Array 1 888805-891412 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028147.1 Mycoplasma gallisepticum strain f99 Avipro vaccine chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 888805 36 100.0 30 .................................... ATTTACGAGCTAATTGGACTTAAGTAAATA 888871 36 100.0 30 .................................... ATTTTAGCGAACCTAACTGATATTGTTACT 888937 36 100.0 30 .................................... ATCAACAACTGTATCAACGCTTTCTAACCG 889003 36 100.0 30 .................................... AAAGTGAAACTTGAGTAAGTCAAGTTACCG 889069 36 100.0 30 .................................... TTATTGAACAACTTAAAACACTTGACAAAC 889135 36 100.0 30 .................................... TATCCCCGAAAACATAAAAAACATTCAATG 889201 36 100.0 30 .................................... AACATCTAGACTTGACAAATAACGTTCGAC 889267 36 100.0 30 .................................... AACCGAACGAACTTTTTCAAACTTAAGAAT 889333 36 100.0 30 .................................... TTGCCCATATTTGGTTTATGGTAGTGTACT 889399 36 100.0 30 .................................... AAATTTTAGTGATGGATCGTCAGTTGTTCA 889465 36 100.0 30 .................................... ATTTTAAAGATAAAACTGCGCTTGAAGTGG 889531 36 100.0 30 .................................... CAAATTTAAAACACGTTTATATTTTTGACA 889597 36 100.0 30 .................................... GCAGGTATATATATAACAAGTCAAGCGCGT 889663 36 100.0 30 .................................... GAAAACGTCATCTTAACGACTTCGTTGTTG 889729 36 100.0 30 .................................... ACTCGATCATTTTTTCAGCTCAAAATTTAG 889795 36 100.0 30 .................................... TGAATCCATAGGAATTATTTCATCAAAAAT 889861 36 100.0 30 .................................... TTTTATTCCAGAAACTCTTAAAAAAGTTGA 889927 36 100.0 30 .................................... CCTTGAGCACTTGAACGATGATTAAAATAC 889993 36 100.0 30 .................................... AAATGCAACTTGTTTTCAGCTGCAAATTTA 890059 36 100.0 30 .................................... GTAATGTTTGGAATTGTTAACTTGTCACTT 890125 36 100.0 30 .................................... GTTTAATGGTTATGACCAGATTTTGATACC 890191 36 100.0 30 .................................... CACTTTAACAACACAACAAACTGAGTTAGT 890257 36 100.0 30 .................................... AAAGTGAAACTTGAGTGAGCCAAGTTACTG 890323 36 100.0 31 .................................... GACCGAAAAAAATATTACCCACGTTTGGTTT 890390 36 100.0 30 .................................... ATTAACGACACTAACGCAGTTGTAAAAATT 890456 36 100.0 30 .................................... AAATTACGATTTTTTATTCCCGAAACTTTT 890522 36 100.0 30 .................................... TGATTTGTGTAAGTAATACTTGTCGCGCTT 890588 36 100.0 30 .................................... CAGCGCTTGAAGTCGTTGAAAAGATCAATA 890654 36 100.0 30 .................................... TTAATGAACAAGACTATTTAGGTCTTTTAA 890720 36 100.0 30 .................................... AAATACTCGCAACTTTTTTAATGTTATAAG 890786 36 100.0 30 .................................... AAGATCACTAACCATCAAGTTCGTGTTAAT 890852 36 100.0 30 .................................... AAAAACGAAGAAAACTTAAATAAATTTATT 890918 36 100.0 30 .................................... CACACACCAAAGATAAGTCGTGACTAGCTC 890984 36 100.0 30 .................................... TAGTTGATAGTTATTTAGACTATTTTGCTG 891050 36 100.0 28 .................................... TGATCAGAGTTATGCAGAATCATTATCT 891114 36 100.0 29 .................................... ATCGGAATGTTTTTATTGTTGATCCTGAA 891179 36 100.0 30 .................................... TTTTTAAAGTTAATTTTAAAAAAATCTTAA 891245 36 100.0 30 .................................... AGACCTATAACCACAACTTACTATTTAGTT 891311 36 100.0 30 .................................... TTATTAATAAACCTCTCTAAATTTTGTGGT 891377 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 40 36 100.0 30 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Left flank : TTGATAAAGAAGTTGTTGCTAAACTTAATGAAACGTTAGGTCGTGATATTATCTCGTTAGATACTTCTTACTCTAAGATTCTGAAATCAATAATAAAGATTTCAGAAGACTATATAGATCATGAATTTATCTATTCATATTTAGAATTATTACATTGATCAAAAGAAGTTAAAACAGTTATTCTTAAAGACTTTGATAATATCGATCTAAAAAGGTTAAGTAACTTAACTCAAACTACTAATTTAATTATTATGAAGAATGATATTATCTATGATCTTGAAAAAAATTTTGAGTTTTTTGAGACATACTGCTTGATTGATCATGATTATGAAAATATGATTAAGATTGATAATATGCCTTCTTTTGAATATTTATTAGAAGATATTTTCAAAGTTATGGTTGATGAAGAGTTTAAGGCCAATATGTCTTTTCATCAGCTAGAAATAATTAAAAAAGAATTAAAAAAGCAGATTAATTAGCTTATTTTATTTGACAATGAG # Right flank : CAAAAACAAGTATTTATCTATAAACAAAAAGTTTTATCATTAAACATATTTAATCTAAAACAAAATTTTAAATAACTAAACTATTACTTAATTTTTTGTTTCATATTAAACAACATAATTCCAGTTGCTACTGAGACGTTTAAGGACTGTATCTTATCAGTATACATCGGGATCTTGATCTGATAATCAGCATTCTTAATTAGTTGACTCGAAACTCCCTTTTGTTCGTTCCCAACAATTAGGATTGATTTATTAGCATAATCAACATTATAATCTTGAGCTTGATCACTTAAATTAGACACATAAGATCAAAAGCCATACTTATCTTGTAGATCTTTGATCGCATAAGATAAGTTGGCAACCTCAATTAGATTAAGATAAAAACATGCACCTAGTGATGTTTTTATCACCGTGTTGTTAATGCTTGCTTGATTGTCTTTTTTAAAGATGACCCCAAGCACATTTGCTGCCAAACAACTCCGTAAGATCCCACCAAAATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [81.7-85.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //