Array 1 194961-199691 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPVS01000004.1 Rothia aeria strain C6D contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 194961 29 100.0 32 ............................. GGGCTACGAAGAAGAGCCAAACCTCAAGGTTG 195022 29 100.0 32 ............................. GGAGCAGGAGGGGAACAGCAGAGTATGAGCAA 195083 29 100.0 32 ............................. CGCCCATGCGAGCAAATCGCGGGCGACGGCCT 195144 29 100.0 32 ............................. AAACCCCCACAATTCAGGTGGGAAACTAGAAA 195205 29 100.0 32 ............................. TCCTGACAAACCACCAGCAGGTTCTTCAACCG 195266 29 100.0 32 ............................. GCACCCCGTGAAAATGCACTTAGTGCCCTTAA 195327 29 100.0 32 ............................. GGAAAGTCGCCGTACTCGCATTGGGGTACGGC 195388 29 100.0 32 ............................. GTGTCTAGCTCTTCCAGTGCGCCGGTATGCAA 195449 29 96.6 32 ............................T AGAGGGCGAAAATATTATGCTTGCACTAGAAA 195510 29 100.0 32 ............................. TTCGGACTGTGGGAGGATGGTACCACCTTCAT 195571 29 100.0 32 ............................. GAAAGCGCGACCCACAGCCCAGTCCCAGACGG 195632 29 100.0 32 ............................. GACAGAGCAAATGAATCTTGCTGAAACATTAG 195693 29 96.6 32 ............................T ACGTGGGCGTGCGCGTGGTATGTGTGACGTGG 195754 29 100.0 32 ............................. ACGCCCGCTACACCAAATACCCCGCGACATGG 195815 29 100.0 32 ............................. GTCTGCTTCTCTCATGCCCCTCAGTGTACCGC 195876 29 100.0 32 ............................. CGGTTAGCCGAAACTTGCGTGTACGGTAGCTC 195937 29 100.0 32 ............................. GTCTGCTTCTCTCATGCCCCTCAGTGTACCGC 195998 29 96.6 32 ............................T TTACCGTGACTGACGGTATGCGAATTGCTCAG 196059 29 100.0 32 ............................. GTGTACCCCTTTCGTCATAGCAAGGTTTCGGT 196120 29 96.6 32 ............................T GGGAACAGGCCAACAAACGCCTATCAAGGCAG 196181 29 96.6 32 ............................T GCGATAGTCCCCACATTTGTAGGAAGTCCATT 196242 29 100.0 32 ............................. TTCAACGTAGGGATGAACAGGCGGCCCGAACC 196303 29 100.0 32 ............................. AATTCATAGCGGCCCTGCGGCTGGCAAACGAA 196364 29 96.6 32 ............................T ACCACATCGTGAAACAGCTCGACAAAGAAGAC 196425 29 100.0 32 ............................. GAACAGGGGTGTGAGCATCACTCACACCCCAT 196486 29 96.6 32 ............................T ATGCACCCACTAGACCCATTCGTAACCAAAAC 196547 29 100.0 32 ............................. AGCCGCCACCCGCTTCACAAGGCTCTCTAGTG 196608 29 100.0 32 ............................. AAAGCAATGCCCCTCAAGCACACATGGCCCGC 196669 29 100.0 32 ............................. TAGGTGATGGAATTACCGGAAATCGTGCCGCC 196730 29 96.6 32 ............................T ACGGCCTCAATATTCTGCGGCGTCACTCCGTG 196791 29 100.0 32 ............................. ACCTGAACGATTCAAACGCCTTTATCGACGAA 196852 29 100.0 32 ............................. AGACCGCGCCGGGGGCAACGCCGTCTCAAGCA 196913 29 100.0 32 ............................. AACCCGGTGCCCCACGTGGTGCCCGGGTTGTT 196974 29 96.6 32 .................A........... AACACGTCAGCAAGAACCCTATCCACCGGGCC 197035 29 100.0 32 ............................. CCTCTAAATCAGTAGACTTAAACGGGCCTTCT 197096 29 100.0 32 ............................. TTTAGCTACATGGAGGCCGCCTCCGCTACCAC 197157 29 96.6 32 ............................T AACTAGGCTCAAACGTCGCCGCCCGGCTTTCC 197218 29 100.0 32 ............................. ACTCACAAGTTTTTCCCAGTTATTCTGGATGC 197279 29 100.0 32 ............................. GCGGGCGGCTCCTAGCCGAAATCGTAGATGCG 197340 29 100.0 32 ............................. ACAGCTGACCCGTGGGCTGCGAATGGTGAAAT 197401 29 100.0 32 ............................. GCGCAGCTGGAAGAGATGAGCACCACCCTAGC 197462 29 100.0 32 ............................. ACCGGTCAATGACCTATATAGCGGTCGCCGGG 197523 29 100.0 32 ............................. CCATAGGCAACCAGCAGCGGCATGACAACCAG 197584 29 100.0 33 ............................. CATATTCTTTGCGGCGACATCAGCCGGGGTAAG AT [197607] 197648 29 100.0 32 ............................. GGCTGATCGCCGCGCATGCGCCGGTATAGGGA 197709 29 100.0 32 ............................. GGAAATTCGCGGGCTACCGCACAATGGTGTAC 197770 29 100.0 32 ............................. GCTTGATTGAGCTGATTTACCGTGCGGGCCGC 197831 29 100.0 32 ............................. TGCAGTTTCAGCTGACATGCACGGGCGTGCAA 197892 29 100.0 32 ............................. CAATGGCGCAAAAACCCGGGATAGTATTCACA 197953 29 96.6 32 ............................T AGCGTCAGCCATGCTTTCATCGTCCTTTCCCT 198014 29 100.0 32 ............................. CGCGTGTCACGCACCGCAAATGCGGCGGACAC 198075 29 100.0 32 ............................. TGGGAGAGCTTGGCGCGCTCTTTGCTTCGTCT 198136 29 96.6 32 ............................T ACACCGGTTTTTTCGGGCACGGGGGTGCTGTT 198197 29 100.0 32 ............................. AACGCGCTAAGCCACCTAATGGCAACGTCCCA 198258 29 100.0 32 ............................. GATCATCGACACGGCCCAATATTTATAGGCTC 198319 29 100.0 32 ............................. CACCCCGAGGCTATGTGGCGCAAAACGGCGCT 198380 29 100.0 32 ............................. ACCAAACCGAACGCATGCTAGCACTACCCGAG 198441 29 100.0 32 ............................. AGCTGCGTGAGCACGCCGCATACATAGAGGGA 198502 29 100.0 32 ............................. AAATGTCACCTGACCGTTTCGGGCGCCGCGTT 198563 29 100.0 32 ............................. ACCACCAATGACGGTAATCTGCTGCTAGCGAC 198624 29 100.0 32 ............................. GTGGATATGAATTCCCCATTTACTTCTAAGCG 198685 29 100.0 32 ............................. ATAACGGAAGAATTTACCGAGCGTGTCAATCG 198746 29 100.0 32 ............................. GTGTTTCCTACTTGTTTTAGGAGTTGCCGCGC 198807 29 100.0 32 ............................. TAGGCGACCCCCAGGTCATCATCGCCGCCGCC 198868 29 100.0 32 ............................. CTCAGCAGAGGCGAACGCATCACCCTCCAACT 198929 29 100.0 32 ............................. CGCTCGCTGGGGCTATCCCGTCGGTGGCTCCT 198990 29 100.0 32 ............................. GATGGGCTGCCTACTATTTGGGTGCAGGGGAA 199051 29 100.0 32 ............................. GATGACTTACGATCCTGGGACGGGAGAAGCCA 199112 29 100.0 32 ............................. GCCAGCTTGGGCATTGAGTTCCACTGCTACGC 199173 29 100.0 32 ............................. ATTACTTTTGAGGGCATGATGGAGGCCGCTGC 199234 29 96.6 32 ............................T GTTCAGGTTGTTGGTGATGGGCGTGCCACACA 199295 29 100.0 32 ............................. AATTGGACGAAGCCCGGCCCGTGTTCTTTCAG 199356 29 100.0 32 ............................. CCTCTAACACCCATTCCTCACCTGCCAGCCAC 199417 29 100.0 32 ............................. TACGGTAAAAATTGGGACGCTGTTATTATCTG 199478 29 96.6 33 ............................A GAGTGCTCAAGCCCGGCGGTGATGCAAAAAGTC 199540 29 100.0 32 ............................. ATGCTCTGCGAGCTCCCGCTGGGTTTTCCCCT 199601 29 93.1 30 ......G.................G.... CAGAACAGTCGCAACCGCACGGAAATAATC GT [199627] 199662 29 75.9 0 ..TT.T........T....A...A.A... | A [199673] ========== ====== ====== ====== ============================= ================================= ================== 78 29 99.0 32 GTGCTCCCCACACACGTGGGGATGAGCCG # Left flank : TTTGGGATGAGAAAACTGGGGGTGCAATTGCCCGATATAATTTTGAGACTGGTGGAGAAACATGATCGTGGTGGTTTTATCAGCTTGCCCTGTTGGTTTACGTGGGGATTTAACGCGCTGGCTTCTTGAAATTAGTGCTGGGGTATTCGTAGGAAAGGTAAGCGCCCGCGTGCGCGAGCACCTGTGGAACCGTATTACTACAACGTGTAGTGATGGTAGTGCGCTTATGGTGTATTCGGCGGATAATGAGCAGCGTCTTGAGTTTAAAGTGCATCGTCACCCGTGGGAGCCTGTCGACTTTGAAGGGGTAAAACTTATGATGCGCCCGTCTGCCCCGAAAGAGGATCTAGGGCCACGAAAAGGGTGGAGCAAAGCTAGCAGGTATAGGCGCGCTTCCCGACGGCGATAAGCCCAAAAATCGTGTAGGGTTAATACTGGCTTTGGGCTCCAAACTAATTCTAAAACTTGGTGTGTGGGGATAAAATCCCATGTCAGCAAGT # Right flank : GACGTTTACTAGGGTATGTACCCTGCGGTTTTTGCGTTCCCCACATATAGACAGTCCGAGCGACTGCTGGCTGGGTATGATGTAGCTCCTCGTATTTTTCTATTCCTTACCTCACTGGTTTTAATAAAATATTTTGCAGATTCCGCCCTCAGCATGTGCTGTGCACCTGCGGGGAGGGGGGTCTATACTCTACAGTTAATAGAGAAGGCTCCTGATCGTTCCCTGCACCCGTAGGGTCTGCTAGAAAACGGCTTGCCTGCCCGAAATTTTTTTGGGTGGGTTGGCCGCTTTCTTTTATTTAATTTTCTTTTGCTATGTTTTCTAACCGTCAGCTTCGCGTCTACTGTTTTTTCATGGGCTGCGGTGATAAAAGTAATTTTTTGTGTATTTTCGGTATTCGGTTTGTAAAACCCTGGGAGTTCGCTAAAAATTATGGGTAGAGCATTATTGAGGATGCTTTTGGATGCGCGCCCTGTTTCTTCCGGTTAAGAGTGGTCTTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACACACGTGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //