Array 1 1842018-1839143 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011546.1 Corynebacterium uterequi strain DSM 45634 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1842017 29 100.0 32 ............................. GCAACCGCATCGACGTCGACCTCACCGATGTG 1841956 29 96.6 32 ............................G AGATCATCGACTGGGGAACCATCCTCGAGGAC 1841895 29 96.6 32 ............................T GCCCCAAATGGTGCATGTTTTAGACAGATCGA 1841834 29 100.0 32 ............................. CATGTCATCACCCACCCCCTGCCCGCGCCGTG 1841773 29 100.0 32 ............................. ACCATGAGGTTGACCAGCAGCATCCCGCCGAT 1841712 29 96.6 32 ............................G GACGCGGAGGTCGATGAGCGGCCATCGGTGCA 1841651 29 100.0 32 ............................. CTCACCTGCGCATGGTGCGGCCTCCCCATCGA 1841590 29 96.6 32 ............................T AACCGTTCGTGCCGGTCGCTACTCAGTAGCGC 1841529 29 100.0 31 ............................. GGGTCTGAGGCGCTGCTCATTCCGTCCCAAC 1841469 29 89.7 32 .G...T......................T CCCCACCCGCGCGGGCGGACCTCTCGCACTCA 1841408 29 100.0 31 ............................. GGGTCTGAGGCGCTGCTCATTCCGTCCCAAC 1841348 29 89.7 32 .G...T......................T CCCCACCCGCGCGGGCGGACCTCTCGCACTCA 1841287 29 100.0 32 ............................. CCGAAGTATCTGATTCGGTTAGATTAACCTTG 1841226 29 93.1 32 ......................G.....T CCGTCGGGAGATTGAGCGTATCGGTAGTGAGC 1841165 29 100.0 32 ............................. CACCATGCACTTGCACACCATCGCCGACGCCA 1841104 29 96.6 30 ............................G CTGTAGTCTGCCTCGGCGGTATGTCTCTCG 1841045 29 93.1 32 .....T......................G AGATCATCGACTGGGGAACCATCCTCGAGGAC G [1841043] 1840983 29 96.6 32 ............................T GCCCCAAATGGTGCATGTTTTAGACAGATCGA 1840922 29 100.0 32 ............................. CGCGTCAAAGCGGCGCGTCTAGCGTTTCTCAA 1840861 29 100.0 32 ............................. CGCGTCAAAGCGGCGCGTCTAGCGTTTCTCAA 1840800 29 96.6 32 ............................G TTCCCTATCGTCACCCTCACCAACCAGCTCGC 1840739 29 96.6 32 ............................G TTCCCTATCGTCACCCTCACCAACCAGCTCGC 1840678 29 100.0 32 ............................. CCCACCCCGCTAGAATAGGGGCCAGCACCGAA 1840617 29 100.0 31 ............................. TATTTGGCCGCCAAAATAAACCCCCAAATAG 1840557 29 89.7 32 AG...T....................... AAGCAGCCCCAACGGTGCGTGAGTGGCTGGTG 1840496 29 96.6 32 ............................T CCACGGCCACTAATGTTTCGCCCCGGCTAGAC 1840435 29 100.0 31 ............................. CAGGTAGAGGTAAAGCTGGCTTAGGTGGTGT 1840375 29 93.1 32 .G...T....................... CACCCCGGTGACCACGTCGGCGAGATGCTGGC 1840314 29 96.6 32 ............................T TTTGCTGGGGACATCTGCCGCCGTAGTCGTGG 1840253 29 100.0 32 ............................. GATGACGAACTATCTTCTGCGCCACCGCCGAG 1840192 29 100.0 32 ............................. TAAAACAATAAACCCCCTTACCTAGCGCAAAA 1840131 29 100.0 32 ............................. GCCATCGCCCGTGAGTCGAACCGCATCGCCAT 1840070 29 100.0 32 ............................. TCCTCGCCCTCGCCGAAGCAGTCGGCGTCTAC 1840009 29 96.6 32 ............................G ACCTCCCCGCCGACGCGCACGCCGTGCTAGGC 1839948 29 96.6 31 ............................G GCCGTCGCCTGAACCCGGAGATTCCGATGGG 1839888 29 89.7 32 CG...T....................... ATTCGCTAACCCGTTCGGACTCAAGGAGCGCC 1839827 29 96.6 31 ..................A.......... ACGGGGTTGATCCCGTCGGTGAACGCGTCCC 1839767 29 89.7 32 .G...T......................G GTGGGGGGAGCGGCGTATGGTGATCGTGGGTG 1839706 29 96.6 32 ..............C.............. CGACCAAGCAGCCCCACCCCCACCCCCACCAA 1839645 29 100.0 32 ............................. CTCCTCGCCGTCGGTGAAGGTGCCGAGCCACG 1839584 29 96.6 32 ............................T GCGCCGGGCAGGTCAAGAAATATGCGGGGTGT 1839523 29 96.6 32 ............................G AACTCCGAAGAATCATCACCGCGACCCAACGT 1839462 29 100.0 31 ............................. GCAAACCGGTTAGCACTAAATGTGAGCAAGA 1839402 29 89.7 32 TG...T....................... CATCCGGCTACGGCGAATACGGGGTGATGACC 1839341 29 93.1 32 ......T.....................T CATGACTGACCGCCCCACCCCTCAGCAGCCTC 1839280 29 96.6 20 ............................G AGACGATAAGGCCCCACCAT Deletion [1839232] 1839231 29 93.1 32 .G...T....................... CTCACGCGCTGGAAAGACGGGGCCCGGGCGGC 1839170 28 89.7 0 ........-.............A.G.... | ========== ====== ====== ====== ============================= ================================ ================== 48 29 96.6 32 GTTTTCCCCGCGTAAGCGGGGATGAGCCC # Left flank : CGACCACGCGCACCGTTATGCGCTGGCGTGGCAGCGCAACCGTGGGATTGTGCTCGACGAAGGTCGTGCGTGCACAGCCGGGTGCGGGGCAGGTATACCGGCGCTTGAGCCAGCAGATCCTCACCGGCCTACCGAAAGAGGGAATGTCTACCAGCGTTACGGGTACCCGCCCATGGGCGGCGCCTGGGCCGTGACAGTCGGGGCACGCCCGTGGTGTGGGATCGGATTCGACCGTGATTTCCCGGTACTCGTCGCGGTCGTGGACGCTAAGGACGTGCACCCCGTCTAGTCCGACGAGGTCGTCGCATCGCTTACAGTAACCGGCGGGGTCGAGGTTGATGGCCTGCTGGGGGTTGGTTGTAGGATCGGACATGGGTCGAGGCCTTCGTTTCAGGATTGGTGAGTGGTATCCCCTATCCTGCTAGGGCCTCGGCCCTTATTGTGTGCACGACACCCACCCCGGGATGAGACACTCACCCACACTCAAACGCGAAGAGCCA # Right flank : AGATAGCTGAGGCATCGTTCTGCTATCCTAAGCGTCTCCACAGCAACAGCCCGTCGGCGTGCTTACGCGCCAGGTCCTCAGGTTTAATCAGCCCGGATTACAGGAGCGGGACGCTAAACGTGGAGGTACCAGCGAACGGGTCGAGGATGCACACGCCTTCATCCGTAAGCCCCTTGCCGAAGTGAATACGCGACGCTTCATCCGCGGCACGCAGGATGAAGTCCACGATCTCCACCGGGGTGTAGACAATGCCCAGGGCTTCGGCCTGCTTCTTGAAGCCTTGCGGAAGAAGCGTTCATAGAGCTCTTTAATGACGTGCAGCTTACCCGAGGCGGATGTGACTTCGCTAGCGCGCACGCGCACGGACTCGTAGAACTTCTCCAGCTGGTCGGTCTCAGAGTCAATGTGGGTGCGGTGTAGGGCCGTTACCATCGTGTCCATGACTTGGGCTACGGGGTTGTGGGCGATGAAGTCGTAGTTGTCGAATAGGGCGTTAAACA # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCGTAAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1844725-1843536 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011546.1 Corynebacterium uterequi strain DSM 45634 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1844724 29 96.6 32 ............................G ACCACAAGCAAGCAGACCCGTGGCGTGGCGAT 1844663 29 96.6 33 ............................G GATCCCCCTCATGTTTCTCAAGCAGTTTACAGA 1844601 29 96.6 32 ............................A TTCCTGCGGCGTGTGGTGGGCGGCGGTCCAGC 1844540 29 100.0 32 ............................. TTAGGGCCATCGCCAAGAGAGCGAGGGAAACT 1844479 29 100.0 32 ............................. TCGGCCCCGCCGGGTTCGCGCGCGGCTATGGC 1844418 29 96.6 32 ............................T CTCTAGCCATTGCCTTCCTCGATGAGTCGTCT 1844357 29 100.0 32 ............................. CCCAACGTCCTGGAGATGATTTTCACCGCCGA 1844296 29 100.0 32 ............................. CATGTCATCACCCACCCCCTGCCCGCGCCGTG 1844235 29 96.6 32 ............................G GAATGGCCCCCAGGTGCGCACCCGGGGGCCGA 1844174 29 100.0 32 ............................. CAGGTGCGGACCTGGAGCTTGCCACTGCTGGT 1844113 29 100.0 32 ............................. GTGGGAAACCACCCCCCTACAGCCCGGCGCGC 1844052 29 100.0 32 ............................. TGATCGATGAAACCATCGACGGGCGCGAGATC 1843991 29 100.0 32 ............................. GACGAACTGGGAGCGTTTCGACCCGTCCTTGT 1843930 29 100.0 32 ............................. CCAGCCGACGAGCTCCCCGAACAGGCTCAGCA 1843869 29 100.0 32 ............................. TCCGGCGTTAGCTATTCTTCGCCGGGCGTCGA 1843808 29 100.0 32 ............................. ACATCCAACGACGCACCATTATCCATGCTCAT 1843747 29 100.0 32 ............................. CGAATTTTCGACGGCATCCCGGGCAGCGACTC 1843686 29 100.0 32 ............................. TTTCTTGGCCGCTGGTTTGTCGATACTGATGA 1843625 29 100.0 32 ............................. AACGCCCGATCGTGGTGCGTTGCGACCACGCC 1843564 29 93.1 0 .....................T......G | ========== ====== ====== ====== ============================= ================================= ================== 20 29 98.8 32 GTTTTCCCCGCGTAAGCGGGGATGAGCCC # Left flank : ATGAGCTTGAGCTGGTGGCTGCCGGTACGAACTGGAGCGGAGAAGCCGGTGATTGGAGGTGATTGTGTTGGTAGTTACCGCTGTACCGGCGGGTCTTCGCGGGGACCTGACGAAGTGGCTGATGGAACTAAGCCCGGGAGTCTTTGTGGGTAACCCTTCTGCCCGTGTACGAGATCTGTTGTGGGAACGCACGGTGAGTCTCTGCAAGGATGGTCGAGCGTTATTAGTGAAGTCGTCTAACAATGAGCAAGGGTTGGAATTCCAGACTCATCGGCACAGCTGGAAGCCTACCGATTTTGATGGCATCAAGCTGATGGTGCGTCCCGCTTCGTCGGAGCCGGCTGAACAGGATAGGAGAACTGGATGGTCGGCTGCGCGACGTCTACGTCGAGGCCGATAAGGGGAGGATCCTAGTATCCCGGCGCCGTGCCGGCGTCTGGGTGGCTACCAAGTTGTAGTAGAAGTGGGTCCACTGCTAGTATATTCGCAGGTTGGGCAGG # Right flank : AACGCCGCCACCACCGTCTGGGGCTGGATCCAGTTTTCCGGCTCTTCGTGTTTGAGTGTGGGTCACAGGCGTAGCCCCCCGGCGATCAACAGCATCCGTAGACGGTAGTTGTCACGGTTGCGAAACCCTCTTGCCAGGCGGCGATGAAGCTCGATCAGCCCATTGATCGCTTCCGTGCCACCATTGTTACTGCGCGCGGTGTCCCAGTACGCCAAAAAGGCATCCTTCCACCTACGCAACGTTCTGCCTAACCGGGCCATCTCCGGTATCGGACATGACGGCAGACTCCGCAACGCTTCACACGCCGCCCGCCGGCCTGCAGCCATATCCGGTTCGTGATACGCCGCCCGCAGGGCATGCGCCGCCTGCCAGGCAATAAACAACTCCTCGTGACGCGGATCGGCGGCGATAGCCGCATCAAAGCGTTGCCACTGACGCTCAGTGAGCCGACGAGGATCACAACGCACAATGGTACGAATGCCGTACAACGGATCTCCGCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCGTAAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2380318-2380646 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011546.1 Corynebacterium uterequi strain DSM 45634 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2380318 37 100.0 35 ..................................... GAGGCCACCTGGAGGCGAACTATCGAGGTGCAAGC 2380390 37 100.0 36 ..................................... GAGCACAAGGTAGCCACCAACCCGGCGACGGGGGAA 2380463 37 100.0 36 ..................................... GCCCCGGTCCCGGTGTTTTGCCACATGGCGGCCTGG 2380536 37 100.0 37 ..................................... CCCGCTACGGCGGGTCAAAAAACACACCATGACCAGG 2380610 37 94.6 0 ....T...............................C | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 98.9 36 GTTGCCGTCGCTTCTGGCGACGGCCTTTCATTGAGGG # Left flank : CCCGGCGCGAGGTCACCCACCGGGTTCGGGGCGTGGAAGGTGCCATTGTCCAACCAGTAACGCTGCCACTTCGTCTCGATCTCGTTCGCGAGAGCGTTGGTGTAGCGGTGCTGCGGGGTCGCCGATGCCGGCGCGGTGTTCGTCATGCTTAGTCAGTGTAATCAGTAGGGGCGACGACGCTGGCTAGGCCCGGGGTTCGGCCTTTCGGCGCCGACGCGGCGCTGCAGTGACCTCACTCCTGTTCTGTCTGGCACCCTTATGTTTCATCATGTTTAAACTTTGGCGGAAAATCTGGCGTCATTGTTAAAGTTTTGGACGGAACCACCCGACACCCCTAGGGCGTCCTGGGGAGCCCTCGGAAGTCGATCCGGTGGACCGTCTCGTCCGGCAACCTGGGGGAGAGGGCGTGCGCGGGGACGCGGGCTAAGCTGGTCGGTGTCCTCGCGGCCTTTCATTGAGGGACGGGGTTCTACGCCCCGCTACGAATGGCGTCCGAGGGG # Right flank : CTGCTCTCAGCCCCACAAGGCGCGAAGGAGGGTGTGTTGCCGTCGCCTTGAGCAACAGCCTCTACTGCAAGCCGAGCCCCTTCCCGCCGGCCCAGTCAGCCCCCTCAACCCCCAACCGACTAACCCAACCACCCAACCAACCACCCCGAATGTTTCACGTGAAACAAAAACGGCCGGCTCCCATCGGGAACCAGCCGCCTAACCGAGGAGCGCTACACGCACCCGCTCTAACGATTTAGTGAACGTCGATGAACTTCTTGAGCACCCAGCCCTTGAGCGCGATCATGATGAGGCCGATAACGATGGAGCCGATGCCCACCCAGAGGAAGAAGTTGAACTCGGCCGACGGGTCGTTCGGGTTGTACAGCCCGCCGAGGGTGCCGGACAGGGAGGTGCCCATCGACACGGCGAGCAGCCACACCGCCATCGTCTGCGATTGGAACTTCTCCGGGGCCACCTTGGTGGCCAGGGAGTTGCCCACGGGGGAGAGCATGAGCTCA # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCCGTCGCTTCTGGCGACGGCCTTTCATTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //