Array 1 106953-106148 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOCP01000099.1 Salmonella enterica subsp. enterica serovar Typhimurium strain R8_9801_R1 NODE_8_length_169774_cov_1.81605_ID_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 106952 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 106891 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 106830 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106769 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 106708 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106646 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106543 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106482 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106421 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106360 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106299 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106238 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106177 29 96.6 0 A............................ | A [106150] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 124883-123085 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOCP01000099.1 Salmonella enterica subsp. enterica serovar Typhimurium strain R8_9801_R1 NODE_8_length_169774_cov_1.81605_ID_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 124882 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 124821 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 124760 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 124699 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 124638 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 124577 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 124516 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 124455 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 124394 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 124333 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 124272 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 124211 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 124150 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124089 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124028 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 123967 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 123906 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 123845 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 123784 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 123723 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 123662 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 123600 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 123539 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 123478 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 123417 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 123356 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 123295 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 123234 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 123173 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 123112 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 30 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //