Array 1 97889-99930 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVGR01000014.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN033861 CFSAN033861_contig0013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 97889 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 97950 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 98011 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 98072 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 98133 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 98194 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 98255 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 98316 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 98377 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 98438 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 98499 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 98560 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 98621 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 98682 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 98743 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 98804 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 98865 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 98926 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 98987 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 99048 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 99109 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 99170 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 99231 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 99292 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 99353 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 99415 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 99476 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 99537 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 99598 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 99659 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 99720 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 99781 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 99842 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 99903 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 116063-117355 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVGR01000014.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN033861 CFSAN033861_contig0013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 116063 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 116124 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 116185 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 116246 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 116307 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 116368 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 116429 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 116490 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 116551 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 116612 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 116673 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 116734 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 116795 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 116857 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 116960 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 117021 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 117082 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 117143 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 117204 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 117265 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 117326 29 96.6 0 A............................ | A [117352] ========== ====== ====== ====== ============================= ========================================================================== ================== 21 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //