Array 1 217405-217922 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059077.1 Flavobacterium psychrophilum strain F164 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================== ================== 217405 35 100.0 34 ................................... ACTGAAAAAAGCACCATTTTCAATATCAGTCACA 217474 35 97.1 34 .....................A............. AGCTGAAAAAACACCCCTTCTAATAGTAGTTACA 217543 35 94.3 34 ................T....A............. GCCTGCAAAAGACCCTTYTCCGATAGTAGTCACA 217612 35 100.0 34 ................................... CTCTGCAAAAGACCCATCTCCAATAGTAGTCACA 217681 35 100.0 34 ................................... ACTGAAAAAAGCACTATTTTCAATATCAGTCACA 217750 35 100.0 34 ................................... ATCTGCAAAAGCCTCATCTCCAATAGTAGTCACA 217819 35 97.1 34 .....................A............. GCCTACAAAAGCATACCTTCCAATAGAAGTTGCA 217888 35 80.0 0 ...........A.....C.........TT.TTG.. | ========== ====== ====== ====== =================================== ================================== ================== 8 35 96.1 34 GAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : CGTTCGAAGCTAACCTTTTATTGTGTAAAATATTTTTTTTAAATTATTGTATAATGATTGTTTTTGTTGCCTTACCTTTTTTTGTGATTCCTTTTACAAAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCTAATGTGTTGTAAAAATTCACTTTTTGTAATTGTAAGCCCTCTTGCAAGGCTATGTTTAAAATTTCTGAAACAGGGTTTGGGTATATTTTTAAAGCACTTTCTATTGCAAATGAATGATTAGAAAGTAAACCACCAGAAATAGGGCTGAAATTTCTCCAAACCGCGGCTGCCTGATAAGCGACTTGCGTACCAGTAGGAACATTTAAAGCACAGTTTGATTGAGTAATATTGCCGAAGACATTTGCATTAATAACTAAAGGGCTTGTAATATGGCAATTTACTGTCTTTAAACTTCTACAGCCTGCAAAAGCATCCTCTCCAATAGCAGTCACA # Right flank : AATATTCAAAAGCAGATTCTCCAATAGCAGTCACGGCGTAGTTTTCCGAATTATAAGCTACTGTTTCTGGTATTTCTGCTGCTCCAGTAAAATTAGCGTTTCTAGCTACCTTAACAGTAAAAGGAGCTGTTGAAGAAGTAATAGTATAATTTATACGGTTTGCTGTAAAATCTTGTGCTATTCCTAAAAAAGGAATTAAAATAAGAAATAATAATTTTTTCATGTTTTTTGTTTTTAATTAAAAAATTATGTGGTTTACAAAAGTAAGCTAGATTTAGAATAAATACAAATAATACTTTGTTTTTTTGAGATTGGTCTTTAAGTAGGTGTTGTTTCTATATGCCTGCAATTGTCTGATTTTGCTGTTCTTTTTGTTATATTTGGCTTTGCAAACGATTAATTAGGGACTAAAATTCATCAAAATATTGCTTAATGTTCTTTTTTTTATTTAGAAGCTTTTTTTGTATAATGTTATGAATAGAAAAAGGTTAGCCGTTCGA # Questionable array : NO Score: 3.04 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : GAATTAGGAATTGTAACTGATATTAAACCAGAACA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 226015-226259 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059077.1 Flavobacterium psychrophilum strain F164 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =============================== ================== 226015 38 100.0 31 ...................................... GAACAGCCTGCAAAAATACCCCTTCTAATAA 226084 38 92.1 31 ...................G.....C...G........ ATACAGCCAAAAAAAGCAGCATTTTCAATAT 226153 38 100.0 31 ...................................... GAACAGCCTACAAAAGAATCTTTTCCGATAG 226222 38 78.9 0 T...TG.............A.....C...G.....TT. | ========== ====== ====== ====== ====================================== =============================== ================== 4 38 92.8 31 CAGTCACAGAATTAGGAATTGTAACTGATATTAAACCA # Left flank : TTTTGTTGCCTTACCTTGATTTGTCATTACTTCTACAAAGTAATTGCCTTTTGCAAAGCTTGAAACGTTTGTTTCTAAATGATTAGTTGTTTTTATTAACTGCCCTAATGTGTTGTAAAAATTCACTTTTTCTAATTGTAAGCCCTCTTGTAAGGCTATGTTTAAAATTTCTGAAACAGGGTTTGGGTATATTTTTAGATTACTTTCTATTGCAAATGAATGATTAGAAAGTAAACTACCAGAAATAGGGCTAAAATCTTTCCAAACAGCCGCTGCCTGATAAACAGCTTGCGTACCAGTAGGAACATTTAAAGCACAGTTTGATTGAGTAACATTATGGAAGACATTTTTATTAATAACTAAAGGGCTTGTAATATGACAATTTACTGTTCTTAAACTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCACAGAATTAGGAATGGTAACCGATGTTAAACCAAAACAGCCAAAAAAAGCAAAATTTTCAATAG # Right flank : ATTGCAATGTTCAAAAGCAGATTCTCCAATAGCAGTCACGGCGTAGTTTTCCGAATTATAAGCTACTGTTTCTGGTATTTCTGCTGCTCCAGTAAAATTAGCGTTTCTAGCTACCTTAACAGTAAAAGGAGCTGTTGAAGAAGTAATAGTATAATTTATACGGTTTGCTGTAAAATCTTGTGCTATTCCTAAAAAAGGAATTAAAATAAGAAATAATAATTTTTTCATGTTTTTTGTTTTTAATTAAAAAATTATGTGGTTTACAAAAGTAAGCTAGATTTAGAATAAATACAAATAATACTTTGTTTTTTTGAGATTGGTCTTTAAGTAGGTGTTGTTTCTATATGCCTGCAATTGTCTGATTTTGCTGTTCTTTTTGTTATATTTGGCTTTGCAAACGATTAATTAGGGACTAAAATTCATCAAAATATTGCTTAATGTTCTTTTTTTTATTTAGAAGCTTTTTTTGTATAATGTTATGAATAGAAAAAGGTTAGCCG # Questionable array : NO Score: 2.50 # Score Detail : 1:0, 2:0, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGTCACAGAATTAGGAATTGTAACTGATATTAAACCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 1327114-1325552 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059077.1 Flavobacterium psychrophilum strain F164 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 1327113 46 71.7 29 A.AA.T....A.ACC...CGGGT....................... TTTTGTTTTCGTCAAATTCCCCATTTGTG T [1327109] 1327037 46 100.0 30 .............................................. ATTAATGCGCTAATTATCGAAGGTAGCACT 1326961 46 100.0 30 .............................................. AGGACGATTATAAATTTATGCTAAATATTA 1326885 46 100.0 30 .............................................. AGATATATCTAATACTAGAGCGTACGACAG 1326809 46 100.0 30 .............................................. AAAAACAATATCGAAAAACTGAAAGAGAAT 1326733 46 100.0 30 .............................................. ATTTAATGTAATTGTACCCGAACCAGCTCC 1326657 46 100.0 30 .............................................. TATATCCGTGTTTGAATACACATTGCCACC 1326581 46 100.0 29 .............................................. CGTTTTCGCACGTGAAATCAAAGTACTAT 1326506 46 100.0 30 .............................................. TTTTAAAAAATGGTTAAGTAGGAAAACTTA 1326430 46 100.0 30 .............................................. TCCAGTAAGCGAGATGTCGTATATCAAAGT 1326354 46 100.0 30 .............................................. AGCCAATGCCTTGTGTCCTGTTATGTGTTC 1326278 46 100.0 30 .............................................. AAAAGATTTAGCAACATAGATGATTGTTTT 1326202 46 100.0 29 .............................................. TTTTACTTTTTATTTAAAGCAACTGTAAT 1326127 46 100.0 30 .............................................. TAATAAGTTGCTCGTTTCCGTTTATTCCGT 1326051 46 100.0 30 .............................................. AGTAGGTAATGTATTCACAATAGACACATT 1325975 46 100.0 29 .............................................. AAAACGAAATACATACAGCGCACGCATTC 1325900 46 97.8 30 ............................C................. AGGCACTTCTTTAGACTTAAATAAGTCTTT 1325824 46 100.0 29 .............................................. AGTAATAGATGGGGGGTTTGAATGCCGTA 1325749 46 100.0 30 .............................................. TCATCATCTGATGAAAATTGCTGTTCAATA 1325673 46 100.0 30 .............................................. AAGCAAAATAAAATAAAAGAAATATTTAGC 1325597 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 21 46 98.5 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : TTTGCGTGGTACATCAAATTAGAAACGCTTGTAGATATGTGGTATGGAAAGACAAAAAACAATTTACAACCGATATGAAACTTGTTTATACAGCACCAACAAAACAAGCTGCCGCATTAGCTTTGGAAGATTTTGCTCAAAAATGGGAATCCAAATATGGTTATGCCATCAAATCCTGGAGAGAAAACTGGGACGAATTAACCGTGTTTTTCGACTTCCCGCTAGAAATTCGAAAAATAATCTATACTACAAATTTAATAGAAAATTTAAATGGAAAAATTAGAAAATACACTAAAAATAAAATGTCATTCCCTACTGATGATGCGGTTCTAAAATCAGTTTATTTAGCTTTAAAAGAAGCAACAAAAAAATGGTCAATGCCAATACAAAATTGGGGTATTGTTTTAAATCAATTTAATCTTATATTTGACAAAAGGCTCAGATTATAAAATCCAAGCCTAACTTTTTAACTTACACACTTTGCGGGATAGTGTCATCAA # Right flank : ATACCGCGAGTTAATCGTTTGATATGTTGGTGGTTATATGCTTATTTTGAAATTAAAAAACAGTTCTGTTTGTGTGTTGATATTCTGGTAGGTCTAATATTTCTAAATCCTATTTTTCAAAAAAGTTCTAATTGTTGCGAAGGTTTGTCTGTTTCTACAGGTTTTTTTCCATAAAAAAGCTCCATCATACCAAATTGTTTATCGGTTATTTGCATTACTCCAATTTTGCCGTGTTCGGGCAAACTATTTCTTATTCTTTTGGTATGTACTTCGGCATTTTCTCTGCTGGCACAAAATCGTATATAGATCGAAAACTGAAACATAGAAAAACCATCGTCCAATAATTTCTTGCGAAATTCACTGGCAATTTTACGCTCTTTCCGCGTTTCGGTAGGTAAGTCAAAAAAAACTAATATCCACAAACTTCTATACTGGTTTAAACGGGTGTAATGTTCGTCATACATAAATAGGGTATAAAATTTTTCTTGCGGCTCCCGCAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //