTACCCACGACCACACCTGGCACCCCACCGACCACGAAGGCCTCACTCTGATCCAGCGCCCCAACGACAGCAAGGGCTCAACGAGTAGCGCTAGGAAGCCAGGGTGGAGCGCAGCATCCAAGCGCCGCCGCTTCGGAAAGAGGTAGGCGGAATGTCTCATGTGTCGGAATCGGTGAAAGTGCTCGAGAAACTGATGAACCCACGGTAAACCTGCAGGTCATCGAGT # Right flank : AGGTGGTGGAGATGACTGCGGACGGCCCCGGGCGACGGCTGTGCCGTGGGTGCGGCGGTCCGTTGCTGCCGTCGACGGCGATGGCAGCAACGGCGTTCTGCTCGTTCGCGTCCTACCCGCTGTTCCCCGCCGCCGCAGTTGCCGCCTCCGGAGCGGCAGCGGCCATTATGGGCAGGGCTTGGGCGTACGCCCGCCCGCGCGAGGTGGCCGTTCTTGTCGTACCGGGGTCGGACGCCGCGGTTGTGTGGCATCAGGAGCTTGGACCCGGTGGGGTGTTCAGGCTTCGTGGGACCGGTAGCGTGCCGCTACGGCGGAGATCCACATCATCGCGGTGATCGCGCCGATCGCCAGTGTGAGGGTCCCGGCGGTGCCTCCGCTCATTGCCCAGCCGTTGCCGAGCAACAGTGCGGTCGCGGCGGCGCGGGAGGCGATCGCCCGTCCCCGCTCTGCGGTGCGGGAGAAGTGCCGGCCGAGCACGTAGTTGGCGGCGATCAGTGAGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 15393-16238 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTHA01000130.1 Streptomyces sp. or20 scaffold130.1.size19225, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================================================================================================================================================== ================== 15393 29 100.0 32 ............................. AACACTCTGTTGTAAGAGGTTGATGTGAGCGA 15454 29 100.0 32 ............................. TACGACGGCCCCCGGCCGGTGCGGACGCTCTG 15515 29 100.0 32 ............................. AAGAGCGGCTACGGGTCCTCCGCCGTCGGTGT 15576 29 96.6 33 ........................G.... GACCTCGCGCAGCCCGTCGGCGACACCGACGCG 15638 29 93.1 32 ........................GT... ACCACCGCCTCCACCGGGGTTCTTCCCAAGCT 15699 27 82.8 32 ...........G..--........GT... TGCACACGGCCGGCGTCGCCGGTGCCGGCCGC 15758 29 86.2 30 G..........G.....A......T.... CGAGGTCGACGCCGCTCTCGCGCTGGTCGG G [15780] 15818 29 75.9 32 ...........G.GT..CT.....GT... GACCCCTACGCCATGGGCTTCACCACCAGCCA 15879 29 89.7 32 .............GT.........G.... TCGCGAAGGACCCCAAGGACCCCGAGCCGGCT 15940 29 82.8 31 ...T.......G..T..A......G.... GTCTGCAATCCCGGATGGTTGTACGGACCGA 16000 29 79.3 181 ..A....A...G............GT..A CGGCGGGGTCCGGAGCCGGAGAGCGCGGCCGTCTGCTCGCTTACGGGGCTCAAGTAGTAGCAATTCTCGCTGATTGCGCACTGAAGGTGAGCGGAAGTGAGCAGGATGCGCCTAATGGTGGGCAAGGTGGGCTTCTGCAACACGGATGGCATAGACGATCAGTTACATCTCTCACTACTCA 16210 29 69.0 0 A..G....T...TAGC.A.......T... | ========== ====== ====== ====== ============================= ===================================================================================================================================================================================== ================== 12 29 88.0 45 CTGCTCCCCGCACCCGCGGGGATGACCCC # Left flank : CGTCGCCTTCCCGATGTCATGCACCCCAGCCAGCCACACGACCAGTTGCCGGGCATCCTCCACCCCGCCGGGCAACGGCCCCGCGATCACATCCCGAACCTGCTCAGGAAGCCACTCGTCCCACAACAGCCCCGCCACAGCGGCACTGTCCTCCATGTGCCGCCACAACGGCAGCCAACCCTCCGTATCCCGGTCGTGCTTCGCCCACACCCGCCGAACAGCACCCTGCAGCCGCCCCCCAAGGCCCGAACAGGCCCCACCCTCATCAGCCATGTCAGATAAATACAGGCAAACAACTGAACAACACGCCCTGATCAGAAAATCTGATGCTTTTCCATCGACCACACCACGTCAACTGACAACCCGCCGTAAAATGCGCCAACGTCATTCGCGACCCAACACAACAGGCAACAGAAAAATGCCGAAATAGTCTATATGTCGGAATCGGTGAAAGTGTGTGAGATCTCGACCCTCCCGCTGTAACGCTGCAGGTCAGGAAG # Right flank : CACGGAGGGCATCGCAAGTGCTTGCTCCCTGCGCACGCAGGGGTTTTCCGAAGTTCAGCCGTTCCTCGACAGCCCGACATCATCAGCAAGCATGCGTGGACGCGCCACAGGCAGGCATGATGCTGAGTAGCTCAGTCGCTGAGATGGACGGAAGCAGGCTTCATGACGAGTGCACCGGACTACAGCCAAGGCGTTGATGCCGAACGCGCGTTGAAGTTCGCTGTTCAGCGCATCCGTGGAGACCGTGTCCAAATCATCGAGGGGATCATCGAGCCTGTGTCACCGACCTGGGATCACGAGCGCGCTGCGAAGCTCGTCCGTCGGCAGATCGAAGATCGGGTAGATGATCTTGGGTGTGTCGAAGACTCTGGAAACTTGGATCTCCCGGGGTCGTCCAACTGGTACGTCCCAGACATCGCCGTGGTCCCCGAGGACCTTGCGAGAGGCGGAGGCGCACTGCTCCCGGACCAGACCCTGCTGATCGTAGAGGTGACTTCAGA # Questionable array : NO Score: 3.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.40, 5:0, 6:0.25, 7:-1.32, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-30] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 17091-19083 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTHA01000130.1 Streptomyces sp. or20 scaffold130.1.size19225, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================================== ================== 17091 29 86.2 34 ..............T......G.A.C... CCAAGGGCACCGTGTCGCGTGAGGTCAAGGCGCT C,G [17101,17119] 17156 29 89.7 32 ...........C.....A..A........ ACCCTTGATCAGGAACCGGAGCCGGGCCCACG 17217 29 100.0 32 ............................. TACGCGGCTGAGGCCGAAGCCTCCATCGTGTA 17278 26 89.7 32 ..............---............ GGGGACCAGGTCAACACTCTTGGTCTTGGCGT 17336 29 93.1 32 ...........G....T............ CCGGGGAACTTCTTGACCATGACGACCGCCGC 17397 29 93.1 32 ...........G.....A........... GAGTCCGTGCAGCCGTACCAGCGAATCGCTCG 17458 29 93.1 32 ..............T..A........... CAGACCCCGGCCGCGCCGCGCACCGTGGCGTC 17519 29 89.7 32 ...........G.GT.............. GGGTCGCCCCACTTGTGGGCCCAGATCACCGG 17580 29 86.2 32 ...........G.GT.........T.... GCGCCCGCCCGGCCCACGGCGTCGAGCACGTG 17641 29 86.2 32 ........A....GT.............A CTCCACGATCATCACGCCGTTCCCTCGGATGA 17702 29 93.1 32 .............GT.............. GCATCGGCCGTCTTCACGGCGAGAACGTAGGC 17763 29 100.0 32 ............................. CACCCGCACATCGCGGACAGCGTGCTGAAGGT 17824 29 89.7 31 ...........G.....A....C...... CGGCGGTGATCTCCGTCATGCCGGATCCGGT 17884 29 100.0 32 ............................. TTCTTCCTCAACTCCGCCGAGCCCGGCGGGAT 17945 29 86.2 84 .........A.G.A..T............ GACTTCGCCCTGAACAACTGATGGGCTGCCGGCTGCTCCCCGCGCCGGTCCCGGTCCAACAAGTACAGAAACCCCGCGAGGGGC 18058 28 79.3 29 ....-......G.A..T....G..A.... AGCATCACGGCGGCTGGGCAGACCGGTGT 18115 29 89.7 32 ...........G.....A.......C... CATGCTTCGACGTCCAGCGCGAGGCGCTGCTG 18176 29 89.7 32 ...........T.GT.............. ATGCCGACCGGAACGTCCAGGCTCGGCGTCTC 18237 29 86.2 32 ...........GT....A...G....... CACCACCCCGGAGGACAGCAGTACGTGGACAT 18298 29 82.8 32 .........A.G.A..T........C... ACCCGGAAGTTGGACCGCGAGATCGCGGCCAC 18359 29 89.7 25 ...........G.GT.............. CAGTGACGTCAAGATCCCGTGCGGC Deletion [18413] 18413 29 89.7 32 G.C.........................G GTCAAGGCCACCGCGCACGACATCGCGAGCGG 18474 29 89.7 32 .....TT.......T.............. TTCGGCCGGCTGCTCCGCAACACGCCACTCCG 18535 29 100.0 32 ............................. AGCGGCTCCTTCAGGTCCGCCCGGCCGCTCTT 18596 29 96.6 79 .................A........... AGGAGCAGTCCTCGCTCAGGGCTGGGGCCCACTGCCCCCATGCAGGTGAGGACGAGCCCGGCGTGGTTGGGTTCGCCGG T [18621] 18705 27 82.8 80 ........-..G..T....T-........ CACGGTTCGGCAGTTCCTGGGCGCTGTTCCGGCGGCCCGCACCAACGCCTCCATCCGGCCACACCGCAGCCACGGCACTC 18812 29 75.9 31 .........A.GTA..TA.......C... GGTCCGTCGCCATCGACACCTGGAAGCGTCG 18872 29 100.0 32 ............................. GAGCACGTGAGACGCCGCTTCACTCTTCTGTC 18933 29 96.6 32 ........T.................... TCCTCGATCTCGGCGGCATTGAGCGGGGCGGG 18994 29 86.2 32 ...........G.GT.....A........ ACCGGGGGTTCGTCGCCGTCCGGGGCCAGGTG 19055 29 86.2 0 ........T..G.GT.............. | ========== ====== ====== ====== ============================= ==================================================================================== ================== 31 29 90.2 37 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GTGTGTCGAAGACTCTGGAAACTTGGATCTCCCGGGGTCGTCCAACTGGTACGTCCCAGACATCGCCGTGGTCCCCGAGGACCTTGCGAGAGGCGGAGGCGCACTGCTCCCGGACCAGACCCTGCTGATCGTAGAGGTGACTTCAGAGTCAAACGCCGAGACCGATCGAGTAGTGAAACGCCGCCGGTACGCCGAGTACGGTGCCCCGCTCTATCTCCTCGTGGATCGGATGGAGGGGAGCCTGACTCTGTTCTCGGAGCCGGGCCGGCTCGGCTACACCCGAGTCGACGGACCACACCCCTTCGGCACCACAGTGCACCTGCCAGCGCCATTCGGCCTTGACCTCGACACGGCCGGCCTCGCGTAGCAGTCAGATCTGGCAGTCGGGGCTCCGCATGTACAGAGGGATGGCCGCCTCCCGGCACAGGGCAGCCGGGCCACCCTGCCTTCGGGTGCGGGGCTACATCCCACTTCCGGATATCCGGAAGTGACTCATCGAT # Right flank : CGAGCTGTTCGGCCGGCCAGTTCCCGAAGAGGCTGCTCCCCGCGTCACCGATTAGATCTCGAACAGGGCGTCCTCTTGTGGCGGGATCGGAGGGTCAAGGACGTCGCGGAGGCGGGTGATGTCCTGGCGCCACTTCGACCAG # Questionable array : NO Score: 4.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.51, 5:0, 6:0.25, 7:-0.34, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [35-42] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //