Array 1 92531-91364 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPVO01000004.1 Pasteurella multocida strain HNA09 Contig004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 92530 28 100.0 32 ............................ TTATCGCGGAAGTCAGTCGCCATAATGGCGTA 92470 28 100.0 32 ............................ ATTTCAGGTGAGCAGTGGATGATTATCCCGAG 92410 28 100.0 32 ............................ ATGTGTCTAAATCGGGGTAGATTTCCGCGAGC 92350 28 100.0 32 ............................ AAAATCTCTGGAATTTGTCGCATATTGCCTTT 92290 28 100.0 32 ............................ GTTGCAAGGTTGTAAGCTGTCCCCGCGTATTC 92230 28 100.0 32 ............................ ATGAACACATGATCACTTCTTGATGGATCAAA 92170 28 100.0 32 ............................ ATCAACGGGAGCGTAAGCGAAATGAAGAAACG 92110 28 100.0 32 ............................ AAGTGTCCGCGCTCACGTTAATCCCCGTAAGC 92050 28 100.0 32 ............................ AAGCCACAGCGCAGATGAGCACGTCATCACGT 91990 28 100.0 32 ............................ GATCCAAGCGTTACAAGTGAATCGTGGCTCTT 91930 28 100.0 32 ............................ AAGCACTATGCCGATAGCTCCCCAAAAGTCAT 91870 28 100.0 32 ............................ TAGCAATGGCAACAGCCTTTTTTATTATAGTT 91810 28 100.0 32 ............................ TCGCCTTTTGTCGCAAACCATTTGCGCACCCG 91750 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 91690 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 91630 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 91570 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 91510 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 91450 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 91390 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================ ================== 20 28 98.4 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 171644-170535 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPVO01000005.1 Pasteurella multocida strain HNA09 Contig005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 171643 28 100.0 32 ............................ TTGCACAAGTCATTGCAGTTGTAGCAAAACGT 171583 28 100.0 32 ............................ ATTAGCTGAAGACCGATTTATTAGAAATACAG 171523 28 100.0 33 ............................ GTCGTTGAAACGGCACCATGGGCGTTTGCATTT 171462 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 171402 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 171342 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 171282 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 171222 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 171162 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 171102 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 171042 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 170982 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 170922 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 170862 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 170802 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 170742 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 170682 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 170622 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 170562 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 19 28 99.6 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATACTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //