Array 1 2262090-2262296 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN150741.1 Yersinia pseudotuberculosis strain ATCC 4284 scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2262090 28 100.0 32 ............................ ATGTTTGCTGACGTGCCGATTGAATAGTCACC 2262150 28 100.0 32 ............................ AACTTGAAACCTTCCCAGCAGTGACACTGGAT 2262210 28 96.4 32 A........................... TTACACGCTGGACGGCCAGGGAGACGAGAGCT 2262270 27 85.7 0 .....................CC.-.T. | ========== ====== ====== ====== ============================ ================================ ================== 4 28 95.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GTTATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGCCAGAGCGTATTGTCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAAACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATGGGCCACGCCACCCCCCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCCGATTCTTGTGACCCTCTTTTTTTCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAGGGTTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACT # Right flank : AATCTCAGCTCTCTGGCGGCGTTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTTATTCAAGGTATTTGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAACAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCA # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3288553-3285759 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN150741.1 Yersinia pseudotuberculosis strain ATCC 4284 scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 3288552 28 100.0 32 ............................ AAGGATTGATGCAAGCACAAAGTTATAATGAT 3288492 28 100.0 32 ............................ TAACAATTTATAATCTTCAGATTTAGTTAAAT 3288432 28 100.0 34 ............................ GAACAGCAATGGGATGAAATTAATAATATTAAAA 3288370 28 100.0 32 ............................ GTGCTAGCTAATCACGCTAGTAGTGTGCAAGG 3288310 28 100.0 32 ............................ AGACACAGGCGAAACTATATTCTATATGAACC 3288250 28 100.0 32 ............................ TATATGAATCAGCTTATAAATATGGGTAACAG 3288190 28 100.0 32 ............................ TTGCACCGTGTCAGCTTTTAACGCATATAATG 3288130 28 100.0 33 ............................ AAAAATGCCTGTGAGTCTAAATTAATGCGTTTA 3288069 28 100.0 32 ............................ AAATGGCCTGGCGGCTTTGGGGTCGTGGTCTT 3288009 28 100.0 32 ............................ ATATTCATGACAAAACCGGCGTCATTAACTAA 3287949 28 100.0 32 ............................ TTGCTAACATTCGCACCATTAGAACTTTTGTT 3287889 28 100.0 32 ............................ TCCGGTCAACGCCACGGGTTGCTACATAATTA 3287829 28 100.0 33 ............................ TTATTTAATTGGAATGGGTGGGGCTTCATGGGC 3287768 28 100.0 32 ............................ TATGTCGGATAGTAACGTCGAGGGGTTCCGAT 3287708 28 100.0 32 ............................ TTGCACCGTTTCTAGATTTAATGCTTTTAATG 3287648 28 100.0 32 ............................ ACGCTAATCTCTTGCATAGTATCACCGAAGGG 3287588 28 100.0 32 ............................ AGCTTCTTCGTGACTCATCCCGCCGCCGACAT 3287528 28 100.0 32 ............................ AATAAGTATGCATAGCCTCAACCGCCAGTTCC 3287468 28 100.0 32 ............................ AGCCCGGACGCGATAGCGATCAATTCCAGCTC 3287408 28 100.0 32 ............................ TCCTCGCGACAGCGAGGAGGAGGAGGGAGAGC 3287348 28 100.0 32 ............................ TTTGGTGTCTCAGAGATGACAATTAACAACTG 3287288 28 100.0 32 ............................ TGAAATATGGCGTGATAAGCCGGAAGCGCAGG 3287228 28 100.0 32 ............................ TCGAAGAGTGCATACAACGCGGTGATGATATG 3287168 28 100.0 32 ............................ TAAATTTGAACAGGTAAATGGCCGGAGTTATG 3287108 28 100.0 32 ............................ TGACTGCATGAAATCATCAAGTATTCCATCTA 3287048 28 100.0 32 ............................ AACGATCACCAACTTTAAACATGTGAAATTTT 3286988 28 100.0 32 ............................ AGAATTACAAACGGCTTATAACACAGCCATAG 3286928 28 100.0 32 ............................ TGCAACTAAACAAGTTATTGAGGGATATATGG 3286868 28 100.0 33 ............................ TGAGAACCAGATAAATCCTCACCTAAATTTGTT 3286807 28 100.0 32 ............................ TATTCCCGCTAAGTTAGTCCCTGTATTTGCAA 3286747 28 100.0 32 ............................ CTAGTGTAATAGCTAATAACACGTCTGGTATT 3286687 28 100.0 32 ............................ AAGAACCCGTCAGGGATTGACAAGAAAGCAGC 3286627 28 100.0 32 ............................ GAGATTAATTGTATCGTAATAACTAGCCACGT 3286567 28 100.0 32 ............................ ATGAAGCGCCAGCGCCACCCATTAATAACGGT 3286507 28 96.4 32 A........................... GCCTCGCTGATGGAGGAAAAGGTCGAAAAAAC 3286447 28 100.0 32 ............................ GGATGCCATCGACTGCGAGTGAGCGTAAGCGC 3286387 28 100.0 33 ............................ AATTAGTTCGCGAACATCACTCTCAGATAAAAT 3286326 28 100.0 32 ............................ TTACAAAAGGTTGTCACTGATGACCGTCGAAT 3286266 28 100.0 32 ............................ TGCTTGCAGACCCTTGAGTAACAGCGCCCCCT 3286206 28 100.0 32 ............................ ATATAGAGAGTTTAAAAACAGTTTACCTAACG 3286146 28 100.0 32 ............................ CAGGCGGGGCGGCCCGATACTGACCCGAGAAT 3286086 28 100.0 32 ............................ ACCCCCCCATTTCTTGAAGTGCTGATAGTGGC 3286026 28 100.0 32 ............................ TTCCATTCAACCGTAACGCCCTTTATATTAAC 3285966 28 100.0 32 ............................ AGACACGCTAATGACTTCTATTACTTTATTTT 3285906 28 100.0 32 ............................ CAGCAAGGAACATCGTCAGAAAAAACACTCTA 3285846 28 100.0 32 ............................ GTTACGTGGCAAGTATCCGACCCGACGCTGGG 3285786 27 85.7 0 ...................A-.A.T... | C [3285762] ========== ====== ====== ====== ============================ ================================== ================== 47 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATTGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGTGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGATTGTTGCCCCGCGAGGGGGGAGACATCTTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : TTCTGGACCATGCGTTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGCATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //