Array 1 172-24 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJJR010000216.1 Photorhabdus laumondii strain HB1.3 Plum_HB1.3_216, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 171 28 100.0 32 ............................ ACAGCCGGAAAATTAATGGCAAAGCATTAAGT 111 28 100.0 32 ............................ CGTAATTTCCTGCTTATCATTACTCTTTAAAG 51 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGACGAGGTATTGATAGTGGCCGTAGAATTTTAACGCATCAGGGGGATGCTATCCGAAATATTCAGGGTTCGTTCGCCGGCATGATAGCACTAAATTATCATTTGGCAACAAGAGGGGCTTTTTATGCTAGTCAAGTTCTTGGAATAGCGACAGATGGCAGTTTCAAATCGATAAATATTTCTGACACAGATACTCCATACGGCTTTGGGTTCGAGGCGTCAAGGGTTGTTCCTGTAGCCTCAGAGAACCGCCCTCGCAACATAGCATTTAATTACATAGTGAGAGCGGCGTAATGGCTGAACAAAAATACGCTTGATAGCTAGAAATAGAAGAAGAGACTGCTTTCTACTTGGATGGAAAAAATTTTGACCCTTTTTTAACGGCAAATTTTAATTTATTGATTTTTAAGTAAATATTGTTTATCCCACAAAAAAGGGTTTTTTATTTTTTATCATGGTTGCTCTTTAACATTCAATAGGTTGGGGTTAATATGTAACAA # Right flank : ATACGTTTGCACTCTTCTATATAG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3373-3104 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJJR010000216.1 Photorhabdus laumondii strain HB1.3 Plum_HB1.3_216, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3372 28 100.0 32 ............................ ATACAACTAACATAGCGAGATAATCATGACAG 3312 28 100.0 33 ............................ ACGCATCAACTGGCCGAAAAAGTCAGTTCCCAG 3251 28 100.0 32 ............................ ATAGTGTAGATGGGCCATGCCTGCGTCCATGT 3191 28 100.0 32 ............................ ACCTTTTAGTTATGAGGGTGTGCGTTTTTATT 3131 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 5 28 99.3 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TATTGATAGCGGCCGTGGAATTTTAACTCATCAAGGGGATGCCATTAGAAATATTGTAGGTTCATTTCCTGGGGCAATAGCACTTCATTTTGAGCTGGCAGCAAAAGGGGTTTTTTACGGTAACGCAACTTTTGGCGTGGCTACAGATGGTAATCCTAAATCAGTAGATCATTTTACCCGGGATGCTGTATACACTACATACGGTTTTGGGTTCGACACGTCAAGGGTTGTTCCTGTAGCTTCGGAGAACCGTCCTCGCAACATCGCCTTTAATTACATAGTAAGAGCGGCGTAATGGCTGAACAAAAATACGCTTGATAGCCGGAAATAGAAAGAGAGACGGCTTTCTACTTGGATGGAAAAAATTTTGACCCTTTTTTAACGGTAAATTTTAATCTGTTGATTTTTCGGTAAATATTGTTTATCCCACAAAAAAGGGTTTTTTATTTTTTATAATGGTTGCTCTTTAACATTCAATAGGTTGGGGTTAATATGTAACA # Right flank : ACCAACATTTTCACTTACCAATCTATTTTCAGAACTGTCGGCTCAAGTGTATCGTTGAGAACAATGAATGTGTGTTTTATGAAGATAGAGAGCCTATGACATTCCAGAACACCGTCGCTTAGATATTCGTGTCCAAATGCCAGAAGATTCATCTTGGAATTTAAAATAGCAGGCGTTACAGGAAGAGATAGAAGGAATAAGAGCAGAATAGTTTTCAGATGTTAAATATAAATGGTTTGGGTATGTTTTCGATTCTAAAATATTTAATTACTTATTACTGCTAATTATATAAAAATAGTCAATCTCCTAATAAATAGGAATGCTGTATTACTCTTCTTTCTGAACTAGACTTTGATTTTAATGAATTACAGTCGGATTATTTTTACAGTAATTAAATATGTTGATTATAAAAAATATTATTTTGCTTAAGGAGTAAGGATATGAGTCAAAAAAATGATTTTAAAGCTTTTTCTATTAGCGATAATGCTAATGTAATTAGC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 25029-24821 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJJR010000066.1 Photorhabdus laumondii strain HB1.3 Plum_HB1.3_66, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 25028 28 100.0 32 ............................ TAGAAATCCTTGAATATAGTCAGACCCGTAAT 24968 28 96.4 32 .C.......................... AACTTCTCCCGCACACAAAGGGAGAGTGGGCG 24908 28 100.0 32 ............................ TAGAAATCCTTGAATATAGTCAGACCCGTAAT 24848 28 92.9 0 .C..................A....... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 97.3 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACTTCTCCCGCACACAAAGGGAGAGTGGGC # Right flank : AGAGGATTAATTGAGCGCTTTTAGTGAATATTTATTCATTGCACCACAGCGATGTTAGGAAAGCATGTTAGGAAGGGGAGGGGCCGGCATAAAAAAAGCCACCTTGCGGTGGCCTTTTCTTTTTTCTAACTCACTGTTTTATCAGCGAATTTCATTTGGTGCCCAGGGCGGGACTTGAACCCGCACAGCCTTACAGCCGAGGGATTTTAAAAACCATCACAGCATTTTAAGAAACAATAAGTTAAGTTAAATCAGTTGGTTATATTTTATATATGTGCATTGATGTAGAGCTATATATGATGTTGTCGCCACTTGAAATTAGTCATCTTCAATCTGATCGTAAGGGTTGAGAGTTAGCGCCAAATCAAGATGCTCTGGAGCAAAGTGCGCATAGCGCATTGTCATATTTATAGTGCTGTGACCTAATATTTGTTGTAGTACTAAAATATTGCCGCCGCGGGTCATAAAATGTGATGCAAATGTATGACGGAGCACATGGG # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.60,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 331-478 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJJR010000052.1 Photorhabdus laumondii strain HB1.3 Plum_HB1.3_52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 331 28 100.0 32 ............................ AACAACAAAACCAACATGTCCTCCACCAATAT 391 28 100.0 32 ............................ AAGCATCCCGATCACTTCGGTAATATGAATGA 451 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 3 28 98.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTTGGAATATTGGATGATGTCACTATTGAAAGGGGCTGTGAGATTAAGAGGTACTGATTTTTGTCGATGACCGAATTCAGTGAATGGTTCCAGTATCATTGAACATTTTACAGGCAACAATTCTCACTTACTGCATAGATCTTAGGCTTAGAACAGATGACTTAAGTATGTGATGGTATTTTTGCTGCTACCTTATTTTTACCCTTTTTTTGAAGGGAGTTGTAATTTATTGATTTTATGGATAAATTAATTATCTCTTATAAAAAGGGTTTTTCACTTTTTAGTAGTTATGCTATTTAAAAATCAGCAGGTTAAAGTTAATATGTAACAG # Right flank : GCGGCAATGGCTGGAGAAGATGAACAGGAGTTTCGCCAACGCTGTATTAGTGGATTTCAAAAAGCTGATGCTTTAGACACCATGATTGAGGCACTACAAACAACTGCGCAACAATTGAGTCAGGTGGCACGATGAATATTCTCTTAGTTTCCCAGTGTAATAAACGAGCGCTAACAGAAACCCGCCGAATTTTGGATCAATTTGCTGAACGTAAAGGTGATAGAACTTGGCAAACGGCTATCACCCAGGAAGGTTTAAATACTTTGCGTAAGTTATTGCGTAAAACGGCACGTCGTAATACGGCGGTGGCTTGCCATTGGATAAAAAGTGGTGGTCAAACTGAGCTGTTATGGATAGTCGGGAATTTGCGGCGCTTTAACTCACGAGGAGTTGTACCTACAAATACAACACAACGTGATGTGCTGAAAAGTCAGGATGAAAATCATTGGCATAGTGTAGAGGCTATCAGCTTATTGGCAGCGATTGCCGGGTTATTTCAT # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 8975-10623 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJJR010000052.1 Photorhabdus laumondii strain HB1.3 Plum_HB1.3_52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 8975 28 100.0 32 ............................ GTCTGTTACTTATGAACAATCAAAATATCTTT 9035 28 100.0 32 ............................ GATGATAAGCTATATCTTGTAGCGTTTAATGC 9095 28 100.0 32 ............................ TGCTTGGGATACGACGTCTTTTAAAGTCGATT 9155 28 100.0 32 ............................ TTTACCGTTCAGATAAGTGACGGCTGGATTGA 9215 28 100.0 32 ............................ AGCATTAAAGCCATCATATTCCAGTTCGAAAC 9275 28 100.0 32 ............................ TGTTGCTATCCATGATAACATTAAGATTAACA 9335 28 100.0 32 ............................ TGAATCCGAATTAACAGATTCCGACGCTATTG 9395 28 100.0 32 ............................ ACCTACATCCATCGGTATCCGGAGGGGTAATC 9455 28 100.0 32 ............................ CATGCCGAGTTGTGGATTGATGATAGTCAAAT 9515 28 100.0 33 ............................ AGTTTGAAACCATCACTACGAGAATTATTAAGT 9576 28 100.0 32 ............................ AGCGGCTACAATGTCTATGCTATTCAGTGGGT 9636 28 100.0 32 ............................ TGGGCTGAATTTATTAAACCTGACGCGCCGGA 9696 28 100.0 32 ............................ GATAAGTGACCGAAAACAGGCTTTACATCAGT 9756 28 100.0 32 ............................ TTGTTGCATCGTATGGTGATGAACAAGTTTTA 9816 28 100.0 32 ............................ GGTGAAGAAGATAACAAGTCGTATTACGAAAC 9876 28 100.0 32 ............................ AGCATGTAAGCGAAAAGGAAAATACCGATGTG 9936 28 100.0 32 ............................ TTCTCACCTTTTCGCCGCACATAGCGGCCACC 9996 28 100.0 32 ............................ TTTTCGCTTACATGCTGGACACTCTCCTGCAT 10056 28 100.0 32 ............................ TTATGGACAGGCATTATTAGCTTTATTGCAAA 10116 28 100.0 32 ............................ TGATAGAGCTTATTCGACAGCTATAGCAAATA 10176 28 100.0 32 ............................ TGACCTCTACGAAAACCTTTCAAGGCATTTCT 10236 28 100.0 32 ............................ TAACGGAGGACTATTACCCCACAGGGGCATAG 10296 28 100.0 32 ............................ TACGGCGAACGTATACAGATTGTGCGGCCACC 10356 28 100.0 32 ............................ ATGATTAATCCATCGACTGCGGGTAAATCAAA 10416 28 100.0 32 ............................ ACTACATGCTTCTTACTGACGTATATAGGTGC 10476 28 100.0 32 ............................ AAAATGCTGGGCTGCTTCTGACAGGGATAGAC 10536 28 100.0 32 ............................ ACTCCACATCCGGCGCTTGATTCACATCTACA 10596 28 78.6 0 ...........T.........AGC.C.C | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCATTGAATGATTTGCAGTCTTTATCTTGGTTAAAAGGACTCCGGGATTATGCTGAGGTGATTGATATCAAGCTGGTACCTAAGGATGCTCGATATCGTCGTGTTAGCCGAGTGCAGGTAAAAAGCAATGTTGATAGGATTCGCCGTCGTTCGATTAAAAAAGGATGGTTAACGGAGGAACAAGCCTTGCAACGCATTCCTATCAGCAAGGAACAACGCACTCATTTACCGTTTCTGTACCTTAAGAGCTTGTCATCAGGACAAAGTTTTCTGTTGTTTGTCAAACAAGGGCCAATACAAGACAAACCGACGTCAGGAGTTTTTAACTCGTATGGATTAAGTTCATCAGCTACCATCCCTTGGTTTTGACCCTTTTTTAGCGGCTAATTATAACTTATTGATTTATTTAAGGGATTAGCCGCTGCTAATAAAAAGGGTTTTTCTGCTTTTTATCATTATGTTCTTTAATAATCAGTAAATTAAAGGTAGTATCTAACA # Right flank : CTTGATTGAGTGCGCTAAAAAAGCAACCTTTTTTCTTCTCGATATGCATCAATTGTTGTGCTTTTGTGCATATTCTTCACTATTAACCCATTGGTGGTCTTTTTCCCAGGTAAATAGCCATTTACGAGTTGGTCCGGCCATTACGTTGAGATAATAGTTGTCGTAACCGGCAATGGTTGCCACTGGGTGGTAGCCTTTGGGCACCATTACCACATCTTTATTGTGAACAGCCATTGATTCATCCAGTGAACGGTCATCGGTATAGACACGTTGCATGCAGAACCCTTGAGAAGGGTTCAGGCGATGGTAATAGGTTTCTTCCAAATAGGTTTCCTGTGGTGCATTGTCGGTATCGTGTTTATGGCTAGGGTAGGAGCTGGTGCAGCCTTCATCGGTAAAGACTTCAACCACCAACAAGCTATCAGCAGGTTTATTATCCGGTAGGATGTTGTGAACATAGCGTCGGTTGTAACCATTGCCACGTTGTTCTGCATCAATAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1822-372 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJJR010000142.1 Photorhabdus laumondii strain HB1.3 Plum_HB1.3_142, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1821 28 100.0 32 ............................ TACTGTTTCGATATGTAATCCAGCGTAGTCAG 1761 28 100.0 32 ............................ GGATGGTTCAACGGGGCGTTATGCCTGGGTTT 1701 28 100.0 32 ............................ AAAACCGGCGCTGCGGCCATATTTGTTGTCAT 1641 28 100.0 32 ............................ AAGAATTGGAGTTTGCACTCTGCCAACTGAAA 1581 28 100.0 32 ............................ TGATCCGGATACGCCGGAACTGGAACCACTAC 1521 28 100.0 32 ............................ TCTAATCGTTCTCAAAATACATATCCATAGTG 1461 28 100.0 32 ............................ TGCATCTGGCCAAATGGATTGCCCGCAAACAC 1401 28 100.0 32 ............................ AAAAGGTGACTGGATAAGTTTTGAGCCTACCG 1341 28 100.0 32 ............................ TCCGGCATAGTTACCTATTACAGTAAAAATCA 1281 28 100.0 32 ............................ CTTGCCTTTCGCGCTCTTGGATCTCCAAGCAA 1221 28 100.0 32 ............................ CTCTGGATGTGACCTTTATCAACGAAGAAGAT 1161 28 100.0 32 ............................ GAAGAGATACGTTATGTAGCATCGGAATTAGA 1101 28 100.0 32 ............................ TTAACCCAGCGTCTCTTCCAAGTCACTTGCTG 1041 28 100.0 32 ............................ ACAATAGTAAAAGGAGAATAATATGAGTGATA 981 28 100.0 32 ............................ CTAGCATCACGTAAGGATAAAGAATCAGGAGA 921 28 100.0 14 ............................ CATACCAGAACTAG Deletion [880] 879 28 100.0 32 ............................ ATGTGGGTAGTATATCCGCGGAAGCGTTATTT 819 28 100.0 32 ............................ TCACGTCGGTATCTCACTGGGGACCTCCCGTC 759 28 100.0 32 ............................ TTTCAGGATTTTACCCATCAGGCGGGGATTCA 699 28 100.0 32 ............................ CTCAAGAAGTTTACCGGTTTCTTACCGTCTGC 639 28 100.0 32 ............................ ATAACAAAATGCCGCATTCGATGCCATTTAGC 579 28 100.0 32 ............................ TTTCATTTCATTGCTGATAGTGCCGCCCTTGG 519 28 100.0 32 ............................ AGACAGATTAGAAGTGTATGTGACAGAAGGAA 459 28 100.0 32 ............................ TGAGTAAGCTTCAATGAGTTGACTTATTTGAC 399 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 25 28 100.0 31 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGTTATTTGGGATATTCGCTTGGTGAAAAGTGGCAGGGAAAAGGGATGATGTACGAAGCTTTACAACCAGCTATCCGTTATATGCAACGCCAACAGGGGATGCATCGGATTATGGCTAATTATATGCCAGATAATCATCGTAGTGGGAAGTTGTTGGAACGATTGGGTTTTGAACGTGAAGGCTATGCTAAGAAATACCTGATGATTAATGGAGTTTGGCAAGATCACGTATTAACCGCGTTGACAGATGAAAAATGGAGTGGAAAAAGTTGATTATTACGCTGTACTGTCACCAAATAAAGTAAAGCAAATTGGTAATGATGAATTAAATCACTGTTGAAAGTCAGCCTTCTCCACCCCTTATTTTTGACCCTTTTTTGAGGGTGGATTTTAATCTATTGATTTTTAATGGAATATTATTTCTCTTGTAAAAAAGGGTTTTTTCATTGTTTTATCAATATATGCTTTAATTGTCAGTAGGTTGAAGTTAATATGTAACA # Right flank : ATGAGTAAGCTTCAATGAATTGATTTATTTGACGCACTGACTTCGGTTGGTGCGTTTTTCGAAGTGGCTATTTGGGCTTTCTGTAGTAAGGCTAGTTGCAAGGTACCATCATTTAGGCCAAATACAATGTTACATTGGCAAATTATAAAAGTTAATGATTTCTAGTGTATGAGAATGAATTTATGCATACTCGCCGATTTTGTTAACAAAGTGAATGATTAACCATGGTAGATTCATATAATAAGTGCAATATCGTTCCTCTTAAAATCAACATGTCCGTATTACTTTAAATTATTAAATGGACATTTTGTTATTGATTATCCTGAAAATAATTTGAATGGTTTCTTTAATTCGTATAAATAGGTATTATTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3400-2052 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJJR010000018.1 Photorhabdus laumondii strain HB1.3 Plum_HB1.3_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3399 28 100.0 32 ............................ ACAAGTAACTATTTTCGTTACCGTAACCTTCT 3339 28 100.0 32 ............................ ATCAAGTAGTGCTTACAAAGGAGAAGAATGTA 3279 28 100.0 32 ............................ CGCATACCAAGCATCGAATCCCCGTTTAGATA 3219 28 100.0 32 ............................ TAAACGATAACCCCATGCTTCTAATGATTGAG 3159 28 100.0 32 ............................ TTTCCGCTGTACGTTGTACTGCACTATTTAAT 3099 28 100.0 32 ............................ ATCAAAGCACAGCAACGAACAGGCAAGGAAAG 3039 28 92.9 32 CC.......................... TGATACGTCCACAGGTAGCTATTTTCGTTACC 2979 28 100.0 32 ............................ AAGGGAGTGGACCAAAGGGTAAACCTCAGTTA 2919 28 100.0 32 ............................ AATCAAACTCCAGTCAGTATCGCTATCCGTAC 2859 28 100.0 32 ............................ GTAAACAAACGAAGTATCGGTCTGCCGCTCTT 2799 28 100.0 32 ............................ AGACGTGCTCCTTGGGTCCTCTCATTAAGTGT 2739 28 100.0 32 ............................ TGCATCCATCAACATTAAGCCCGTTGACGATT 2679 28 100.0 32 ............................ TTACATAGGCGGCGAGTTCTGCACTGATAGAA 2619 28 100.0 32 ............................ GAGATGAATGACATTGCGCTTCAATGGCAAAC 2559 28 100.0 32 ............................ TAACACATCAGCAAGCTGTTGCTGTGGCAAGT 2499 28 100.0 32 ............................ ACACGTCAGTTCGATAATAAAATCCAGGTCAT 2439 28 100.0 32 ............................ AAAATGAGAGTAAGACGATTAGATAGCGATCA 2379 28 100.0 32 ............................ AATGAAATTAATCGTTTCTCTTACAATATTTC 2319 28 100.0 32 ............................ TACTATGTTGGGATATGCTGCATTATCTAGAA 2259 28 100.0 32 ............................ TCTTGGCCCACATGCGCCACAACGTGGGATGG 2199 28 100.0 32 ............................ AGTATGCACCTTGCGGAAAGCGACAAAGTGGT 2139 28 100.0 32 ............................ AAATCCCCGGTCGCTATCAGTAATTGCATCAG 2079 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 23 28 99.5 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAGGAAGCAGGTCTGGATGTTGTGATGGATCGCTGCCCAAAAATTGAAATTCCAAGATTGGGACTCGAAAAATAATATTTTTCAGCTTGTAGTTATTTGGTTTCTAATTAGTGGATGAAGGGACCCTGGCACCAATATCTAATGTAAACTTAAGGCGTTGGATGAGAAGCGGTGTCCGGGTTCCAAGTGTTCAAAATAATGTTTGAGTTGGATATTGAGTTTACTTTTCTAGACATCTTATAAAATCTATTTTTACAGTTATTACAATATCTTAAGGAAAATTTAGTTGCTCTTATTGCTGCTAAATTTTGCCAGAATCTACACTTTTATTGCTATAAGATATGGTGCTTTTGTTGTGCCCTAGTTTTGACCCTTTTTTATCATCAAAAAACAACCTATTAATTTAAAAGAAAAATAAAACATCTCCTGAAAAAAGGGTTTTTTAATTTTTTATCACTATATTCTTTAACAGTCAGCAACTTAAGGTTAATATGTAACA # Right flank : CGCGATAACTGCCTTAGGTTGTTAGGTATAATATTGGAGGTTAATTGCGCAGTCTTGGGGCCAGTAGTTGATGGCGGATGGATTCTGCTAGCTCATCGAGAGAAGGTTGCTCTGGATGTTCATCGGATGTTTCATAGGCTAATTGTGCTTCGGCCAGATAAGTATGTACAGGTTGACCATTGTCATCTTCCATCACAACGTGATACCAGGGGGCGGAACGCAGGGTAGCATTGGATGCAATGTCATCCTCTTGGGGTTGTTCCAGCGAGTATTCCACATCAATATCCACGATGACTCCCAAATAACCCAGAAGTTTGTGACGTACTTGTTGGCCGATACCGAATTTGCTGGCGATAATCATAGTCACCTCCAAAGAAGTCTTGTATTGACATTGATATAAGGGCAGTAAGGTGAATTACAAGAGCTGTACCCGGTAGTTGAAGCCATTTTTTGTTTTAAATTGCAAATGTGGCTTCATCTATTTTCAGGTTAGCTGTAGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //